View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15733_low_20 (Length: 210)
Name: NF15733_low_20
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 15051209 - 15051386
Alignment:
| Q |
20 |
tttatctcctaatccctattatttctctcgttaattattgtcataattcccttcattataaacacctgaaatcactcctttggaaaata----ttcttaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||| | ||||| | |
|
|
| T |
15051209 |
tttatctcctaatccctattatttctctcgttaattattgttataatttccttcattataaacacctgaaaccactcctttcaaaaagattctttcttta |
15051308 |
T |
|
| Q |
116 |
ttccttatttatttattatttctggttagtaa-ttctaggatattttggtaataaattggattaatttctttcctatt |
192 |
Q |
| |
|
||||||||||||||||| ||| | ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
15051309 |
ttccttatttatttatttattccgtttagtaatttcaaggatatttgggtaataaattggattaatttatttcctatt |
15051386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 15103404 - 15103224
Alignment:
| Q |
20 |
tttatctcctaatccctattatttctctcgttaattattgtcataattcccttcattataaacacctgaaatcactcctttggaaaata----ttcttaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||| | ||||| | |
|
|
| T |
15103404 |
tttatctcctaatccctattatttctctcgttaattattgttataatttccttcattataaacacctgaaaccactcctttcaaaaagattctttcttta |
15103305 |
T |
|
| Q |
116 |
ttccttatttattta-ttat---ttctggttagtaattctaggatattttggtaataaattggattaatttctttcctatt |
192 |
Q |
| |
|
||||||||||||||| |||| ||| | |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
15103304 |
ttccttatttatttatttatttattccgtttagtaattcaaggatatttgggtaataaattggattaatttatttcctatt |
15103224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 15053370 - 15053493
Alignment:
| Q |
74 |
attataaacacctgaaatcactcctttggaaaatattcttaattccttat----ttatttattatttctggttagtaattctaggatattttggtaataa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
15053370 |
attataaacacctgaaatcactcctttgaaaaatattctttattccttatttatttatttatttattctggttagtaattctaagatattttggtaataa |
15053469 |
T |
|
| Q |
170 |
attggattaatttctttcctattc |
193 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15053470 |
attggattaatttctttcctattc |
15053493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 15102526 - 15102416
Alignment:
| Q |
79 |
aaacacctgaaatcactcctttggaaaatattcttaattccttatttatttattatttctggttagtaattctaggatattttggtaataaattggatta |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15102526 |
aaacacctgaaatcactcctttggaaaatattctttattccttatttatttatt----ccgtttagtaattctaggatattttggtaataaattggatta |
15102431 |
T |
|
| Q |
179 |
atttctttcctattc |
193 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15102430 |
atttctttcctattc |
15102416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 15053335 - 15053374
Alignment:
| Q |
18 |
tgtttatctcctaatccctattatttctctcgttaattat |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15053335 |
tgtttatctcctaatccctattatttctctcgttaattat |
15053374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University