View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_1 (Length: 806)
Name: NF15733_low_1
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 46 - 790
Target Start/End: Complemental strand, 40924924 - 40924143
Alignment:
| Q |
46 |
cgtgcaggcactaccgccggagcaagattgagtccaatgaagacacaatgcaggtaacaacaagtacatttctttgaggatgttcatcgcctttttgaaa |
145 |
Q |
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| T |
40924924 |
cgtgcaggcactaccgccggagcaagattgagtccaatgaagacacaatacaggtaacaacaagtacatttctttgaggatgttcatcgcctttttgaaa |
40924825 |
T |
|
| Q |
146 |
ctcatccgttctggagaagaattctgagacaagctgggaaggaccaagaacaaggcatgttgtcgtcaatgggaaactagctagctgttgctgattgaaa |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40924824 |
ctcatccgttctggagaagaattctgagacaagctgggaaggaccaagaacaaggca---cgtcgtcaatgggaaactagctagctgttgctgattgaaa |
40924728 |
T |
|
| Q |
246 |
ttggagggttttgaatgatacatggtcggaatgaagttttctgtggagcacttgctagtat---------------------ttttatgttttctggttt |
324 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40924727 |
ttggcgggttttgaatgatatatggtcggaatgaagttttctgtggagcacttgctagtatttttatgctattttattattattttatgttttctggttt |
40924628 |
T |
|
| Q |
325 |
gcaattctaccttgttgtttcaagaattatcatcttcatataggacacttcagttaatatttctgttaattttgttgaagttctgataattacttagtat |
424 |
Q |
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| T |
40924627 |
gcaattctaccttgttgtttcaagaattatcatcttcatataggacacttcagttaatatttctgttaattttgttgaagttctgataattacttagtat |
40924528 |
T |
|
| Q |
425 |
ttagtttaatcattgttattaaccggtttttaaac--------------actgcggatctatgttagattttgagttgattgacaaaaatttatattagc |
510 |
Q |
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||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924527 |
ttagtttaaccattgttattaactggttcttaaacactgcaaatatgtgactgcggatctatgttagattttgagttgattgacaaaaatttatattagc |
40924428 |
T |
|
| Q |
511 |
atgctcggtgttagttaacaa------------ggatacatcgatactatatgggacaatcttcttctaactctttttcattcagccttgaacattctca |
598 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924427 |
atgctcggtgttagttaacaagtaatatttgagggatacatcgatactatatgggacaatcttcttctaactctttttcattcagccttgaacattctca |
40924328 |
T |
|
| Q |
599 |
atggcccctcagctctgccatcgtcattgcccattggtcaacgtaacctacaacaactgtgaaggatttgttagtttcttagatgaagattacaaagtat |
698 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40924327 |
atggcccctcagctctgccatggt-------cattggtcaacgtaacctacaacaactgtgaaggatttgttagtttcttagatgaagatcacaaagtat |
40924235 |
T |
|
| Q |
699 |
gataccaattctcattttccatactagattcacttcattcacaggcgtttgtgttttatgcttcacttgttttcatccatttctatcttcat |
790 |
Q |
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| T |
40924234 |
gataccaattctcattttccatactagattcgcttcattcactggcgtttgtgttttatgcttcacttgttttcatccatttctatcttcat |
40924143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 34990727 - 34990691
Alignment:
| Q |
371 |
acttcagttaatatttctgttaattttgttgaagttc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34990727 |
acttcagttaatatttctgttaattttgttgaagttc |
34990691 |
T |
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