View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15733_low_8 (Length: 345)
Name: NF15733_low_8
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15733_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 43131275 - 43131570
Alignment:
| Q |
11 |
caaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttcaagctgttgatggagaggaacaaacactatgtccaagaaccacctac |
110 |
Q |
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| T |
43131275 |
caaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttcaagctgttgatggagaggaacaaacaccatgtccaagaaccacctac |
43131374 |
T |
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| Q |
111 |
tattgaaaagtgccaatcactagccaaacaattgttctatactcgacttgccaggtttgttgcatatatatatgaatgaattacgtacaactaaaatgag |
210 |
Q |
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| T |
43131375 |
tattgaaaagtgtcaatcactggccaaacaattgttctatactcgacttgccaggtttgttgc--atatatatgaatgaattacgtacaactaa------ |
43131466 |
T |
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| Q |
211 |
acacttataatgagacggaggaaatatttattgaacttgttannnnnnnnnnnnnnnngcagtattcctcatcgttacgattcattctggaaggaattgg |
310 |
Q |
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| T |
43131467 |
--------aatgagacggaggaaatatatattgaacttgttattttgtttta-------cagtattcctcatcgttacgattcattctggaaggaattgg |
43131551 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 33931946 - 33931910
Alignment:
| Q |
195 |
gtacaactaaaatgagacacttataatgagacggagg |
231 |
Q |
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| T |
33931946 |
gtacaactcaaatgagacacttataatgaaacggagg |
33931910 |
T |
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