View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_5 (Length: 427)
Name: NF15733_low_5
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 75 - 420
Target Start/End: Complemental strand, 2013988 - 2013645
Alignment:
| Q |
75 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
174 |
Q |
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| T |
2013988 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
2013889 |
T |
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| Q |
175 |
tctgatcatttatttttcttcaaattattatcagtgtataagtatcagtgtcgtgtcaggtgtctgtgtaggtttttcataggtgtatgtttggaggaat |
274 |
Q |
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| T |
2013888 |
tctgatcattttttttt--tcaaattattatctgtgtataagtatcagtgtcgtgtctcgtgtctgtgtaggtttttcataggtgtatgtttggaggaat |
2013791 |
T |
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| Q |
275 |
tagacatggaaatgaaaattagaagaacagagtaaaaaatgaatcatcagaaacaacaagaacaccaacttgcgttgcgttcaacagaaatgataatggg |
374 |
Q |
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| T |
2013790 |
tagacatggaaatgaaaattagaagaacaaagtaaaaaatgaatcatcagaaacaacaagaacaccaacctgcgttgcgttcaacagaaatgatagtggg |
2013691 |
T |
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| Q |
375 |
aagcgcgggaaggaaacgagatgcaaacaactctggatttcatctc |
420 |
Q |
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| T |
2013690 |
aagcgcgggaaggaaacgagatgcaaacaactctggatttcatctc |
2013645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 2014039 - 2014001
Alignment:
| Q |
15 |
aactccctcctactaaaacataaatcacagctctagaag |
53 |
Q |
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| T |
2014039 |
aactccctcctactaaaacataaatcatagctctagaag |
2014001 |
T |
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