View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_high_11 (Length: 286)
Name: NF15734_high_11
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 124693 - 124949
Alignment:
| Q |
14 |
atcaaaaacatcaaactagaaaattacaggcatcttagaaggccatacatggaaattaagttgatttatgagcaagtatataactcaaaatctggtcatt |
113 |
Q |
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| T |
124693 |
atcaaaaacatcaaactagaaaattgcaggcatcttagaaggccatacatggaaattaagttgatttatgagcaagtatataactcaaaatctggtcatt |
124792 |
T |
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| Q |
114 |
gcatagtaacacattaagaatcagagatctttatgaccttagcaagacaattgtctattggcttagaatatgggaaactcgtaattggacattcgggatt |
213 |
Q |
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| T |
124793 |
gcatagtaacacattaagaatcagagatctttatgaccttagcaagacaattgtctattggcttagaatatgggaaactagtaattggacattcaggatt |
124892 |
T |
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| Q |
214 |
tattcgctccaacctacaaaatttaagnnnnnnnnttaatattgccattactatata |
270 |
Q |
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| T |
124893 |
tattcgctccaacctacaaaatttaagaaaaaaaattaatatttccattactatata |
124949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 135336 - 135449
Alignment:
| Q |
127 |
ttaagaatcagagatctttatgaccttagcaagacaattgtctattggcttagaatatgggaaactcgtaattggacattcgggatttattcgctccaac |
226 |
Q |
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| T |
135336 |
ttaagaattagagagctttattatcctagccaaacagttgtctattggtttaggttgtgggaaactagtaagcggacattccgaatttattcgctccaac |
135435 |
T |
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| Q |
227 |
ctacaaaatttaag |
240 |
Q |
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| T |
135436 |
ctacaaagtttaag |
135449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 3957071 - 3957184
Alignment:
| Q |
126 |
attaagaatcagagatctttatgaccttagcaagacaattgtctattggcttagaatatgggaaactcgtaattggacattcgggatttattcgctccaa |
225 |
Q |
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|||||| |||||||| |||| |||||||||||||||| |||||| |||||||| |||||| ||||| |||| ||||||||| || |||||||||||||| |
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| T |
3957071 |
attaagcatcagagagctttgtgaccttagcaagacagttgtctgttggcttaatatatggcaaactagtaagtggacattctgggtttattcgctccaa |
3957170 |
T |
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| Q |
226 |
cctacaaaatttaa |
239 |
Q |
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| T |
3957171 |
cctacaaaatttaa |
3957184 |
T |
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