View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15733_low_15 (Length: 278)

Name: NF15733_low_15
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15733_low_15
NF15733_low_15
[»] chr3 (13 HSPs)
chr3 (5-106)||(45168609-45168711)
chr3 (185-278)||(45168437-45168530)
chr3 (190-275)||(39913377-39913461)
chr3 (189-246)||(43304134-43304191)
chr3 (196-252)||(43306842-43306898)
chr3 (190-252)||(3069045-3069107)
chr3 (194-275)||(41218665-41218744)
chr3 (189-252)||(3063907-3063970)
chr3 (189-252)||(53012882-53012945)
chr3 (195-263)||(25857653-25857720)
chr3 (239-278)||(5128814-5128853)
chr3 (195-278)||(19795115-19795197)
chr3 (191-246)||(19999262-19999317)
[»] chr8 (10 HSPs)
chr8 (189-278)||(22921995-22922084)
chr8 (189-278)||(42890253-42890342)
chr8 (189-278)||(22926793-22926880)
chr8 (209-278)||(42891809-42891878)
chr8 (191-278)||(6845195-6845280)
chr8 (195-278)||(22512191-22512275)
chr8 (192-278)||(37189725-37189811)
chr8 (195-252)||(23573445-23573502)
chr8 (195-278)||(18180828-18180910)
chr8 (195-252)||(23570449-23570503)
[»] chr1 (4 HSPs)
chr1 (189-278)||(50857589-50857678)
chr1 (189-278)||(8931080-8931164)
chr1 (195-252)||(13441769-13441826)
chr1 (207-252)||(13444158-13444203)
[»] chr7 (9 HSPs)
chr7 (189-278)||(4303305-4303394)
chr7 (189-278)||(13882831-13882918)
chr7 (189-278)||(4300412-4300501)
chr7 (189-278)||(13886333-13886420)
chr7 (189-242)||(1220613-1220666)
chr7 (195-275)||(5678360-5678438)
chr7 (195-275)||(5703412-5703490)
chr7 (189-252)||(859326-859389)
chr7 (189-252)||(1217330-1217393)
[»] chr5 (3 HSPs)
chr5 (189-278)||(40778931-40779020)
chr5 (189-278)||(21849116-21849204)
chr5 (199-275)||(19677279-19677353)
[»] chr2 (12 HSPs)
chr2 (209-278)||(27952463-27952532)
chr2 (209-278)||(27956299-27956368)
chr2 (189-252)||(2155823-2155886)
chr2 (189-278)||(33655482-33655571)
chr2 (189-252)||(2165779-2165842)
chr2 (189-252)||(15129274-15129337)
chr2 (190-278)||(22264292-22264379)
chr2 (189-278)||(31633960-31634048)
chr2 (189-244)||(22011288-22011343)
chr2 (226-278)||(8781407-8781458)
chr2 (195-278)||(31636197-31636281)
chr2 (195-270)||(18725747-18725820)
[»] chr6 (8 HSPs)
chr6 (195-278)||(30052064-30052147)
chr6 (189-278)||(3535891-3535978)
chr6 (189-278)||(3542102-3542189)
chr6 (195-278)||(30049777-30049860)
chr6 (189-275)||(29340955-29341040)
chr6 (191-278)||(11190357-11190443)
chr6 (195-266)||(2939848-2939918)
chr6 (227-278)||(26571045-26571094)
[»] chr4 (7 HSPs)
chr4 (196-278)||(6659475-6659556)
chr4 (187-252)||(24667541-24667606)
chr4 (200-252)||(22691178-22691230)
chr4 (227-278)||(13085237-13085286)
chr4 (191-275)||(2053156-2053238)
chr4 (192-275)||(4053007-4053087)
chr4 (246-278)||(13086280-13086312)
[»] scaffold0110 (2 HSPs)
scaffold0110 (195-278)||(46849-46932)
scaffold0110 (195-278)||(45407-45490)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 45168711 - 45168609
Alignment:
Q  5 agaaaggctcttttgggtccaatcaaaatgaaaaagaccccattttgatccccacaaagtgagaaaagcatgttctta-ccctctagatatgatgtacga 103  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||    
T  45168711 agaaaggctgttttgggtccaatcaaaatgaaaaagaccccattttgatccccacaaaatgagaaaagcatgttcttacccctctagatatgatgtaaga 45168612  T
Q  104 ggg 106  Q
    |||    
T  45168611 ggg 45168609  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 45168530 - 45168437
Alignment:
Q  185 cagtccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||| ||||||||||||||||||||||||    
T  45168530 cagtccacgagtttgttatttctttcactatataagcagaagttatgcagactaagaggcatatttttttattcaataaaattattcgagattt 45168437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 39913461 - 39913377
Alignment:
Q  190 cacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    |||| ||||||||||||||| | ||| ||| ||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  39913461 cacgggtttgttatttcttttagtatttaaacagaacttatgcagcctaagaggcaca-tttttgattcaataaaaatattcgaga 39913377  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 43304191 - 43304134
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacac 246  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43304191 ccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagagacac 43304134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 43306898 - 43306842
Alignment:
Q  196 tttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  43306898 tttgttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt 43306842  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 3069107 - 3069045
Alignment:
Q  190 cacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||  |||||||||    
T  3069107 cacgagtttgttatttctttcactatataagcataacttatgtagcctaagatgcacactttt 3069045  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 41218665 - 41218744
Alignment:
Q  194 agtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    |||||||||||||||| | ||| ||||||||| ||||| ||||||||||||||||||||  ||||||||| | |||||||||    
T  41218665 agtttgttatttcttttagtatttaagcagaacttatggagcctaagagacacactttt--attcaataataatattcgaga 41218744  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 3063970 - 3063907
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||| |||||||||||||||||||||||||||| || ||||| ||||||||||  ||||||||    
T  3063970 ccacgggtttgttatttctttcactatataagcataacttatgtagcctaagaggtacactttt 3063907  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 53012882 - 53012945
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||| |||||||||||||||||||||||||||| || | ||| |||||||||| |||||||||    
T  53012882 ccacgggtttgttatttctttcactatataagcataactaatgtagcctaagaggcacactttt 53012945  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 25857653 - 25857720
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataa 263  Q
    ||||||||||||||| | ||| |||||| || ||||| ||||||||||||||||||||| |||||||||    
T  25857653 gtttgttatttcttttagtatttaagcataacttatgtagcctaagagacacacttttt-attcaataa 25857720  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 5128814 - 5128853
Alignment:
Q  239 agagacacactttttgattcaataaaattattcgagattt 278  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  5128814 agaggcacactttttgattcaataaaattattcgagattt 5128853  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 19795115 - 19795197
Alignment:
Q  195 gtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||  |||| ||| |||||  |||||||||||||||||||   ||||| ||||||||||||||||| ||||||    
T  19795115 gtttgttatttcttttgctatttaaacagaacattatgcagcctaagagacaa--ttttttattcaataaaattattccagattt 19795197  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 19999317 - 19999262
Alignment:
Q  191 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacac 246  Q
    ||||||||||||||||||| | ||| ||| ||||| ||||||||||||| ||||||    
T  19999317 acgagtttgttatttcttttagtatttaaacagaacttatgcagcctaaaagacac 19999262  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 22922084 - 22921995
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22922084 ccacgggtttgttatttctttcactatatatgcagaacttatgcagcctaagagacacaccttttgattcaataaaattattcgagattt 22921995  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 42890253 - 42890342
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  42890253 ccacgggtttgttatttctttcactacataagcaaaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattt 42890342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 22926880 - 22926793
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||| ||||||||||| ||||||||||||    
T  22926880 ccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagagacaca--atttaattcaataaaaatattcgagattt 22926793  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 42891878 - 42891809
Alignment:
Q  209 tcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  42891878 tcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattatttgagattt 42891809  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 6845195 - 6845280
Alignment:
Q  191 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||||||||||| ||| | ||||||||||||    
T  6845195 acgagtttgttatttctttcactatataagcagaacttatgtatcctaagag--acactttttgattcattaataatattcgagattt 6845280  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 22512275 - 22512191
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacac-tttttgattcaataaaattattcgagattt 278  Q
    |||| |||||||||||||||||||||||| | ||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  22512275 gtttattatttctttcactatataagcagcacttatgtaacctaagagtcacactttttttattcaataaaattattcgagattt 22512191  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 37189725 - 37189811
Alignment:
Q  192 cgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||||| |||||||| |||||  |||| |||| |||||  ||||||||| ||||| ||| | ||||||||||||    
T  37189725 cgagtttgttatttctttcgctatataaacagaacatatgtagcccaagaggtacacttttttattcattaataatattcgagattt 37189811  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 23573445 - 23573502
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||| |||||||||    
T  23573445 gtttgttatttctttcgctatataagcggaacttatgtagcctaagaggcacactttt 23573502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 18180910 - 18180828
Alignment:
Q  195 gtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||   ||| ||| |||||  ||||| |||||||||| |||  ||||||||||||||||||||||||||||||    
T  18180910 gtttgttatttcttttgttatttaaacagaacattatgtagcctaagaggcac--tttttgattcaataaaattattcgagattt 18180828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 23570449 - 23570503
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||||||||||||||||||||||| ||| ||||   ||||||||| |||||||||    
T  23570449 gtttgttatttctttcactatataagcggaacttat---gcctaagaggcacactttt 23570503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 50857678 - 50857589
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  50857678 ccacgggtttgttattactttcactatataagcagaacttatgcagcctaagaggcacactttttgatacaataaaattattcgagattt 50857589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 8931080 - 8931164
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||| | ||| ||| | ||||||||||||    
T  8931080 ccacgagtttgttatttctttcactatataagcagaa-ttatgcagcc---gagacacactttttta-tcattaataatattcgagattt 8931164  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 13441826 - 13441769
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||||||||||||||||||||||| ||| ||||  |||||||||| |||||||||    
T  13441826 gtttgttatttctttcactatataagctgaacttatatagcctaagaggcacactttt 13441769  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 13444203 - 13444158
Alignment:
Q  207 tttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||||||||||||||| ||||| |||||||||| |||| ||||    
T  13444203 tttcactatataagcagaacttatgtagcctaagaggcacattttt 13444158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 4303305 - 4303394
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  4303305 ccacgggtttgttatttctttcactatataaacaggacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattt 4303394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 13882918 - 13882831
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||  |||||||||||||||||||||||||| |||||||    
T  13882918 ccacgggtttgttatttctttcactatataagcagaacttatgtatcctaagag--acactttttgattcaataaaattatttgagattt 13882831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 4300412 - 4300501
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||  |||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  4300412 ccacgggtttgttatttctttcggtatataaggagaacttatgtagcctaagagacacactttttgattcaatcaaattatttgagattt 4300501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 13886420 - 13886333
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||| | ||||||||  |||||||||||||||||||||| |||||||||||    
T  13886420 ccacgggtttgttatttctttcactatataagctgaacttatgtatcctaagag--acactttttgattcaataaaatcattcgagattt 13886333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 1220666 - 1220613
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagag 242  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  1220666 ccacgagtttgttatttctttcactatataaacagaacttatgtagcctaagag 1220613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 5678438 - 5678360
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    |||||||| |||||| | ||| ||| ||||| ||||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  5678438 gtttgttacttcttttagtatttaaacagaacttatgcagcttaagagacac--tttttcattcaataaaattattcgaga 5678360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 5703490 - 5703412
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    |||||||| |||||| | ||| ||| ||||| ||||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  5703490 gtttgttacttcttttagtatttaaacagaacttatgcagcttaagagacac--tttttcattcaataaaattattcgaga 5703412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 859389 - 859326
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||||||||||||||||||||||||||| || || ||||| ||||||| |  |||||||||    
T  859389 ccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacactttt 859326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 1217393 - 1217330
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||||||||||||||||||||||||||| || || ||||| ||||||| |  |||||||||    
T  1217393 ccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacactttt 1217330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 40779020 - 40778931
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| |||| |||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  40779020 ccacgtgtttattatttctttcactatataagcagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagattt 40778931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 21849204 - 21849116
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| |||||||||||||||||||||||||||  || ||||| ||||||| ||  ||||||||||||||||||||||||||||||||||    
T  21849204 ccacgggtttgttatttctttcactatataagcgaaacttatgtagcctaa-aggtacactttttgattcaataaaattattcgagattt 21849116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 19677353 - 19677279
Alignment:
Q  199 gttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    ||||||||||| | ||| ||| ||||| ||||||| |||||||| |||||||| | ||||||||||| |||||||||    
T  19677353 gttatttcttttagtatttaaacagaacttatgcatcctaagaggcacactttgt-attcaataaaa-tattcgaga 19677279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 27952532 - 27952463
Alignment:
Q  209 tcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  27952532 tcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattt 27952463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 27956368 - 27956299
Alignment:
Q  209 tcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  27956368 tcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattt 27956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 2155823 - 2155886
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2155823 ccacgtgtttgttatttctttcactatataagcagaacttatgcagcctaagagacacactttt 2155886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 33655482 - 33655571
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| |||||||||||||||||||||||||| ||||   ||  |||||||||| |||||||||| ||||||||||||||||||||||||    
T  33655482 ccacgggtttgttatttctttcactatataaggagaaccaatttagcctaagaggcacactttttcattcaataaaattattcgagattt 33655571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 2165779 - 2165842
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  2165779 ccacgagtttgttatttctttcactatataaggagaacttatgcagcctaagagacacattttt 2165842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 15129274 - 15129337
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  15129274 ccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt 15129337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 22264292 - 22264379
Alignment:
Q  190 cacgagtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||| |||||||||||||||| |||| |||||| ||  |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  22264292 cacgggtttgttatttctttcgctatttaagcataacattatgcagcctaagaggcac--tttttgattcaataaaattattcgagattt 22264379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 31633960 - 31634048
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| ||||| || ||||||| ||||| ||| | |||| |||||||    
T  31633960 ccacgagtttgttatttctttcactatataagtagaacttatgcagccgaagaggca-acttttttattcattaataatatttgagattt 31634048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 22011288 - 22011343
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagac 244  Q
    ||||| || ||||||||||||||||||||||||| || ||||| ||||||||||||    
T  22011288 ccacgggtctgttatttctttcactatataagcaaaacttatgtagcctaagagac 22011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 8781407 - 8781458
Alignment:
Q  226 gttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||| |||  ||||| ||||||||||||||||||||||||    
T  8781407 gttatgcagcctaagaggcact-tttttcattcaataaaattattcgagattt 8781458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 31636197 - 31636281
Alignment:
Q  195 gtttgttatttctttcac--tatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||||  |||||||| |||| ||||| |||| |||||||| ||||||| ||||| ||| | ||||| ||||||    
T  31636197 gtttgttatttctttcactatatataagtagaacttatgtagccgaagagaca-acttttttattcattaataatattcaagattt 31636281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 18725820 - 18725747
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattatt 270  Q
    ||||||||||||||| | ||| ||| || || |||||| | |||||||||||  ||||| ||||||||||||||||    
T  18725820 gtttgttatttcttttagtatttaaacaaaacttatgcggtctaagagacac--tttttcattcaataaaattatt 18725747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 30052064 - 30052147
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| ||||| ||| | ||||||||||||    
T  30052064 gtttgttatttctttcactatataagcaaaacttatgcagcttaagagacacacttttttattcattaataatattcgagattt 30052147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 3535891 - 3535978
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||| ||| | ||||||||||||    
T  3535891 ccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagaggcacactttt--attcattaataatattcgagattt 3535978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 3542102 - 3542189
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||| ||| | ||||||||||||    
T  3542102 ccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagaggcacactttt--attcattaataatattcgagattt 3542189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 30049777 - 30049860
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||| ||| | ||||||||||||    
T  30049777 gtttgttatttctttcactatataagcaaaacttattcagcttaagagacacacttttttattcattaataatattcgagattt 30049860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 29341040 - 29340955
Alignment:
Q  189 ccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    ||||| ||||||||||||  ||||||||||||||||| ||||||||||||||| | ||||||||| ||||| ||| | |||||||||    
T  29341040 ccacgggtttgttatttcaatcactatataagcagaacttatgcagcctaagacaaacacttttt-attcattaataatattcgaga 29340955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 11190357 - 11190443
Alignment:
Q  191 acgagtttgttatttctttcactatataagcagaag-ttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||  |||| ||| |||||  ||||| ||| ||| ||||||  ||||||||||||||||||||||||||||||    
T  11190357 acgagtttgttatttcttttgctatttaaacagaacattatgtagcttaaaagacac--tttttgattcaataaaattattcgagattt 11190443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 2939918 - 2939848
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaat 266  Q
    |||| |||||||||| | ||| ||||||||| ||||||||||||||||  ||||||||| ||||||||||||    
T  2939918 gtttattatttcttttagtatttaagcagaacttatgcagcctaagag-gacactttttcattcaataaaat 2939848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 26571045 - 26571094
Alignment:
Q  227 ttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||| |||  || || ||||||||||||||||||||||||    
T  26571045 ttatgcagcctaagagccac--ttattcattcaataaaattattcgagattt 26571094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 6659556 - 6659475
Alignment:
Q  196 tttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||| ||||||||||||    
T  6659556 tttgttatttctttcactatataagcagaacttatgtagcctaagaggca-actttttgattcactaaaactattcgagattt 6659475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 24667541 - 24667606
Alignment:
Q  187 gtccacgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||    
T  24667541 gtccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 24667606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 22691178 - 22691230
Alignment:
Q  200 ttatttctttcactatataagcagaagttatgcagcctaagagacacactttt 252  Q
    |||||||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  22691178 ttatttctttcactatataagcagaacttatgtagcctaagaggcacactttt 22691230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 13085286 - 13085237
Alignment:
Q  227 ttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  13085286 ttatgcagcctaagagacac--ttttttattcaataaaattattcgagattt 13085237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 2053238 - 2053156
Alignment:
Q  191 acgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    |||||||||||||||| || | ||| ||| || || ||||||||||||||||  | |||| || |||||||||||||||||||||    
T  2053238 acgagtttgttatttcatttagtatttaaacataacttatgcagcctaagag--agacttattcattcaataaaattattcgaga 2053156  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 4053007 - 4053087
Alignment:
Q  192 cgagtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgaga 275  Q
    |||||||||||||||||| | ||| ||| || || ||||||| |||||||||| |   |||| ||||||||||| |||||||||    
T  4053007 cgagtttgttatttcttttagtatttaaacaaaacttatgcaacctaagagactc---ttttcattcaataaaaatattcgaga 4053087  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 13086312 - 13086280
Alignment:
Q  246 cactttttgattcaataaaattattcgagattt 278  Q
    |||||||| ||||||||||||||||||||||||    
T  13086312 cactttttaattcaataaaattattcgagattt 13086280  T

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Target: scaffold0110 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 46932 - 46849
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||| ||| | ||||||||||||    
T  46932 gtttgttatttctttcactatataagcaaaacttatccagcttaagagacacacttttttattcattaataatattcgagattt 46849  T

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Target: scaffold0110; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 45490 - 45407
Alignment:
Q  195 gtttgttatttctttcactatataagcagaagttatgcagcctaagagacacactttttgattcaataaaattattcgagattt 278  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||| || || |||| ||||| ||| | ||||||||||||    
T  45490 gtttattatttctttcactatataaggagaacttatgcagcctaagaggcaaacatttttattcattaataatattcgagattt 45407  T

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