View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_high_20 (Length: 207)
Name: NF15734_high_20
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 1946715 - 1946885
Alignment:
| Q |
20 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
119 |
Q |
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| T |
1946715 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
1946814 |
T |
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| Q |
120 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
190 |
Q |
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| T |
1946815 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
1946885 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 1928603 - 1928773
Alignment:
| Q |
20 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
119 |
Q |
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||||| |||| |||||||||||||||||||| | | || ||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1928603 |
aatgaaacatgggaacacaccataaatacaccggcatagacttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctata |
1928702 |
T |
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| Q |
120 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
190 |
Q |
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| T |
1928703 |
tactacacctttaggacttgatgttgttccagaagtgtaattcaaagaaattggatcccattcatcttttg |
1928773 |
T |
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