View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_16 (Length: 270)
Name: NF15733_low_16
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 11615952 - 11616114
Alignment:
| Q |
23 |
ggtccttgttttcattctttggtgtaagccaaaagttaacacgatgcatttgatttttcttgaaatctatcacctgatacattnnnnnnnnnnnnnntcg |
122 |
Q |
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| T |
11615952 |
ggtccttgttttgattctttggtgtaagccaaaagttagcacgatgcatttgattttccttaaaatctaacacctgatacattaaaaaaaaaaa---tca |
11616048 |
T |
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| Q |
123 |
aagaaatatacttaaatcaaaccctaatattgttaatcaataaaccttatgtaaattcaacccacg |
188 |
Q |
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| T |
11616049 |
aagaaatatacttaaatcaaaccctaatattgttaatcaataaaccttatgtaaattcaacccacg |
11616114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 11616115 - 11616160
Alignment:
| Q |
216 |
ttaatccactcaagatctatgcatatgttcatcaaataagaattat |
261 |
Q |
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| T |
11616115 |
ttaatccactcaagatctatgcatattttcatcaaataagaattat |
11616160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 11605289 - 11605220
Alignment:
| Q |
36 |
attctttggtgtaagccaaaagttaacacgatgcatttgatttttcttgaaatctatcacctgatacatt |
105 |
Q |
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| T |
11605289 |
attcttgggtgtaagccaaaattttgtacgatgcatttgattttcgtagaaatctagcacctgatacatt |
11605220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 8671757 - 8671695
Alignment:
| Q |
43 |
ggtgtaagccaaaagttaacacgatgcatttgatttttcttgaaatctatcacctgatacatt |
105 |
Q |
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| T |
8671757 |
ggtgcaagccaatatttagcacgatgcatttgattttcctagaaatctagcacctgatacatt |
8671695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 8715343 - 8715396
Alignment:
| Q |
52 |
caaaagttaacacgatgcatttgatttttcttgaaatctatcacctgatacatt |
105 |
Q |
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| T |
8715343 |
caaaatttaacacgatgcatttgattttcctagaaatctagcacttgatacatt |
8715396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 35078918 - 35078875
Alignment:
| Q |
62 |
cacgatgcatttgatttttcttgaaatctatcacctgatacatt |
105 |
Q |
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| T |
35078918 |
cacgatgcatttgattttcctagaaatctagcacctgatacatt |
35078875 |
T |
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