View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_high_3 (Length: 446)
Name: NF15734_high_3
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 11624702 - 11624267
Alignment:
| Q |
1 |
attatcgccacatcaccatctctgaggctcttgatgcagcaagaattatttcacctaatggaactcatcatcttcaaaatttgaaaaccaatggtagagt |
100 |
Q |
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| T |
11624702 |
attatcgccacatcaccatctctgaggctcttgatgcagcaagaattatttctcctaatggaactcatcatcttcaaaatttgaaaaccaatggtagagt |
11624603 |
T |
|
| Q |
101 |
tctcaactttgggttggatcatccacatatctatgattcaatgtcaaatgatctcaatcctgcagagaaaaaggttcttaacgacactcgaaataatggt |
200 |
Q |
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| T |
11624602 |
tctcaactttgggttggatcatccacatatctatgattcaatgtcaaatgatctcaatcctgcagagaaaaaggttcttaacgacactcgaaataatggt |
11624503 |
T |
|
| Q |
201 |
gatcgtttttcgagtgcgtcttctgttacagtttcaaaatccatggaggaaagtggtaaaaacatgacacaagaatcattgccacagcaaaataatggtt |
300 |
Q |
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| T |
11624502 |
gatcgtttttcaagtgcgtcttctgttacagtttcaaaatccatggaggaaagtggtaaaaacatgacacaagaatcattgccacagaaaaataatggtt |
11624403 |
T |
|
| Q |
301 |
tcattcctcaagttccatgtatgactagtgttccttggccttatacttggagttctggtgcaattccctcgccgcaaactttgtgtcctccgggatttcc |
400 |
Q |
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| T |
11624402 |
tcattccccaagttccatgtatgactagtgttccttggccttatacttggagttctggcgcaattccctcgccgcaaactttgtgtcctccgggatttcc |
11624303 |
T |
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| Q |
401 |
catgtcattttaccctgctcctttttggaatgttcc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11624302 |
catgtcattttaccctgctcctttttggaatgttcc |
11624267 |
T |
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