View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_18 (Length: 236)
Name: NF15733_low_18
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 18960548 - 18960329
Alignment:
| Q |
3 |
gcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttatgnnnnnnnnnngacaaaatgacacttgatttattgtg |
102 |
Q |
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| T |
18960548 |
gcatgtattcctcttgacacttgacttgttgtatgtattaattagtcatgacacttgatttat-ttatttttttgacaaaatgacacttgatttattgtg |
18960450 |
T |
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| Q |
103 |
agtgta---tttggcttgatgcatgtattaatgttagcccgtgctaacacttcacacttattttttaatttatttagttgaagagaagttcattcaattt |
199 |
Q |
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| T |
18960449 |
aatgtaacatttgacttgctgcatgtattaatgttagcccgtgctaacacttgacacttgttttttaatttatttaatcgaagagaagttcattcaattt |
18960350 |
T |
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| Q |
200 |
gaagtggaagcaattgcattc |
220 |
Q |
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||| |||||||||||| |||| |
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| T |
18960349 |
gaactggaagcaattgaattc |
18960329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 12513065 - 12513128
Alignment:
| Q |
2 |
tgcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat |
65 |
Q |
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| T |
12513065 |
tgcatgtattcctcttgacacttggattgttgcatgtattcatgagtcatgacacttggtttat |
12513128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 10982334 - 10982272
Alignment:
| Q |
3 |
gcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat |
65 |
Q |
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| T |
10982334 |
gcatgtattccttttgacatttggcttgttgcatgtattcatgagtcatgacacttggtttat |
10982272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3343687 - 3343751
Alignment:
| Q |
1 |
ttgcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat |
65 |
Q |
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||||||||||||||||||| | || |||| ||| ||||||| ||||||||||||| ||| ||||| |
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| T |
3343687 |
ttgcatgtattcctcttgaaacttggcttgttgcatgtattcattagtcatgacatttggtttat |
3343751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 3343865 - 3343931
Alignment:
| Q |
2 |
tgcatgtattcctcttgacatttagcttattgtatgtat---taattagtcatgacacttgatttat |
65 |
Q |
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||||||||||||||||||||||| |||| ||| |||||| |||| |||||| ||||||| ||||| |
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| T |
3343865 |
tgcatgtattcctcttgacatttggcttgttgcatgtattcctaatgagtcatcacacttggtttat |
3343931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 3547028 - 3547091
Alignment:
| Q |
2 |
tgcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat |
65 |
Q |
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||||||||||| |||||||| || |||| ||| ||||||| | |||||||||||||||||||| |
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| T |
3547028 |
tgcatgtattcatcttgacacttggcttgttgcatgtattcgtgagtcatgacacttgatttat |
3547091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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