View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_7 (Length: 382)
Name: NF15733_low_7
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 56069644 - 56069410
Alignment:
| Q |
140 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
239 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
56069545 |
T |
|
| Q |
240 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacac----tataatggaaatatgaaaccatggatcgagataagtattcaaaagt |
335 |
Q |
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| T |
56069544 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactatatataatggaaatatgaaaccatggctcgagataagtattcaaaagt |
56069445 |
T |
|
| Q |
336 |
ttcaaggttattggacgaagtacgttcattatgat |
370 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
56069444 |
ttcaaggttattggacgaagtacattcattatgat |
56069410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 56069810 - 56069678
Alignment:
| Q |
3 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069810 |
cacagaggtgtaccacaaatggcagaaactggtaagcacacttta----atttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
56069715 |
T |
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| Q |
103 |
tttctcgtttctttccaatttcatcgacgatgtttcc |
139 |
Q |
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| T |
56069714 |
tttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 140 - 369
Target Start/End: Original strand, 38398695 - 38398922
Alignment:
| Q |
140 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
239 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
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| Q |
240 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttca |
339 |
Q |
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||||| ||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| | ||||||||||| | |||||| | |
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| T |
38398795 |
aaccccaatgtcaaccaaaaagatattgaaagggctgctgtaat--tcactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaa |
38398892 |
T |
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| Q |
340 |
aggttattggacgaagtacgttcattatga |
369 |
Q |
| |
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|||||||||||||||||| ||| ||||||| |
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| T |
38398893 |
aggttattggacgaagtatgttgattatga |
38398922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 38398508 - 38398594
Alignment:
| Q |
3 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
94 |
Q |
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|||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||||||| | |||||||||||| |||||||||| |
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| T |
38398508 |
cacagaggtgtaccacaattggcagaagctggtaag-acacttta----atctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 357
Target Start/End: Original strand, 10171013 - 10171221
Alignment:
| Q |
147 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctacaaccctg |
246 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| | | ||||| || ||||||||||||||||| || |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgttgggtcttggctacaatccca |
10171112 |
T |
|
| Q |
247 |
atgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttat |
346 |
Q |
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| T |
10171113 |
acgtcaaccaaaaagatattgatcgggctgctgt--tatgcactacaatgggaacatgaagccatggttggagataagtattcccaagtttagaggttac |
10171210 |
T |
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| Q |
347 |
tggacgaagta |
357 |
Q |
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||||| ||||| |
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| T |
10171211 |
tggacaaagta |
10171221 |
T |
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