View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_11 (Length: 301)
Name: NF15733_low_11
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 22727455 - 22727741
Alignment:
| Q |
1 |
tgttcatttgtttattcatctctgatcctcgacctagtttgattcgcaagccccatatgagttgttctcaatcattggaagactctgtgggctaccatca |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
22727455 |
tgttcatttgtttattcatatctgatcctcgacctagtttggttcgcaagccccatatgagttgttctcaatcattggaagactttgtgggccaccatca |
22727554 |
T |
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| Q |
101 |
atctgttcttcttgaagaccttatctctgatcaattatggatcttgttgaatctgggtttatatgttcgcttgagttagttttggttagcccgtcaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |||| |
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| T |
22727555 |
atctgttcttcttgaagaccttatctctgatcaattatggatcttgttgaatctgggtttatatgttcgcttaagttagcttgtgttagcccgtcgaaca |
22727654 |
T |
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| Q |
201 |
cagtttctatttctgtgttgctcgaaagggcgaggc-tcatgatctggagtgttttaggttgattcgtggcaacctgttgttgtcga |
286 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22727655 |
cagtttctatttttgtgttgctcgaaagggcgaggcttcatgatctggagtgttttaggttgatttgtggcaacctgttgttgtcga |
22727741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 22325779 - 22325493
Alignment:
| Q |
1 |
tgttcatttgtttattcatctctgatcctcgacctagtttgattcgcaagccccatatgagttgttctcaatcattggaagactctgtgggctaccatca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||| |||| || ||||||| |
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| T |
22325779 |
tgttcatttgtttatttatctctgatcctcgacctagtttggttcgcaagccccatatgagctgttctcaattatcggaagactttgtgagccaccatca |
22325680 |
T |
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| Q |
101 |
atctgttcttcttgaagaccttatctctgatcaattatggatcttgttgaatctgggtttatatgttcgcttgagttagttttggttagcccgtcaaaca |
200 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22325679 |
atctgttcttcttgaggaccttatctctgatcaattctggatcttgatgaatctgggtttatatgttcgcttgagttagttttggttagcccgtcgaaca |
22325580 |
T |
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| Q |
201 |
cagtttctatttctgtgttgctcgaaagggcgaggc-tcatgatctggagtgttttaggttgattcgtggcaacctgttgttgtcga |
286 |
Q |
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|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22325579 |
caatttctatttctgtgttgctcgaaagggcgaggcttcgtgatctggagtgttttaggttgattcgtggcaacctgttgttgtcga |
22325493 |
T |
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