View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15733_high_8 (Length: 306)

Name: NF15733_high_8
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15733_high_8
NF15733_high_8
[»] chr5 (30 HSPs)
chr5 (19-291)||(3566314-3566586)
chr5 (138-222)||(3565803-3565887)
chr5 (89-183)||(34736593-34736686)
chr5 (93-167)||(465880-465954)
chr5 (89-170)||(7674571-7674652)
chr5 (99-205)||(19460462-19460568)
chr5 (89-171)||(39105386-39105468)
chr5 (83-171)||(1465079-1465167)
chr5 (91-183)||(41819522-41819614)
chr5 (88-170)||(9202813-9202895)
chr5 (88-170)||(12425494-12425576)
chr5 (89-171)||(42569046-42569128)
chr5 (101-168)||(4014502-4014569)
chr5 (103-194)||(5963362-5963453)
chr5 (92-123)||(29935418-29935449)
chr5 (86-149)||(35135725-35135788)
chr5 (89-148)||(35446000-35446059)
chr5 (89-171)||(706385-706467)
chr5 (83-149)||(8158361-8158426)
chr5 (88-149)||(14932234-14932294)
chr5 (91-140)||(32969185-32969234)
chr5 (96-149)||(37112331-37112384)
chr5 (88-149)||(40452235-40452296)
chr5 (89-150)||(41981774-41981835)
chr5 (103-183)||(6738487-6738566)
chr5 (95-171)||(8334500-8334576)
chr5 (103-147)||(10363696-10363740)
chr5 (97-149)||(10639897-10639949)
chr5 (103-222)||(11835147-11835267)
chr5 (100-148)||(42500302-42500350)
[»] chr6 (22 HSPs)
chr6 (88-172)||(9093621-9093705)
chr6 (88-171)||(32206085-32206168)
chr6 (88-149)||(2735013-2735074)
chr6 (83-183)||(4163085-4163185)
chr6 (83-183)||(4224706-4224806)
chr6 (86-129)||(29296356-29296399)
chr6 (89-147)||(1402942-1403000)
chr6 (90-206)||(430443-430560)
chr6 (88-165)||(24476530-24476607)
chr6 (91-171)||(264293-264373)
chr6 (89-145)||(769087-769143)
chr6 (89-149)||(29274295-29274355)
chr6 (91-142)||(507171-507222)
chr6 (86-148)||(6909935-6909998)
chr6 (83-149)||(2514646-2514712)
chr6 (86-148)||(4006659-4006721)
chr6 (88-121)||(9604821-9604854)
chr6 (92-129)||(28621179-28621216)
chr6 (108-173)||(33736758-33736823)
chr6 (91-123)||(658518-658550)
chr6 (93-149)||(20671935-20671991)
chr6 (83-155)||(22742304-22742376)
[»] chr2 (37 HSPs)
chr2 (86-166)||(42907286-42907366)
chr2 (86-171)||(42420357-42420442)
chr2 (96-171)||(4026739-4026814)
chr2 (86-183)||(2142563-2142660)
chr2 (83-148)||(41407246-41407312)
chr2 (93-183)||(42457858-42457948)
chr2 (77-146)||(31740013-31740082)
chr2 (86-149)||(25609740-25609803)
chr2 (106-205)||(26143724-26143822)
chr2 (93-172)||(32364794-32364873)
chr2 (86-169)||(36114586-36114669)
chr2 (108-171)||(39567825-39567888)
chr2 (86-149)||(43199358-43199421)
chr2 (83-148)||(12464533-12464598)
chr2 (156-205)||(27695730-27695779)
chr2 (92-149)||(35459854-35459911)
chr2 (87-148)||(41241196-41241257)
chr2 (86-123)||(43199856-43199893)
chr2 (84-204)||(43570305-43570423)
chr2 (81-171)||(29628801-29628890)
chr2 (133-205)||(40682483-40682555)
chr2 (142-205)||(32592465-32592528)
chr2 (86-149)||(35755565-35755628)
chr2 (96-183)||(41170438-41170520)
chr2 (97-167)||(3611152-3611222)
chr2 (86-148)||(15305602-15305664)
chr2 (92-170)||(36114342-36114420)
chr2 (88-162)||(41875718-41875792)
chr2 (88-149)||(5133716-5133777)
chr2 (92-129)||(12313242-12313279)
chr2 (92-149)||(17952770-17952827)
chr2 (157-214)||(44255428-44255485)
chr2 (109-183)||(44600449-44600525)
chr2 (98-170)||(23747227-23747299)
chr2 (105-149)||(31461382-31461426)
chr2 (89-149)||(44439426-44439486)
chr2 (95-167)||(44786477-44786549)
[»] chr1 (37 HSPs)
chr1 (86-149)||(38578471-38578534)
chr1 (88-182)||(9656557-9656655)
chr1 (90-183)||(37841908-37842001)
chr1 (88-170)||(51190784-51190866)
chr1 (88-145)||(9572173-9572230)
chr1 (89-149)||(4256108-4256168)
chr1 (90-149)||(34619445-34619504)
chr1 (83-165)||(836399-836481)
chr1 (81-143)||(10809295-10809357)
chr1 (84-129)||(15477542-15477587)
chr1 (83-148)||(37517254-37517319)
chr1 (92-205)||(45975578-45975691)
chr1 (93-149)||(7028236-7028292)
chr1 (88-148)||(24915116-24915176)
chr1 (142-205)||(1510438-1510501)
chr1 (134-205)||(5894274-5894345)
chr1 (102-149)||(33339499-33339546)
chr1 (88-205)||(34290127-34290241)
chr1 (88-139)||(39658545-39658596)
chr1 (86-141)||(48064261-48064316)
chr1 (90-148)||(13809943-13810001)
chr1 (92-146)||(15687142-15687196)
chr1 (89-150)||(38170758-38170820)
chr1 (89-162)||(1432446-1432519)
chr1 (89-162)||(4700132-4700205)
chr1 (88-149)||(7472256-7472316)
chr1 (84-149)||(27145796-27145861)
chr1 (86-205)||(1829020-1829136)
chr1 (89-176)||(3495701-3495788)
chr1 (94-162)||(4445639-4445707)
chr1 (81-125)||(10808602-10808646)
chr1 (141-205)||(14331667-14331731)
chr1 (86-146)||(29793729-29793789)
chr1 (89-149)||(36151571-36151631)
chr1 (88-148)||(47432041-47432101)
chr1 (93-129)||(47498906-47498942)
chr1 (89-149)||(48830142-48830202)
[»] chr7 (23 HSPs)
chr7 (86-202)||(20881699-20881815)
chr7 (91-171)||(42656437-42656517)
chr7 (83-149)||(49060484-49060550)
chr7 (133-183)||(21619317-21619367)
chr7 (89-205)||(47795845-47795959)
chr7 (88-144)||(40689051-40689107)
chr7 (86-149)||(28613597-28613660)
chr7 (88-142)||(34083590-34083644)
chr7 (86-172)||(40009391-40009477)
chr7 (83-148)||(30570991-30571056)
chr7 (86-162)||(36874028-36874104)
chr7 (88-183)||(33672988-33673082)
chr7 (102-149)||(43152981-43153028)
chr7 (86-149)||(45813243-45813306)
chr7 (88-183)||(47177546-47177641)
chr7 (88-142)||(30180002-30180056)
chr7 (86-123)||(13960886-13960923)
chr7 (89-130)||(22283810-22283851)
chr7 (86-123)||(33601472-33601509)
chr7 (152-205)||(38500057-38500110)
chr7 (83-123)||(8094240-8094280)
chr7 (133-205)||(33552931-33553003)
chr7 (88-203)||(33678672-33678785)
[»] chr4 (19 HSPs)
chr4 (92-171)||(3155525-3155604)
chr4 (83-170)||(26520289-26520376)
chr4 (88-169)||(56480271-56480353)
chr4 (86-147)||(17884014-17884075)
chr4 (91-170)||(2987112-2987191)
chr4 (108-171)||(6364071-6364134)
chr4 (89-139)||(28300365-28300415)
chr4 (86-143)||(4071832-4071889)
chr4 (94-171)||(44249208-44249285)
chr4 (99-171)||(23503481-23503553)
chr4 (83-171)||(51630033-51630121)
chr4 (81-148)||(22030149-22030215)
chr4 (86-145)||(25885807-25885866)
chr4 (86-149)||(49219083-49219146)
chr4 (97-163)||(7601689-7601755)
chr4 (88-149)||(21953217-21953278)
chr4 (93-142)||(47800581-47800630)
chr4 (86-142)||(47119028-47119084)
chr4 (89-149)||(47946142-47946202)
[»] chr3 (30 HSPs)
chr3 (86-148)||(30956689-30956751)
chr3 (86-148)||(30972501-30972563)
chr3 (86-162)||(44061086-44061162)
chr3 (93-153)||(42808919-42808979)
chr3 (88-171)||(32095256-32095338)
chr3 (93-183)||(34638034-34638125)
chr3 (91-149)||(1395615-1395673)
chr3 (89-171)||(25447310-25447392)
chr3 (92-183)||(28240236-28240329)
chr3 (86-148)||(35959519-35959581)
chr3 (90-170)||(30573981-30574059)
chr3 (86-171)||(31403280-31403365)
chr3 (86-205)||(8142775-8142892)
chr3 (101-149)||(36445676-36445724)
chr3 (142-205)||(2719347-2719410)
chr3 (86-149)||(29771753-29771816)
chr3 (89-148)||(37689450-37689509)
chr3 (103-149)||(2128331-2128377)
chr3 (89-171)||(35127437-35127519)
chr3 (83-149)||(36189510-36189576)
chr3 (152-202)||(39980610-39980660)
chr3 (83-128)||(14145877-14145922)
chr3 (103-148)||(15304427-15304472)
chr3 (86-123)||(20257505-20257542)
chr3 (133-170)||(20669102-20669139)
chr3 (102-171)||(34235155-34235224)
chr3 (86-123)||(35364262-35364299)
chr3 (89-149)||(38462225-38462285)
chr3 (93-149)||(42809245-42809301)
chr3 (110-170)||(46030911-46030971)
[»] scaffold0024 (2 HSPs)
scaffold0024 (93-178)||(21348-21433)
scaffold0024 (93-173)||(58857-58937)
[»] chr8 (26 HSPs)
chr8 (86-183)||(16210949-16211046)
chr8 (96-205)||(41475133-41475242)
chr8 (93-173)||(37444485-37444565)
chr8 (96-171)||(26215418-26215493)
chr8 (109-181)||(8407322-8407394)
chr8 (158-206)||(28763250-28763298)
chr8 (90-169)||(3537098-3537177)
chr8 (88-149)||(4558742-4558803)
chr8 (89-149)||(7646150-7646210)
chr8 (113-205)||(9956902-9956994)
chr8 (83-143)||(29205758-29205818)
chr8 (88-171)||(3936771-3936854)
chr8 (89-160)||(27049301-27049371)
chr8 (88-170)||(10114413-10114494)
chr8 (83-117)||(34173162-34173196)
chr8 (89-143)||(35374439-35374493)
chr8 (88-149)||(1470921-1470982)
chr8 (86-143)||(10758319-10758376)
chr8 (88-149)||(11000626-11000687)
chr8 (81-114)||(12830232-12830265)
chr8 (152-205)||(30657890-30657943)
chr8 (83-123)||(10218910-10218950)
chr8 (88-148)||(12497296-12497356)
chr8 (92-148)||(12976158-12976214)
chr8 (83-123)||(31335404-31335444)
chr8 (86-162)||(42597332-42597408)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 3566314 - 3566586
Alignment:
Q  19 tagttccggcgaaattgacaaaatgcagcactttgtacgcttagttctgtctcgtgaactctagaataacttatagcttatacaaaaataatttaacttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3566314 tagttccggcgaaattgacaaaatgcagcactttgtacgcttagttctgtctcgtgaactctagaataacttatagcttatacaaaaataatttaacttt 3566413  T
Q  119 attttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttatatccaaacatgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3566414 attttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaatcacaaataagctgtttatatccaaacatgac 3566513  T
Q  219 catatgcatacattcatacaagatcaaccaacaatgcaaacttagatatcagattattaactaagtacttggc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3566514 catatgcatacattcatacaagatcaaccaacaatgcaaacttagatatcagattattaactaagtacttggc 3566586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 3565887 - 3565803
Alignment:
Q  138 aaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttatatccaaacatgaccata 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  3565887 aaatagcttataggtaagtgcttatcatgataagtgtttgtgctgtgaatcacaaataagctgtgtatatccaaacatgaccata 3565803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 34736593 - 34736686
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||   |||||| |||||||| ||||||||||||||||    
T  34736593 ttatagcttatacaaaaataatttagctttattt-ctcttttgctatagaaatagcttatgcataagtgattatcatggtaagtgtttgtgctat 34736686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 465954 - 465880
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatga 167  Q
    |||||||||||||| |||||||||||||||| ||||| |  ||||||||||||||||  ||||||||||||||||    
T  465954 agcttatacaaaaacaatttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcatga 465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 7674652 - 7674571
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||| |||||||  |||| ||||||| |||||||| ||||| |||||||||||||||||||  |||||||||||||||||||    
T  7674652 ttatggcttataagaaaacaatttaaatttattttatcttttggtatagaaatagcttatatataagtgcttatcatgataa 7674571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 19460462 - 19460568
Alignment:
Q  99 tacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagc 198  Q
    |||||||| ||||||||||||||   | ||| | ||||||||||| |||||  ||||||||||||||||||||  |||||||||| |  | |||||||||    
T  19460462 tacaaaaacaatttaactttattcaatgttttgatatagaaatagtttatacataagtgcttatcatgataagcatttgtgctataagctgcaaataagc 19460561  T
Q  199 tgtttat 205  Q
    |||||||    
T  19460562 tgtttat 19460568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 39105468 - 39105386
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||||||||| |||| |||||||||| ||||  | ||| | |||||||||||||||||  |||| |||||||||||||||    
T  39105468 ttatagcttatacgaaaacaatttaacttcatttcatatttagctatagaaatagcttatacataagcgcttatcatgataag 39105386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 1465079 - 1465167
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||||||||||| ||||||   ||||||||||||||| || |  | |||||||||||||||||  |||| ||||||| |||||||    
T  1465079 aataacttatagcttacacaaaagcgatttaactttattttatcctatgctatagaaatagcttatacataagcgcttatcttgataag 1465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 41819614 - 41819522
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    |||||||||||||||| ||||||| |||||||| ||||    |||||||||||||||||   ||  ||| |||||||||||||||| ||||||    
T  41819614 atagcttatacaaaaacaatttaaatttattttatcttccattatagaaatagcttatacaaaaccgctcatcatgataagtgtttatgctat 41819522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 9202813 - 9202895
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    ||||| |||||||  |||| |||||||||||||||| ||||| | || ||||||||||||||  ||||  |||||||||||||    
T  9202813 cttattgcttatatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataa 9202895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 12425576 - 12425494
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||||||||||||| |||| |||||||||||||||| |||||   |||| |||||| |||||  |||| | ||||||||||||    
T  12425576 cttatagcttatacgaaaacaatttaactttattttatcttttactatataaatagtttatacataagcgtttatcatgataa 12425494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 42569046 - 42569128
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||||||||| |||| ||||  |||||||||| ||||| | |||||||||||||| |   |||| |||||||||||||||    
T  42569046 ttatagcttatacgaaaacaattagactttattttatcttttgctatagaaatagctttttcataagcgcttatcatgataag 42569128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 4014502 - 4014569
Alignment:
Q  101 caaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgat 168  Q
    |||||| ||| |||||||||||| ||||| | |||||||||||||||||  || | ||||||||||||    
T  4014502 caaaaacaatctaactttattttatcttttgctatagaaatagcttatacataggcgcttatcatgat 4014569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 5963362 - 5963453
Alignment:
Q  103 aaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaat 194  Q
    |||| |||||||||||||||| |||||   ||||||||||| || ||  |||| |||||||||||||| || || |||||| |||| |||||    
T  5963362 aaaacaatttaactttattttatctttcattatagaaatagtttgtacataagcgcttatcatgataaatgcttatgctataaattgcaaat 5963453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 29935418 - 29935449
Alignment:
Q  92 tagcttatacaaaaataatttaactttatttt 123  Q
    ||||||||||||||||||||||||||||||||    
T  29935418 tagcttatacaaaaataatttaactttatttt 29935449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 35135725 - 35135788
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||||  |||||| ||| |||||||||| ||||| | |||||||||| ||||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttata 35135788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 35446059 - 35446000
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||| |||||||||| |||||||||||||||| || || | |||| |||||||||||    
T  35446059 ttatagcgtatacaaaaacaatttaactttattttatcatttgctataaaaatagcttat 35446000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 706467 - 706385
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||| |||| |||| |||||||||||| |||||| |||||   |||||||||||||||||  |||| ||||||  |||||||    
T  706467 ttatatcttaaacaagaataatttaactatattttatcttttactatagaaatagcttatacataagcgcttatagtgataag 706385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 8158361 - 8158426
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||| ||| ||||||||  ||||||||||||||||||||| |||||  | ||||||||||||||||    
T  8158361 aataatttaaagcttatatgaaaataatttaactttattttatcttt-tgaatagaaatagcttata 8158426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 14932294 - 14932234
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||||||||  |||||||||||||||| ||||| | |||| |||||| |||||    
T  14932294 cttatagcttatacaaaac-aatttaactttattttatcttttgctataaaaatagattata 14932234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 32969185 - 32969234
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaa 140  Q
    |||||||||| ||||||||||| |||||||||| ||||| | ||||||||    
T  32969185 atagcttatataaaaataatttgactttattttatcttttgttatagaaa 32969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 37112331 - 37112384
Alignment:
Q  96 ttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||| ||||||||||| |||| ||||| | | |||||||||||||||    
T  37112331 ttatacaaaaacaatttaactttgttttatcttttgctgtagaaatagcttata 37112384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 40452296 - 40452235
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||| || ||||||||||||||||||||| |  || | |||||||||| ||||||    
T  40452296 cttatagcttaaaccaaaataatttaactttattttattatttgctatagaaatatcttata 40452235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 41981774 - 41981835
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttatag 150  Q
    |||||||||||||| ||| |  ||||||||||||| ||||| | |||||||||| |||||||    
T  41981774 ttatagcttatacataaacatattaactttattttatcttttgatatagaaataacttatag 41981835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 6738487 - 6738566
Alignment:
Q  103 aaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    |||| ||||| |||||||||| |||||   ||| |||||||||||||  ||||| ||||| ||||||||||||| ||||||    
T  6738487 aaaagaatttgactttattttgtcttttattattgaaatagcttatacataagtacttat-atgataagtgtttatgctat 6738566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 8334576 - 8334500
Alignment:
Q  95 cttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||| |||||||||||| |||||||| || ||   ||| ||||||| |||||| |||| || ||||||||||||    
T  8334576 cttatacgaaaataatttaaatttattttatcattttttattgaaatagtttatagataagcgcgtatcatgataag 8334500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 10363740 - 10363696
Alignment:
Q  103 aaaataatttaactttattttctctttgggtatagaaatagctta 147  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||    
T  10363740 aaaacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 10639949 - 10639897
Alignment:
Q  97 tatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||| ||||||| || ||||| ||||| | |||||||||||||||||    
T  10639949 tatacaaaaacaatttaatttaattttatcttttgctatagaaatagcttata 10639897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 11835267 - 11835147
Alignment:
Q  103 aaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattac-aaataagctgt 201  Q
    |||| |||||||||||||||| ||||| | |||| |||| | |||||  |||   |||||||||||||| |||| || |||||||| | ||||||  |||    
T  11835267 aaaacaatttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttatgttatgaattgcaaaataaattgt 11835168  T
Q  202 ttatatccaaacatgaccata 222  Q
    ||||||  | |||||||||||    
T  11835167 ttatatatagacatgaccata 11835147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 42500302 - 42500350
Alignment:
Q  100 acaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||| |||||||||||||||| ||||| | |||| |||||||||||    
T  42500302 acaaaaacaatttaactttattttatcttttgatataaaaatagcttat 42500350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 9093621 - 9093705
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagt 172  Q
    |||||||||||||| |||| |||||||||||||||| ||||| | ||||||||||||||||   |||| ||||||||||||||||    
T  9093621 cttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaatagcttatccataagcgcttatcatgataagt 9093705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 32206085 - 32206168
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||||||||| ||||||||||||||||||||  ||||| |  ||||| |||||||| |  ||||||||||||||||||||    
T  32206085 cttatagcttatactaaaataatttaactttatttcatcttttgtcatagagatagcttacacataagtgcttatcatgataag 32206168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 2735074 - 2735013
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||| |||||||||||||||||||||||||||| ||||| | |||||| ||||||||||    
T  2735074 cttatagattatacaaaaataatttaactttattttatcttttgttatagacatagcttata 2735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 4163185 - 4163085
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgcta 182  Q
    |||| |||||| | |||||| ||| |||||||||||||||| ||| |   |||| |||||||||||  ||||||| |||||||||||||||  |||||||    
T  4163185 aatagcttataacatatacacaaacaatttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataagtgcctgtgcta 4163086  T
Q  183 t 183  Q
    |    
T  4163085 t 4163085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 4224806 - 4224706
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgcta 182  Q
    |||| |||||| | |||||| ||| |||||||||||||||| ||| |   |||| |||||||||||  ||||||| |||||||||||||||  |||||||    
T  4224806 aatagcttataacatatacacaaacaatttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataagtgcctgtgcta 4224707  T
Q  183 t 183  Q
    |    
T  4224706 t 4224706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 29296356 - 29296399
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctcttt 129  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  29296356 aacttataccttatacaaaaataatttaactttattttatcttt 29296399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 1403000 - 1402942
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagctta 147  Q
    ||||||||||||  |||||| |||||||||||||| ||||| | |||||||||||||||    
T  1403000 ttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 430443 - 430560
Alignment:
Q  90 tatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgctt-atcatgataagtgtttgtgctatgaatt 188  Q
    ||||| || ||||||||||||||||||||||||  |||||   |||||||||||||||||  |||||  || |||||||| ||||||| || ||| |  |    
T  430443 tatagtttgtacaaaaataatttaactttatttcatctttttatatagaaatagcttatacataagtttttcatcatgatgagtgtttatgttataagct 430542  T
Q  189 acaaataagctgtttata 206  Q
     |||||||| ||||||||    
T  430543 gcaaataagttgtttata 430560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 24476607 - 24476530
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcat 165  Q
    ||||| |||||||  ||||||||||||||  ||||| ||||| | |||||||||||||||||  |||||| |||||||    
T  24476607 cttatcgcttatatgaaaataatttaactacattttatcttttgctatagaaatagcttatacataagtgtttatcat 24476530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 264373 - 264293
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||| || ||||  ||||||||||||||| ||||| | | |||||||||||||||  ||||  ||||||||||||||    
T  264373 atagcttagacgaaaacgatttaactttattttatcttttgctttagaaatagcttatatataagcacttatcatgataag 264293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 769143 - 769087
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagct 145  Q
    |||||||||||||||||| || |||||||||||||  |||| | |||||||||||||    
T  769143 ttatagcttatacaaaaaaaaattaactttattttagcttttgttatagaaatagct 769087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 29274295 - 29274355
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||  |||| ||||| |||||||||| ||||| | |||||||||||||||||    
T  29274295 ttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttata 29274355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 507222 - 507171
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaata 142  Q
    |||||||||||||||| ||| |||||||||||| ||||| | ||||||||||    
T  507222 atagcttatacaaaaacaatctaactttattttatcttttgttatagaaata 507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 6909935 - 6909998
Alignment:
Q  86 aacttatagcttatacaaaaataatttaacttta-ttttctctttgggtatagaaatagcttat 148  Q
    |||||||||| |||||||||| |||||||||||| |||| |||||   ||||||||||||||||    
T  6909935 aacttatagcatatacaaaaacaatttaactttatttttttcttttcctatagaaatagcttat 6909998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 2514712 - 2514646
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||| ||| |||| || ||| |||||||||| |||||   |||||||||||||||||    
T  2514712 aataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttata 2514646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 4006721 - 4006659
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||||||||||| ||||| ||||| |||||||||| || || | |||||||||| |||||    
T  4006721 aacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttat 4006659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 9604854 - 9604821
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttatt 121  Q
    ||||||||||||||||||||||||| ||||||||    
T  9604854 cttatagcttatacaaaaataattttactttatt 9604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 28621179 - 28621216
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctcttt 129  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  28621179 tagcttatacaaaaacaatttaactttattttatcttt 28621216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 33736823 - 33736758
Alignment:
Q  108 aatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtg 173  Q
    |||||||||||||||| | ||  | |||||||||| ||||||  |||||||| |||||||||||||    
T  33736823 aatttaactttattttatgttatgttatagaaataacttatacataagtgctgatcatgataagtg 33736758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 658518 - 658550
Alignment:
Q  91 atagcttatacaaaaataatttaactttatttt 123  Q
    |||||||| ||||||||||||||||||||||||    
T  658518 atagcttaaacaaaaataatttaactttatttt 658550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 20671935 - 20671991
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||| |||| ||||| |||||||||| ||||| | | |||||||||||||||    
T  20671935 agcttatacgaaaacaatttgactttattttatcttttgatctagaaatagcttata 20671991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 22742376 - 22742304
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaag 155  Q
    |||| |||||||||||||  |||| ||||| |||||||||| || || | |||| ||||||||||||| ||||    
T  22742376 aatagcttatagcttatatgaaaacaatttgactttattttatcctttgttatacaaatagcttatagataag 22742304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 42907366 - 42907286
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatg 166  Q
    ||||||||||||| || |||| |||||||||||||||| ||||  | ||||||||||||||||| ||||||||||||||||    
T  42907366 aacttatagcttaaacgaaaacaatttaactttattttttcttctgttatagaaatagcttatatgtaagtgcttatcatg 42907286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 42420357 - 42420442
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||| | |||||||||| |||||||| ||||||| ||||| | |||| |||||||||||| ||||| |||||||||||||||    
T  42420357 aacttatatcatatacaaaaacaatttaacgttattttatcttttgctataaaaatagcttatacgtaagcgcttatcatgataag 42420442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 4026814 - 4026739
Alignment:
Q  96 ttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||| ||||||||||||||||||||||| ||||| | |||| ||||||||||||| ||||  ||||||||||||||    
T  4026814 ttatgcaaaaataatttaactttattttatcttttgctataaaaatagcttatagataagcacttatcatgataag 4026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 2142660 - 2142563
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||||||||||||||||||| || |||||||||  || | | ||||| |||||||||||   ||| ||||||||||||||||  |||||||||    
T  2142660 aacttatagcttatacaaaaataatctagctttattttacctattgctatagtaatagcttatacacaagcgcttatcatgataagttcttgtgctat 2142563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 41407312 - 41407246
Alignment:
Q  83 aataacttatagcttatacaaaaat-aatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||||||||| ||||||||||  |||||||||||||||| ||||| |||| |||||||||||||    
T  41407312 aataacttatagcatatacaaaaaacaatttaactttattttatcttttggtacagaaatagcttat 41407246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 42457948 - 42457858
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    |||||| ||||||| |||||||||||||||| |||||   ||||||||||| |||||  ||| |||||||||||||| | | |||||||||    
T  42457948 agcttaaacaaaaacaatttaactttattttatcttttactatagaaatagattatacataaatgcttatcatgataggcgcttgtgctat 42457858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 31740013 - 31740082
Alignment:
Q  77 ctctagaataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagctt 146  Q
    |||||||| |||||||||||||||  |||||| ||| |||||||||| ||||| | ||||||||||||||    
T  31740013 ctctagaacaacttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatagctt 31740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 25609803 - 25609740
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||||| ||||||| || |||||||||| |||||   |||||||||||||||||    
T  25609803 aacttatagcttatacgaaaataaattgactttattttatcttttcttatagaaatagcttata 25609740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 26143724 - 26143822
Alignment:
Q  106 ataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||||| ||||||||||| ||||| | |||||||||||||||||   |||||| ||||||| |||||| ||||| ||| || | |||||||| |||||||    
T  26143724 ataattgaactttattttatcttttgctatagaaatagcttatacacaagtgc-tatcatggtaagtgcttgtgttataaactgcaaataagttgtttat 26143822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 32364794 - 32364873
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagt 172  Q
    ||||||||| |||| |||||||  ||||||| |||   | |||||||||||||||||  |||||||||||||||||||||    
T  32364794 agcttatacgaaaacaatttaatgttattttatctgaagttatagaaatagcttatacataagtgcttatcatgataagt 32364873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 36114586 - 36114669
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgata 169  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||| | ||||||| ||| ||||   ||||  ||||||||||||    
T  36114586 aacttattgcttatacaaaaacaatttaactttattttatcttttgttatagaactaggttatgcataagcacttatcatgata 36114669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 39567888 - 39567825
Alignment:
Q  108 aatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||||||||||| ||||| | |||||||||| ||||||   |||||||||||||||||||    
T  39567888 aatttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataag 39567825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 43199421 - 43199358
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||||| || |||||||||||||||||| ||||| | | |||||||| ||||||    
T  43199421 aacttatagcttatacgaagataatttaactttattttatcttttgttgtagaaataacttata 43199358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 12464533 - 12464598
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||| |||||||| |||||||||| |||||||||||||||| |||||   || |||||||||||||    
T  12464533 aatagcttatagcatatacaaaaacaatttaactttattttatctttttctacagaaatagcttat 12464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 27695730 - 27695779
Alignment:
Q  156 tgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||||||||||||||||||||||||||| |  |||||||||| |||||||    
T  27695730 tgcttatcatgataagtgtttgtgctataagctacaaataagttgtttat 27695779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 35459911 - 35459854
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||| |||| ||||| |||||||||| ||||| |||||| ||||||||||||    
T  35459911 tagcttatacgaaaacaatttgactttattttatcttttggtatacaaatagcttata 35459854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 41241196 - 41241257
Alignment:
Q  87 acttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||||| |||||||||| |||||||||| ||||| |||||   ||||||||||||||||    
T  41241196 acttatagcatatacaaaaacaatttaacttcattttatcttttcctatagaaatagcttat 41241257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 43199856 - 43199893
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttatttt 123  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  43199856 aacttatagcttatacaaaaacaatttaactttatttt 43199893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 43570423 - 43570305
Alignment:
Q  84 ataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||| ||||||||| |  |||| |||||||||| ||||| | |||   ||||||| |||||||||   ||| ||||||||||||||||| |||||||||    
T  43570423 ataacgtatagcttaaatgaaaacaatttaacttcattttatattttactatagaattagcttatac--aagcgcttatcatgataagtgcttgtgctat 43570326  T
Q  184 gaattacaaataagctgttta 204  Q
     |  | |||||||||||||||    
T  43570325 aagctgcaaataagctgttta 43570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 29628801 - 29628890
Alignment:
Q  81 agaataacttatagcttatacaaaaataatttaactt-tattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||| ||||||||||||||||||||| ||  |||||| |||||| ||||| | |||||||||| ||| ||  ||||| ||||||||||||||    
T  29628801 agaacaacttatagcttatacaaaaacaa--taacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 29628890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 40682483 - 40682555
Alignment:
Q  133 tatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||||||||||||||||  |||| ||||| ||||||||| | ||| ||||||| || |||||||| |||||||    
T  40682483 tatagaaatagcttatacataagcgcttaccatgataagcgcttgcgctatgagttgcaaataagatgtttat 40682555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 32592528 - 32592465
Alignment:
Q  142 agcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    ||||||||  |||| |||||| |||||||||||||||||||| |  |||||||||| |||||||    
T  32592528 agcttatacataagcgcttataatgataagtgtttgtgctataagctacaaataagttgtttat 32592465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 35755565 - 35755628
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||| |  |||| ||||| |||||||||||| ||||  |||||||||||||||||    
T  35755565 aacttatagcttacatgaaaacaatttgactttattttctatttgattatagaaatagcttata 35755628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 41170520 - 41170438
Alignment:
Q  96 ttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||| |||||||||||||||||||||| |||     |||| |||||| || || |||||| |||||||||||||||| || ||||||    
T  41170520 ttatagaaaaataatttaactttattttatct-----tatataaatagtttctatgtaagtacttatcatgataagtgcttatgctat 41170438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 3611222 - 3611152
Alignment:
Q  97 tatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatga 167  Q
    |||||||||| ||||||||||||||||  |||| | |||||||||| ||||||  ||||  ||||||||||    
T  3611222 tatacaaaaacaatttaactttattttaccttttgctatagaaataacttatacataagcacttatcatga 3611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 15305664 - 15305602
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||||||  |||||||||||||||||| ||||||| || || | |||| |||||||||||    
T  15305664 aacttatagcaaatacaaaaataatttaacattattttatcatttgctataaaaatagcttat 15305602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 36114420 - 36114342
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    ||||| ||||||||| |||||||||||||||| ||||| |  ||| |||||||| |||  ||||  |||||||||||||    
T  36114420 tagctaatacaaaaacaatttaactttattttatcttttgtcataaaaatagctaatatataagcacttatcatgataa 36114342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 41875718 - 41875792
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    |||| ||||||||| |||| || ||||| | ||||| ||||||| || ||||| |||||||| ||||||||||||    
T  41875718 cttacagcttatacgaaaacaacttaacatcattttatctttggttaaagaaacagcttatacgtaagtgcttat 41875792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 5133777 - 5133716
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||| |||||| ||||| | |||| ||||||||| ||||| | |||||||||||||||||    
T  5133777 cttatatcttatataaaaacagtttatctttattttatcttttgttatagaaatagcttata 5133716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 12313242 - 12313279
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctcttt 129  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  12313242 tagcttaaacaaaaataatttaactttattttatcttt 12313279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 17952770 - 17952827
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||  |||||| ||| |||||||||| ||||| | |||||||||||||||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 44255485 - 44255428
Alignment:
Q  157 gcttatcatgataagtgtttgtgctatgaattacaaataagctgtttatatccaaaca 214  Q
    ||||||||||| |||||||||||| || |  | ||||||||||| |||||||||||||    
T  44255485 gcttatcatgagaagtgtttgtgcaattagctccaaataagctgcttatatccaaaca 44255428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 44600525 - 44600449
Alignment:
Q  109 atttaactttattttctcttt--gggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||||||||| |||||  || |||||||||||||||||  ||||  ||||||| ||||||||| | ||||||    
T  44600525 atttaactttattttatctttttggctatagaaatagcttatacataagcacttatcacgataagtgtctatgctat 44600449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 23747299 - 23747227
Alignment:
Q  98 atacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||| |||||||||||| || ||||| ||||| | |||| ||||||||||||  |||||| ||||||| ||||    
T  23747299 atacgaaaataatttaaattcattttatcttttgatataaaaatagcttatacataagtgtttatcatcataa 23747227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 31461426 - 31461382
Alignment:
Q  105 aataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||| |||||||||| ||||| | |||||||||||||||||    
T  31461426 aataatttgactttattttatcttttgttatagaaatagcttata 31461382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 44439426 - 44439486
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||||||| | |||||||||||||| | ||| | ||| |||||| ||||||    
T  44439426 ttatagcttatacaaaaacagtttaactttattttatattttgttatggaaataacttata 44439486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 44786477 - 44786549
Alignment:
Q  95 cttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatga 167  Q
    ||||||||| || |||||||||| ||||| |||||   | |||||||||||||||  |||||||||| |||||    
T  44786477 cttatacaacaacaatttaacttaattttatctttaattgtagaaatagcttatacataagtgcttaccatga 44786549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 38578534 - 38578471
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||    
T  38578534 aacttatagcttatacaaaaataatttaactttatgttatcttttgttatagaaatagcttata 38578471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 9656655 - 9656557
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaata----gcttataggtaagtgcttatcatgataagtgtttgtgcta 182  Q
    |||||||||||||  ||||||||||||||||||||| | ||| | ||||||||||    |||||||  || ||||||||||||||||||||||||||||    
T  9656655 cttatagcttatatgaaaataatttaactttattttattttttgctatagaaataaatagcttatacataggtgcttatcatgataagtgtttgtgcta 9656557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 37842001 - 37841908
Alignment:
Q  90 tatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    |||||||||||| |||| |||||||||||||||| || || | ||||| |||||||||||  | ||| |||||||||||||||| || ||||||    
T  37842001 tatagcttatacgaaaacaatttaactttattttatcatttgttataggaatagcttatacatgagtacttatcatgataagtgcttatgctat 37841908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 51190866 - 51190784
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||||| |||||||||||| |||||||||||||||| ||||| | | || ||||||||| ||  |||||| ||||||||||||    
T  51190866 cttataacttatacaaaaacaatttaactttattttatcttttgctttacaaatagcttttaaataagtgtttatcatgataa 51190784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 9572173 - 9572230
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagct 145  Q
    ||||||||||||||||||  |||||||||||||||| ||||| | |||||||||||||    
T  9572173 cttatagcttatacaaaagcaatttaactttattttatcttttgctatagaaatagct 9572230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 4256108 - 4256168
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||| ||||||||||||||||||| | ||||| | | |||||||||||||||    
T  4256108 ttatagcttatacgaaaataatttaactttattgtatcttttgttgtagaaatagcttata 4256168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 34619445 - 34619504
Alignment:
Q  90 tatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||||||| |||||||| ||||||| ||||| | ||||||||| |||||||    
T  34619445 tatagcttatacaaaaacaatttaaccttattttatcttttgttatagaaatggcttata 34619504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 836399 - 836481
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcat 165  Q
    |||||||||||||||||||||||| ||||||  |||||||| |||||   |||| |||||||||| |  |||||| |||||||    
T  836399 aataacttatagcttatacaaaaacaatttagttttattttatctttcactataaaaatagcttacacataagtgtttatcat 836481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 10809357 - 10809295
Alignment:
Q  81 agaataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatag 143  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||| ||| | || ||||||||    
T  10809357 agaacaacttatagcttacacaaaaatactttaactttattttctattttgttacagaaatag 10809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 15477587 - 15477542
Alignment:
Q  84 ataacttatagcttatacaaaaataatttaactttattttctcttt 129  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||    
T  15477587 ataacttatagcatatacaaaaacaatttaactttattttatcttt 15477542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 37517254 - 37517319
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||||||||   |||||||||| |||||||||||||||| | ||| |||||||||||| |||||    
T  37517254 aataacttataatatatacaaaaacaatttaactttattttatattttggtatagaaataacttat 37517319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 45975691 - 45975578
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattaca 191  Q
    ||||||||||||||||| ||  | | |||||| || ||   |||| |||||| |||||  |||| ||||||||||||||||||||||| ||| |  ||||    
T  45975691 tagcttatacaaaaatatttgtagtctattttatcctttcctatataaatagtttatacataagggcttatcatgataagtgtttgtgttataagctaca 45975592  T
Q  192 aataagctgtttat 205  Q
    |||||||| |||||    
T  45975591 aataagctatttat 45975578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 7028292 - 7028236
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||| || ||||||||||||| ||||| | ||||||||||| |||||    
T  7028292 agcttatacaaaaacaacttaactttattttatcttttgctatagaaatagtttata 7028236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 24915116 - 24915176
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||||| |||||||||| |||||||||||||||| ||||  | ||||||||||| ||||    
T  24915116 cttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagtttat 24915176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 1510438 - 1510501
Alignment:
Q  142 agcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    ||||||||  ||||||||||||| |||||| | ||||||||| |  ||||||||||||||||||    
T  1510438 agcttatatataagtgcttatcaagataagcgcttgtgctataagatacaaataagctgtttat 1510501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 5894274 - 5894345
Alignment:
Q  134 atagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    ||||||||||||||||  |||| |||||||||||||||   ||||||||| |  | ||||||||||||||||    
T  5894274 atagaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttat 5894345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 33339499 - 33339546
Alignment:
Q  102 aaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||| |||||||| ||||| ||||| |||||||||||||||||||    
T  33339499 aaaaatagtttaacttcattttatcttttggtatagaaatagcttata 33339546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 34290241 - 34290127
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaat 187  Q
    ||||||||||||||||||  || ||||||||||||| ||||  |||| ||   ||| |||||  |||| ||||||||| ||||| |||| |||| | |||    
T  34290241 cttatagcttatacaaaataaaattaactttattttatcttgcggtacag---tagtttatatataagcgcttatcataataagcgtttatgctgtaaat 34290145  T
Q  188 tacaaataagctgtttat 205  Q
    | |||||||| |||||||    
T  34290144 tgcaaataagatgtttat 34290127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 39658545 - 39658596
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaa 139  Q
    |||||||||||||| ||||||||||||||||| ||| ||||| | |||||||    
T  39658545 cttatagcttatacgaaaataatttaactttactttatcttttgctatagaa 39658596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 48064316 - 48064261
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaat 141  Q
    |||||||| |||||||||||||| ||| |||||||||| ||||| | |||||||||    
T  48064316 aacttataacttatacaaaaatagttttactttattttatcttttgctatagaaat 48064261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 13810001 - 13809943
Alignment:
Q  90 tatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||| |||||||||| |||||||||||||||| ||||| | || ||||||| |||||    
T  13810001 tatagcatatacaaaaacaatttaactttattttatcttttgctaaagaaataacttat 13809943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 15687142 - 15687196
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagctt 146  Q
    |||||||||| |||| |||||||||||||||| | ||| | ||||||||||||||    
T  15687142 tagcttatacgaaaacaatttaactttattttatattttgttatagaaatagctt 15687196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 38170758 - 38170820
Alignment:
Q  89 ttatagcttatacaaaaataatttaac-tttattttctctttgggtatagaaatagcttatag 150  Q
    ||||||||||||| ||||||||||||| |||||||| ||||| | | |||||||| |||||||    
T  38170758 ttatagcttatacgaaaataatttaacttttattttatcttttgttgtagaaatatcttatag 38170820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 1432519 - 1432446
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    |||||||||||| ||||| |||| |||| |||||| |||||   |||||||||||||||||  || ||||||||    
T  1432519 ttatagcttataaaaaaacaattgaactctattttatcttttactatagaaatagcttatacatatgtgcttat 1432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 4700132 - 4700205
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    |||||||||||||  |||| |  |||||||||||| ||||| | |||||||||||||| ||  |||||||||||    
T  4700132 ttatagcttatacggaaatgaagtaactttattttatcttttgttatagaaatagcttgtacataagtgcttat 4700205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 7472316 - 7472256
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||| ||||||||||| |||||||| ||||| | ||||| | |||||||||||||||||    
T  7472316 cttatagattatacaaaaacaatttaac-ttattatatcttttgttatagaaatagcttata 7472256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 27145796 - 27145861
Alignment:
Q  84 ataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||  |||||| |||||||||||| |||||||| ||| | | | |||||||||||||||    
T  27145796 ataacttataaattatacgaaaataatttaaatttattttatctgttgttgtagaaatagcttata 27145861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 1829020 - 1829136
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatga 185  Q
    ||||||||| |||||| |||| |||| ||||  ||||| ||||| | |||| ||||  ||||||  |||| |||||||||||||||||||| ||||||      
T  1829020 aacttatagattatactaaaacaattaaact--atttt-tcttttgttataaaaatgacttatacataagcgcttatcatgataagtgtttatgctatag 1829116  T
Q  186 attacaaataagctgtttat 205  Q
     || |||||||| |||||||    
T  1829117 gtttcaaataagttgtttat 1829136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 3495701 - 3495788
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttatttt-ctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgttt 176  Q
    |||||| |||||||||  |||||||||||||||||  ||||| | |||||||| ||||||||  | |||| |||| |||||||||||||    
T  3495701 ttataggttatacaaacgtaatttaactttattttattcttttgttatagaaaaagcttatacat-agtgtttataatgataagtgttt 3495788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 4445707 - 4445639
Alignment:
Q  94 gcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    |||||| |||||| |||||||||||||| | | ||| | |||||||||||| ||||  |||||||||||    
T  4445707 gcttatgcaaaaaaaatttaactttattgtattttttgttatagaaatagcctatacataagtgcttat 4445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 10808646 - 10808602
Alignment:
Q  81 agaataacttatagcttatacaaaaataatttaactttattttct 125  Q
    |||| ||||||||||||| ||||||| | ||||||||||||||||    
T  10808646 agaacaacttatagcttacacaaaaacactttaactttattttct 10808602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 14331731 - 14331667
Alignment:
Q  141 tagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||||||||  |||||||||||||||| ||| | ||||||||| |  | ||||||||||||||||    
T  14331731 tagcttatacataagtgcttatcatgagaagcgcttgtgctataagcttcaaataagctgtttat 14331667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 29793789 - 29793729
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagctt 146  Q
    |||||||||||||||| |||| || |||||||||| || ||||| | | ||||||||||||    
T  29793789 aacttatagcttatacgaaaacaacttaactttatgttatcttttgttgtagaaatagctt 29793729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 36151571 - 36151631
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||| ||||||| |||| ||||| |||||||||| ||||| | ||| |||||||||||||    
T  36151571 ttataacttatacgaaaacaatttgactttattttatcttttgttattgaaatagcttata 36151631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 47432101 - 47432041
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||||| ||| |||||| |||||||||||||||| |||||   |||| |||||||||||    
T  47432101 cttatagcatattcaaaaacaatttaactttattttatctttttctataaaaatagcttat 47432041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 47498906 - 47498942
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctcttt 129  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  47498906 agcttatacgaaaataatttaactttattttatcttt 47498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 48830142 - 48830202
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||  |||||| ||| |||||||||| |||||||  ||||||||| ||||||    
T  48830142 ttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttata 48830202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 20881699 - 20881815
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatga 185  Q
    |||||||||||| |||  ||| ||||||||||  |||| ||||| | |||||| |||||| |||  |||| ||||||||||||||||| ||||||||| |    
T  20881699 aacttatagcttgtacggaaacaatttaacttcgttttatcttttgctatagatatagctcatacataagagcttatcatgataagtgcttgtgctataa 20881798  T
Q  186 attacaaataagctgtt 202  Q
    | |||||||||| ||||    
T  20881799 actacaaataagttgtt 20881815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 42656517 - 42656437
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||||||||||||| |||| |||||||||| ||||| | |||||||||||||||||  |||||||||||  |||||||    
T  42656517 atagcttatacaaaaatgatttgactttattttatcttttgttatagaaatagcttatatataagtgcttattttgataag 42656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 49060550 - 49060484
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||||||| ||||||||||| |||||||||| | ||| | |||||||||||||||||    
T  49060550 aataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttata 49060484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 21619367 - 21619317
Alignment:
Q  133 tatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  21619367 tatagaaatagcttagagataagtgcttatcatgataagtgcttgtgctat 21619317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 47795959 - 47795845
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaatt 188  Q
    |||||||||||| ||||| |||||||||| |||| || ||  | ||||||||||| |||||  |||||| ||||||||||||| | || |||||| |  |    
T  47795959 ttatagcttatataaaaacaatttaacttaatttactttt--gatatagaaataggttatacataagtggttatcatgataagcgcttatgctataagct 47795862  T
Q  189 acaaataagctgtttat 205  Q
     ||||||||||||||||    
T  47795861 gcaaataagctgtttat 47795845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 40689051 - 40689107
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagc 144  Q
    |||||||||||||  ||||||||||||||||||||| ||||| | ||||||||||||    
T  40689051 cttatagcttatatgaaaataatttaactttattttatcttttgctatagaaatagc 40689107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 28613597 - 28613660
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||| |||||||||||| ||||||||||| |||| ||||| | |||| ||||||||||||    
T  28613597 aacttataacttatacaaaaacaatttaactttgttttatcttttgttataaaaatagcttata 28613660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 34083590 - 34083644
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaata 142  Q
    ||||||||||||||| ||| |||||||||||||||| ||||| | ||||||||||    
T  34083590 cttatagcttatacacaaacaatttaactttattttatcttttgctatagaaata 34083644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 40009477 - 40009391
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagt 172  Q
    ||||||||| ||||  ||||| |||||||||||||||| ||||| | |||| ||| ||||||||  |||| ||| ||||||||||||    
T  40009477 aacttatagattatggaaaaacaatttaactttattttgtcttttgttataaaaacagcttatacataagcgctaatcatgataagt 40009391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 30570991 - 30571056
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||| |||||||| |||||||||||||||||||||||||||  |||| | |||| || ||||||||    
T  30570991 aatagcttatagcatatacaaaaataatttaactttattttacctttcgctatataagtagcttat 30571056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 36874028 - 36874104
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    |||||||||||||||  ||||||||| || |||||||| || ||   |||||||||||||||||  |||||||||||    
T  36874028 aacttatagcttataagaaaataattcaaatttattttatcatttcttatagaaatagcttatacataagtgcttat 36874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 33673082 - 33672988
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||||||||||| |||||||||  ||||||| || || | ||||||| |||||||||  |||| ||||||||| |||| |  |||||||||    
T  33673082 cttatagcttatacaaatataatttaa-gttattttatcctttgctatagaagtagcttatacataagcgcttatcataataaatacttgtgctat 33672988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 43152981 - 43153028
Alignment:
Q  102 aaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||| |||||||||||||||| ||||| | |||||||||||||||||    
T  43152981 aaaaacaatttaactttattttatcttttgttatagaaatagcttata 43153028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 45813243 - 45813306
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||| |||||  |||| || || |||||||||| ||||| |||||||||||||||||||    
T  45813243 aacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagcttata 45813306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 47177641 - 47177546
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    |||||||||||||  |||| ||||||||||| |||| | ||| | |||||||||| ||||||   ||| ||||||||| ||||||| || ||||||    
T  47177641 cttatagcttatatgaaaacaatttaactttgttttgtattttgatatagaaataccttatacagaagggcttatcatcataagtgcttatgctat 47177546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 30180056 - 30180002
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaata 142  Q
    |||||||||||||| |||| |||||||||||||||| ||||| | ||| ||||||    
T  30180056 cttatagcttatacgaaaacaatttaactttattttatcttttgctatcgaaata 30180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 13960923 - 13960886
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttatttt 123  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  13960923 aacttataggttatacaaaaacaatttaactttatttt 13960886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 22283810 - 22283851
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttg 130  Q
    |||||||| ||||||||| |||||||||||||||| ||||||    
T  22283810 ttatagctgatacaaaaacaatttaactttattttatctttg 22283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 33601472 - 33601509
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttatttt 123  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  33601472 aacttatagcaaatacaaaaataatttaactttatttt 33601509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 38500057 - 38500110
Alignment:
Q  152 taagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||| ||||||||||||||| | ||||||||| || | ||||||||||||||||    
T  38500057 taagcgcttatcatgataagcgcttgtgctataaactgcaaataagctgtttat 38500110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 8094280 - 8094240
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttatttt 123  Q
    ||||||||||||||||||| |||  ||||||||||||||||    
T  8094280 aataacttatagcttataccaaaccaatttaactttatttt 8094240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 33552931 - 33553003
Alignment:
Q  133 tatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||||||||||||||||  |||| |||||||||| |||||| |||||| || |  | |||||||| |||||||    
T  33552931 tatagaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttat 33553003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 33678785 - 33678672
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaat 187  Q
    |||||||||| ||||||||  ||||||||||| ||| ||||| | ||| | || ||||||||  ||||  ||||||||||||||   ||||||||| |      
T  33678785 cttatagcttttacaaaaaccatttaactttactttatcttttgctatgggaagagcttata--taagctcttatcatgataagcacttgtgctataaga 33678688  T
Q  188 tacaaataagctgttt 203  Q
    | ||||||||||||||    
T  33678687 tgcaaataagctgttt 33678672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 3155604 - 3155525
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||||  ||  ||||||||||||||||    
T  3155604 tagcttgtacaaaaacaatttaactttattttatcttttgctatagaaatagcttatacatacatgcttatcatgataag 3155525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 26520289 - 26520376
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||| ||||||||||| || |||| |||||||||||||||  ||||| | |||||||| || |||||  |||||||||||||||||||    
T  26520289 aatagcttatagcttacacgaaaacaatttaactttatttcatcttttgttatagaaacagtttatacataagtgcttatcatgataa 26520376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 56480353 - 56480271
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtg-cttatcatgata 169  Q
    |||||| |||||||| ||| |||||||||||||||| ||||| | ||| ||||||||||||| |||||||  |||||||||||    
T  56480353 cttataacttatacataaacaatttaactttattttgtcttttgttatggaaatagcttatacgtaagtgttttatcatgata 56480271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 17884075 - 17884014
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagctta 147  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  17884075 aactgataacttatacaaaaacaatttaactttattttatcttttgttatagaaatagctta 17884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 2987191 - 2987112
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||||||||||| ||| |  ||||||||||||| | ||| | | |||||||||||||||  |||||||||||||||||||    
T  2987191 atagcttatacataaacatcttaactttattttattttttgttgtagaaatagcttataaataagtgcttatcatgataa 2987112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 6364134 - 6364071
Alignment:
Q  108 aatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||| |||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||    
T  6364134 aatttcactttattttatcttttgttatagaaatagcttatacataagtgcttatcttgataag 6364071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 28300365 - 28300415
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaa 139  Q
    |||||||||||||||||| |||||||||||||||| ||||||  |||||||    
T  28300365 ttatagcttatacaaaaacaatttaactttattttttctttgattatagaa 28300415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 4071889 - 4071832
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatag 143  Q
    |||||||||||||||  |||||||||| |||||||||| ||||| | |||||||||||    
T  4071889 aacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 44249285 - 44249208
Alignment:
Q  94 gcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||||  ||||||||||||||| |||| ||||| | ||| |||||| ||||||  ||| ||||||||||||||||    
T  44249285 gcttatacggaaataatttaactttgttttatcttttgttattgaaataacttatacataattgcttatcatgataag 44249208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 23503553 - 23503481
Alignment:
Q  99 tacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||||||||||||||||||||| | ||| | ||||||| ||| |||||  ||||  ||||||||||||||    
T  23503553 tacaaaaataatttaactttattttatattttgttatagaattagattatacataagcacttatcatgataag 23503481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 51630121 - 51630033
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||| | |||| |||||||||  |   ||||||||||||| |||||    
T  51630121 aatagcttatagcttatatcaaaacaatttaactttattttatcttttgctatataaatagcttgaacacaagtgcttatcataataag 51630033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 22030215 - 22030149
Alignment:
Q  81 agaataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||| |||||||||| |||||||||||||| |||||||||||| || ||   ||||||||||||||||    
T  22030215 agaacaacttatagcatatacaaaaataatataactttattttatcctt-tctatagaaatagcttat 22030149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 25885866 - 25885807
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagct 145  Q
    ||||||||||||| || |||| |||||||||||||||| ||||| | |||||||| ||||    
T  25885866 aacttatagcttacacgaaaacaatttaactttattttatcttttgctatagaaagagct 25885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 49219146 - 49219083
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||||  |||||||||| |||||||||| | ||| | |||||||||| ||||||    
T  49219146 aacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttata 49219083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 7601755 - 7601689
Alignment:
Q  97 tatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatc 163  Q
    |||||||||| |||||||||||||||| || || | ||||| |||||||||||  |||| |||||||    
T  7601755 tatacaaaaacaatttaactttattttatcctttgctataggaatagcttatacataagcgcttatc 7601689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 21953278 - 21953217
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||| ||||| | ||| ||||||||||| |||| | ||||||||||| |||||    
T  21953278 cttatagcttatataaaaagagtttgactttattttcccttttgttatagaaatagtttata 21953217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 47800630 - 47800581
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaata 142  Q
    |||||||||||||| | |||||||||||||| ||||| | ||||||||||    
T  47800630 agcttatacaaaaacattttaactttattttatcttttgttatagaaata 47800581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 47119028 - 47119084
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaata 142  Q
    |||||||||||||||  |||| ||||||||||| |||| ||||| | ||||||||||    
T  47119028 aacttatagcttatatgaaaacaatttaactttgttttatcttttgatatagaaata 47119084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 47946202 - 47946142
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||||| |||| |||||||||| ||||| ||||  | |||||||||| ||||||    
T  47946202 ttatagcttatacgaaaacaatttaacttcattttatcttacgttatagaaataacttata 47946142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 30956689 - 30956751
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||||||| |||||||||| |||||||||||||||| ||||| | ||||||||||||||||    
T  30956689 aacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttat 30956751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 30972501 - 30972563
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||||||| |||||||||| |||||||||||||||| ||||| | ||||||||||||||||    
T  30972501 aacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttat 30972563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 44061086 - 44061162
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    ||||||||||||||| ||||| |||||||| ||||||| ||||| | |||||||||||||||||   ||||||||||    
T  44061086 aacttatagcttatagaaaaacaatttaaccttattttatcttttgctatagaaatagcttatacagaagtgcttat 44061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 42808979 - 42808919
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggta 153  Q
    |||||||| ||||| |||||||||||||||| ||||| | |||||||| ||||||||||||    
T  42808979 agcttatataaaaacaatttaactttattttatcttttgttatagaaacagcttataggta 42808919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 32095256 - 32095338
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||| ||||||||||| |||||||||| ||||| ||||| | |||||||||| ||||||  | ||||||||| ||||||||    
T  32095256 cttatagtttatacaaaaacaatttaacttaattttatcttttgttatagaaataacttatatatgagtgcttat-atgataag 32095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 34638034 - 34638125
Alignment:
Q  93 agcttatacaaaaataatttaacttta-ttttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||| |||| |||||||||||| |||| |||||   |||||||||||||||||  |||| | ||||||||||||||||  |||||||    
T  34638034 agcttatacgaaaacaatttaactttaattttatctttttctatagaaatagcttatatataagcggttatcatgataagtgtccgtgctat 34638125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 1395673 - 1395615
Alignment:
Q  91 atagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||||  |||||||||| |||||||||| ||||| | |||||||||||||||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 25447310 - 25447392
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||||||||||||| ||||||| |||||||| |||||   ||||||||||| ||| |   |||||||| ||||||||||    
T  25447310 ttatagcttatacaaaaacaatttaagtttattttatcttttactatagaaatagtttacacaaaagtgcttctcatgataag 25447392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 28240329 - 28240236
Alignment:
Q  92 tagcttatacaaaaataatttaactttat--tttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    ||||||||||||||||||||||||||| |  ||| ||||| | ||| ||||||||||| |  ||||  |||||||||||||| | |||||||||    
T  28240329 tagcttatacaaaaataatttaactttttcatttatcttttgctatcgaaatagcttaaatataagcacttatcatgataagcgcttgtgctat 28240236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 35959519 - 35959581
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||| ||| ||||||||||||||||||||||||||| || ||   ||||||||||||||||    
T  35959519 aacttacagcatatacaaaaataatttaactttattttatccttttctatagaaatagcttat 35959581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 30573981 - 30574059
Alignment:
Q  90 tatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    ||||| ||||| ||||| || ||||||||||||| |||||   |||||||||||||||||  |||| ||||||||||||||    
T  30573981 tatagattataaaaaaaaaacttaactttattttatctttt--tatagaaatagcttatacataagcgcttatcatgataa 30574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 31403365 - 31403280
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||| || ||||||| |||| | |||||||| ||||| ||||| | ||| |||||||||||||  ||||||||||| ||||||||    
T  31403365 aacttgtatcttatacgaaaacattttaacttcattttatcttttgatatggaaatagcttatatataagtgcttatgatgataag 31403280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 8142775 - 8142892
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatga 185  Q
    ||||||| || ||||||||| ||||  || |||||||| ||||| | |||| ||||||||||||  |||   |||||| | |||| |||||||| ||| |    
T  8142775 aacttatggcatatacaaaactaat--aaatttattttatcttttgatataaaaatagcttatacataaacacttatcgtaataaatgtttgtgttataa 8142872  T
Q  186 attacaaataagctgtttat 205  Q
    |||||||||||| |||||||    
T  8142873 attacaaataagttgtttat 8142892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 36445724 - 36445676
Alignment:
Q  101 caaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||| ||| |||||||||||||||||| | |||||||||||||||||    
T  36445724 caaaaagaatctaactttattttctcttttgttatagaaatagcttata 36445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 2719410 - 2719347
Alignment:
Q  142 agcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||||||  ||||||||||||||||||||| ||||||||||| |  |  |||||||||||||||    
T  2719410 agcttatgcgtaagtgcttatcatgataagcgtttgtgctataagctgtaaataagctgtttat 2719347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 29771816 - 29771753
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||| |||||  |||||||||| |||||| ||| ||||| |||||||||||| ||||||    
T  29771816 aacttatagtttatatgaaaataatttcactttactttgtcttttggtatagaaataacttata 29771753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 37689450 - 37689509
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    ||||||||||||  ||||||||||||||||| ||| ||||| | |||| |||||||||||    
T  37689450 ttatagcttatatgaaaataatttaactttactttatcttttgttataaaaatagcttat 37689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 2128331 - 2128377
Alignment:
Q  103 aaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttata 2128377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 35127437 - 35127519
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||||| ||| |||||| |||||||||||| | | ||||| | |||||||||||| ||||  ||||  ||||||||||||||    
T  35127437 ttatagcatatgcaaaaacaatttaactttagtatatcttttgttatagaaatagcctatacataagcacttatcatgataag 35127519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 36189576 - 36189510
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||| |||||| | |||||||||| |||||||||||||||| ||||| |  | ||||||||||||||    
T  36189576 aatagcttatatcatatacaaaaacaatttaactttattttatcttttgtaagagaaatagcttata 36189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 39980660 - 39980610
Alignment:
Q  152 taagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtt 202  Q
    ||||||||||||||||||||||||||| |||| |  | |||||||||||||    
T  39980660 taagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 39980610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 14145922 - 14145877
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctt 128  Q
    ||||||||||||| ||||| |||| |||||||||||||||| ||||    
T  14145922 aataacttatagcatatacgaaaacaatttaactttattttatctt 14145877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 15304427 - 15304472
Alignment:
Q  103 aaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||| |||||||||||||||| ||||| | ||||||||||||||||    
T  15304427 aaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 20257542 - 20257505
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttatttt 123  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  20257542 aacttatagcatatacaaaaacaatttaactttatttt 20257505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 20669139 - 20669102
Alignment:
Q  133 tatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||||||||||||||||  |||||||||||||||||||    
T  20669139 tatagaaatagcttatacataagtgcttatcatgataa 20669102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 34235155 - 34235224
Alignment:
Q  102 aaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    ||||| || ||||||||||||| | ||| | ||| |||||||||| ||  ||||||||||||||||||||    
T  34235155 aaaaaaaaattaactttattttatattttgctatggaaatagcttctacataagtgcttatcatgataag 34235224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 35364299 - 35364262
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttatttt 123  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  35364299 aacttataacttatataaaaataatttaactttatttt 35364262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 38462285 - 38462225
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||| ||||  |||| | ||| |||||||||| ||||| |||||||||||||||||||    
T  38462285 ttatagcatatatgaaaacagtttgactttattttatcttttggtatagaaatagcttata 38462225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 42809301 - 42809245
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    ||||||||  |||| ||||||||| |||||| ||||| | |||||||||||||||||    
T  42809301 agcttatatgaaaacaatttaactatattttatcttttgttatagaaatagcttata 42809245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 46030971 - 46030911
Alignment:
Q  110 tttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||||||||||||| |||||   ||| |||||||||||||  |||||| ||||||||||||    
T  46030971 tttaactttattttatctttttctatcgaaatagcttatatataagtgtttatcatgataa 46030911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 21348 - 21433
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgt 178  Q
    ||||||||| |||| |||||||||||||||| |||||   |||| ||||||||||||  ||||||||||||||| ||||| |||||    
T  21348 agcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcatggtaagtctttgt 21433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 58937 - 58857
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtg 173  Q
    ||||||||| |||| ||||||||||||||||  ||||   |||| |||||||||| |  |||||||| |||||||||||||    
T  58937 agcttatacgaaaacaatttaactttattttaacttttcctataaaaatagcttacacataagtgctgatcatgataagtg 58857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 16210949 - 16211046
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctat 183  Q
    |||||||||||||||  |||| ||| |||||||||||| || ||   |||||||||||||||||  | ||||| |||||||||||||| |||||||||    
T  16210949 aacttatagcttatatgaaaacaatgtaactttattttatcatttactatagaaatagcttatacatgagtgcgtatcatgataagtgcttgtgctat 16211046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 41475133 - 41475242
Alignment:
Q  96 ttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaata 195  Q
    |||||| |||| ||||||||| |||||| ||||| | |||| || |||||||||  |||||||||||||||| ||||||||||  ||| | || ||||||    
T  41475133 ttatacgaaaacaatttaactgtattttatcttttgctataaaattagcttatacataagtgcttatcatgacaagtgtttgtcttataagttgcaaata 41475232  T
Q  196 agctgtttat 205  Q
    || |||||||    
T  41475233 agttgtttat 41475242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 37444485 - 37444565
Alignment:
Q  93 agcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtg 173  Q
    ||||||||| |||| |||||||||||| ||| ||||| | ||||| |||||||||||  |||| |||||||||||||||||    
T  37444485 agcttatacgaaaacaatttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcatgataagtg 37444565  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 26215493 - 26215418
Alignment:
Q  96 ttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||| |||||| |||||||||||||| ||||| | |||||||||||||||||  |||| ||||||||| |||||    
T  26215493 ttatacgaaaatagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttatcattataag 26215418  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 8407394 - 8407322
Alignment:
Q  109 atttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgct 181  Q
    ||||||||||||||| ||||| || ||||||||  |||||| ||||| || ||||||||||| ||||||||||    
T  8407394 atttaactttattttatcttttggcatagaaatgacttatacgtaagcgcatatcatgataattgtttgtgct 8407322  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28763298 - 28763250
Alignment:
Q  158 cttatcatgataagtgtttgtgctatgaattacaaataagctgtttata 206  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  28763298 cttatcatgataagtgtttatgctataagttacaaataagctgtttata 28763250  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 3537098 - 3537177
Alignment:
Q  90 tatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgata 169  Q
    |||||||||||| |||| ||||| |||||||||| ||||| | ||||||||| |||||||   |||||||||||| ||||    
T  3537098 tatagcttatacgaaaacaatttgactttattttatcttttgctatagaaattgcttatacaaaagtgcttatcacgata 3537177  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 4558803 - 4558742
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||| ||||  ||||||||||||||||||||| |||||   |||||||||||||||||    
T  4558803 cttatagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttata 4558742  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 7646210 - 7646150
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||| ||||||||||| ||||||||||||||||  ||||   |||||||||||||||||    
T  7646210 ttatagattatacaaaaacaatttaactttattttaccttttcttatagaaatagcttata 7646150  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 9956902 - 9956994
Alignment:
Q  113 aactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    ||||||||||| ||||| | ||||||||||||| | |  |||| |  |||||||||||||| ||||||||| |  |||||||||| |||||||    
T  9956902 aactttattttatcttttgttatagaaatagctcaaacataagcgtgtatcatgataagtgcttgtgctataagctacaaataagttgtttat 9956994  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 29205818 - 29205758
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatag 143  Q
    ||||||||||||| |||||||||| |||||||||| ||||| |||||   |||||||||||    
T  29205818 aataacttatagcatatacaaaaacaatttaacttcattttatctttttctatagaaatag 29205758  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 3936854 - 3936771
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 171  Q
    |||||||||||||  || | |||||| ||||||||| || || | ||||||||||| |||||  ||||||| ||||||||||||    
T  3936854 cttatagcttataggaagacaatttagctttattttatcctttgttatagaaatagattatacataagtgcctatcatgataag 3936771  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 27049371 - 27049301
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgctt 160  Q
    ||||||||||||| ||||||||| ||||||| ||| ||||| | ||||||||||  ||||| ||||||||||    
T  27049371 ttatagcttatacgaaaataattgaacttta-tttatcttttgctatagaaataaattatacgtaagtgctt 27049301  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 10114494 - 10114413
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataa 170  Q
    |||||||||||||| |||| |||| ||||| ||||| ||||| | |||||||||||||||||  ||||  |||||||| ||||    
T  10114494 cttatagcttataccaaaacaattcaactt-attttatcttttgctatagaaatagcttatacataagcacttatcatcataa 10114413  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 34173162 - 34173196
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactt 117  Q
    ||||||||||||||||||| |||||||||||||||    
T  34173162 aataacttatagcttatacgaaaataatttaactt 34173196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 35374439 - 35374493
Alignment:
Q  89 ttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatag 143  Q
    ||||||||||||  |||| |||||||||||||||| ||||| | |||||||||||    
T  35374439 ttatagcttatatgaaaacaatttaactttattttatctttcgctatagaaatag 35374493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 1470921 - 1470982
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||||  ||| |||||| |||||||||| |||||   |||||||||||||||||    
T  1470921 cttatagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttata 1470982  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 10758319 - 10758376
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatag 143  Q
    |||||||||| |||||||||| |||||||||||||||| |  || | |||||||||||    
T  10758319 aacttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatag 10758376  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 11000626 - 11000687
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttata 149  Q
    |||||||||||| | |||| ||||| |||||||||| ||||| | ||| |||||||||||||    
T  11000626 cttatagcttattcgaaaacaatttgactttattttatcttttgttatggaaatagcttata 11000687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 12830265 - 12830232
Alignment:
Q  81 agaataacttatagcttatacaaaaataatttaa 114  Q
    |||||| |||||||||||||||||||||||||||    
T  12830265 agaatagcttatagcttatacaaaaataatttaa 12830232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 30657890 - 30657943
Alignment:
Q  152 taagtgcttatcatgataagtgtttgtgctatgaattacaaataagctgtttat 205  Q
    |||| |||||||||||| | |||||||||||| || |||||||||| |||||||    
T  30657890 taagcgcttatcatgattaatgtttgtgctataaactacaaataagttgtttat 30657943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 10218950 - 10218910
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttatttt 123  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  10218950 aataacttatagcttatacaaaaacaatttgactttttttt 10218910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 12497296 - 12497356
Alignment:
Q  88 cttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||||||| |||||||||| || ||||||||||||| ||||| | |||| |||| ||||||    
T  12497296 cttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttat 12497356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12976214 - 12976158
Alignment:
Q  92 tagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttat 148  Q
    |||| |||| |||| ||||||||||||||||| | ||| | ||||||||||||||||    
T  12976214 tagcatataaaaaattaatttaactttattttatattttgctatagaaatagcttat 12976158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 31335404 - 31335444
Alignment:
Q  83 aataacttatagcttatacaaaaataatttaactttatttt 123  Q
    |||| ||||||| |||||||||||||| |||||||||||||    
T  31335404 aatagcttatagtttatacaaaaataaattaactttatttt 31335444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 42597408 - 42597332
Alignment:
Q  86 aacttatagcttatacaaaaataatttaactttattttctctttgggtatagaaatagcttataggtaagtgcttat 162  Q
    ||||||||||||  |  |||| ||||| |||||||||| ||||| | |||||||||||||||||  ||||| |||||    
T  42597408 aacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtacttat 42597332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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