View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15733_low_9 (Length: 323)

Name: NF15733_low_9
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15733_low_9
NF15733_low_9
[»] chr2 (17 HSPs)
chr2 (1-322)||(8403639-8403960)
chr2 (1-183)||(8429494-8429676)
chr2 (139-218)||(8368104-8368183)
chr2 (139-218)||(8401227-8401306)
chr2 (139-218)||(8422804-8422883)
chr2 (153-207)||(8411867-8411921)
chr2 (153-207)||(8433965-8434019)
chr2 (153-205)||(8376087-8376139)
chr2 (153-205)||(8431018-8431070)
chr2 (24-99)||(8376193-8376268)
chr2 (24-99)||(8395879-8395954)
chr2 (24-99)||(8405618-8405693)
chr2 (24-99)||(8430889-8430964)
chr2 (162-221)||(8459649-8459708)
chr2 (157-206)||(8416952-8417001)
chr2 (24-99)||(8416822-8416897)
chr2 (153-203)||(8405747-8405797)
[»] chr4 (2 HSPs)
chr4 (25-198)||(55335978-55336151)
chr4 (4-199)||(55330525-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (24-99)||(25-100)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 8403639 - 8403960
Alignment:
Q  1 gaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctctt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8403639 gaggcaagctctctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattcaaatctttctctt 8403738  T
Q  101 caatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagt 200  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403739 caataatttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagt 8403838  T
Q  201 attaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgatcctatagctgcaattcctgttaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8403839 attaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgaccctatagctgcaattcctgttaac 8403938  T
Q  301 aaaggtccaaaaattgctaaac 322  Q
    |||||||| |||||||||||||    
T  8403939 aaaggtcctaaaattgctaaac 8403960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 8429494 - 8429676
Alignment:
Q  1 gaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctctt 100  Q
    |||||||  |||||||||||||||||||||||||||||||  || ||||||||||| |||||||| || || ||||||||||||||||||||||| ||||    
T  8429494 gaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttcaaacacttccccgttttctcttttattcaaatctttatctt 8429593  T
Q  101 caatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgt 183  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  8429594 caatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctatacatctgaaacatcataccaacttgt 8429676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 8368104 - 8368183
Alignment:
Q  139 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 218  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8368104 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8368183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 8401306 - 8401227
Alignment:
Q  139 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 218  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8401306 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8401227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 8422883 - 8422804
Alignment:
Q  139 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 218  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8422883 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8422804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 8411867 - 8411921
Alignment:
Q  153 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 207  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8411921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 8433965 - 8434019
Alignment:
Q  153 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 207  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8434019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 8376139 - 8376087
Alignment:
Q  153 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 205  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8376087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 8431018 - 8431070
Alignment:
Q  153 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 205  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8431070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 8376268 - 8376193
Alignment:
Q  24 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 99  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8376268 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8376193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 8395954 - 8395879
Alignment:
Q  24 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 99  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8395954 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8395879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 8405618 - 8405693
Alignment:
Q  24 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 99  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8405618 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8405693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  24 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 99  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 8459708 - 8459649
Alignment:
Q  162 ctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaaagc 221  Q
    |||||| |||||||||||||| |||||||| || || || ||||||||||||||||||||    
T  8459708 ctcaaaaaccataccaacttgccctccatgttctaatgtgttaacaacagttgccaaagc 8459649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 8416952 - 8417001
Alignment:
Q  157 tacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaac 206  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaac 8417001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  24 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 99  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 8405747 - 8405797
Alignment:
Q  153 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtatt 203  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtatt 8405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 55335978 - 55336151
Alignment:
Q  25 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 124  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  125 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 198  Q
    | || | || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 55336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 55330525 - 55330720
Alignment:
Q  4 gcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaa 103  Q
    |||||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||||||||| |    
T  55330525 gcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctttctcttcca 55330624  T
Q  104 tagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaag 199  Q
      ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| |||||||    
T  55330625 atgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 55330720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 100 - 25
Alignment:
Q  24 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 99  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  100 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 25  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University