View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_2 (Length: 491)
Name: NF15733_low_2
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 43131129 - 43131570
Alignment:
| Q |
11 |
caaaggtgactcatacagcaaggtttgtgtgtggaaatttaaaagaaaaacagaatgatgagatttgaataaatttttgaaccttatatatcttaatata |
110 |
Q |
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| T |
43131129 |
caaaggtgactcatacaacaaggtttgtgtgtggaaatttaaaagaaaaacagaatgatgagatttgaataaatttttgacccatatatatcttaatata |
43131228 |
T |
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| Q |
111 |
attttgtatagtaaatccatgacatcaaagattcctgagctgcaatcaaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttca |
210 |
Q |
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| T |
43131229 |
attttgtatagtaaatccatgacatcaaagattcctgagctgcaatcaaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttca |
43131328 |
T |
|
| Q |
211 |
agctgttgatggagaggaacaaacactatgtccaagaaccacctactattgaaaagtgccaatcactagccaaacaattgttctatactcgacttgccag |
310 |
Q |
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| T |
43131329 |
agctgttgatggagaggaacaaacaccatgtccaagaaccacctactattgaaaagtgtcaatcactggccaaacaattgttctatactcgacttgccag |
43131428 |
T |
|
| Q |
311 |
gtttgttgcatatatatatgaatgaattacgtacaactaaaatgagacacttataatgagacggaggaaatatttattgaacttgttannnnnnnnnnnn |
410 |
Q |
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| T |
43131429 |
gtttgttgc--atatatatgaatgaattacgtacaactaa--------------aatgagacggaggaaatatatattgaacttgttattttgtttta-- |
43131510 |
T |
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| Q |
411 |
nnnngcagtattcctcatcgttacgattcattctggaaggaattggactctgctaagaacataat |
475 |
Q |
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| T |
43131511 |
-----cagtattcctcatcgttacgattcattctggaaggaattggactctgctaagaacataat |
43131570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 43130447 - 43130508
Alignment:
| Q |
112 |
ttttgtatagtaaatccatgacatcaaagattcctgagctgcaatcaaaggcgactcaagca |
173 |
Q |
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| T |
43130447 |
ttttgtatagtgaactaatgacttcaaagattcctcagctgcaattaaaggtgactcaagca |
43130508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 33931946 - 33931910
Alignment:
| Q |
341 |
gtacaactaaaatgagacacttataatgagacggagg |
377 |
Q |
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| T |
33931946 |
gtacaactcaaatgagacacttataatgaaacggagg |
33931910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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