View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_17 (Length: 249)
Name: NF15733_low_17
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 5036753 - 5036973
Alignment:
| Q |
11 |
ataatactttattgatgatcttcatattattttgataataaataaaattctagtacttattttttgaacacaacacttgtgttcataaacctggtaactt |
110 |
Q |
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| T |
5036753 |
ataatactttattgatgatcttcatattattttgataataaataaaattctagtacttattttttgaacacaacacttgtgttcataaacctgataactt |
5036852 |
T |
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| Q |
111 |
tttcccaaagtcatttcaaatacttttcttgatctcagttatagaccttgctggttagtgacagctgattcttcaaattgatgatgaccgttcgatgatt |
210 |
Q |
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| T |
5036853 |
tttcccaaagtcatttcaaatacttttcttgatctcagttatagaccttgctggttagtgacagctgattcttaaaattgatgatgaccgttcgatgatt |
5036952 |
T |
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| Q |
211 |
tggaaatggacaaagcttttt |
231 |
Q |
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| T |
5036953 |
tggaaatggacaaagcttttt |
5036973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 5031628 - 5031847
Alignment:
| Q |
27 |
gatcttcatattattttgataataaataaaattctagtacttattttttgaaca---------------caacacttgtgttcataaacctggtaacttt |
111 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||| ||||||||||| ||||||| |
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| T |
5031628 |
gatcttcatattattttgataataaatacaattctagtacttattttcttaacacaacaataaaaaacacaacacttgtgctcataaacctgataacttt |
5031727 |
T |
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| Q |
112 |
ttcccaaagtcatttcaaatacttttcttgatctcagttatagaccttgctggttagtgacagctgattcttcaaattgatgatgaccgttcgatgattt |
211 |
Q |
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| T |
5031728 |
ttcccaaagtcatttcaaatacttttcttgatctcagatatagaccttgctggtttgtgacagctgattcttcaaattgatgatgaccattcgatgattt |
5031827 |
T |
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| Q |
212 |
ggaaatggacaaagcttttt |
231 |
Q |
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| T |
5031828 |
ggaaatgcacaaagcttttt |
5031847 |
T |
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