View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15734_low_1 (Length: 551)

Name: NF15734_low_1
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15734_low_1
NF15734_low_1
[»] chr3 (20 HSPs)
chr3 (53-319)||(11394042-11394308)
chr3 (53-319)||(46233725-46233993)
chr3 (13-67)||(11394327-11394381)
chr3 (13-67)||(46233652-46233706)
chr3 (326-377)||(36827327-36827378)
chr3 (326-376)||(55389342-55389392)
chr3 (317-376)||(53957864-53957923)
chr3 (326-380)||(48808572-48808626)
chr3 (319-376)||(36280190-36280247)
chr3 (327-376)||(53958973-53959022)
chr3 (326-375)||(55388259-55388308)
chr3 (326-360)||(3671251-3671285)
chr3 (326-380)||(36279152-36279206)
chr3 (321-375)||(45600833-45600887)
chr3 (319-377)||(47117944-47118002)
chr3 (330-380)||(52318186-52318236)
chr3 (326-367)||(33837363-33837404)
chr3 (319-375)||(47075245-47075301)
chr3 (319-375)||(48573178-48573234)
chr3 (319-375)||(48809529-48809585)
[»] chr2 (12 HSPs)
chr2 (53-319)||(9208594-9208860)
chr2 (13-67)||(9208879-9208933)
chr2 (326-375)||(43380787-43380836)
chr2 (328-376)||(31443098-31443146)
chr2 (330-380)||(14704209-14704259)
chr2 (326-376)||(32765137-32765187)
chr2 (319-376)||(24459327-24459384)
chr2 (326-367)||(33163320-33163361)
chr2 (326-372)||(31442551-31442597)
chr2 (326-380)||(39016252-39016306)
chr2 (332-376)||(2911360-2911404)
chr2 (329-373)||(21733627-21733671)
[»] chr1 (17 HSPs)
chr1 (53-319)||(32440413-32440679)
chr1 (405-532)||(6613245-6613372)
chr1 (13-67)||(32440340-32440394)
chr1 (327-376)||(39726540-39726589)
chr1 (330-374)||(34085746-34085790)
chr1 (317-376)||(6613840-6613899)
chr1 (329-380)||(9339849-9339900)
chr1 (329-376)||(26518312-26518359)
chr1 (326-380)||(7944355-7944409)
chr1 (321-378)||(16249858-16249915)
chr1 (319-376)||(52439654-52439711)
chr1 (337-380)||(32665638-32665681)
chr1 (326-377)||(34088321-34088372)
chr1 (330-375)||(6612634-6612679)
chr1 (319-376)||(51453592-51453649)
chr1 (326-374)||(25038101-25038149)
chr1 (326-374)||(25043313-25043361)
[»] chr7 (21 HSPs)
chr7 (15-319)||(16262422-16262712)
chr7 (326-380)||(45583794-45583848)
chr7 (326-376)||(7258475-7258525)
chr7 (326-380)||(7259554-7259608)
chr7 (330-380)||(30924878-30924928)
chr7 (326-376)||(44333337-44333387)
chr7 (330-380)||(44334319-44334369)
chr7 (319-376)||(24935566-24935622)
chr7 (459-508)||(42447675-42447724)
chr7 (321-377)||(6680385-6680441)
chr7 (319-375)||(12223553-12223609)
chr7 (326-376)||(12221501-12221551)
chr7 (326-380)||(35728955-35729009)
chr7 (326-376)||(45584370-45584419)
chr7 (330-375)||(10898947-10898992)
chr7 (327-380)||(39708330-39708383)
chr7 (319-376)||(43461590-43461647)
chr7 (326-375)||(48788546-48788595)
chr7 (326-374)||(7509327-7509375)
chr7 (315-375)||(34710257-34710317)
chr7 (319-375)||(46286716-46286772)
[»] chr4 (5 HSPs)
chr4 (318-534)||(26170855-26171071)
chr4 (326-380)||(42278249-42278303)
chr4 (326-376)||(20599759-20599809)
chr4 (330-380)||(47874767-47874817)
chr4 (326-375)||(47878358-47878407)
[»] chr8 (10 HSPs)
chr8 (319-376)||(28619405-28619462)
chr8 (319-375)||(41122616-41122672)
chr8 (326-380)||(1952839-1952893)
chr8 (329-376)||(10406409-10406456)
chr8 (316-375)||(35177584-35177643)
chr8 (326-376)||(32898318-32898368)
chr8 (327-376)||(35178678-35178727)
chr8 (330-367)||(41121329-41121366)
chr8 (337-377)||(5737875-5737915)
chr8 (333-377)||(39138516-39138560)
[»] chr5 (16 HSPs)
chr5 (319-376)||(14891020-14891077)
chr5 (326-376)||(2464869-2464919)
chr5 (319-377)||(9537235-9537293)
chr5 (326-376)||(40611460-40611510)
chr5 (77-146)||(21592442-21592511)
chr5 (77-146)||(21596559-21596628)
chr5 (328-376)||(544850-544898)
chr5 (316-376)||(32641600-32641660)
chr5 (330-377)||(4593973-4594020)
chr5 (329-376)||(25590633-25590680)
chr5 (329-376)||(34173483-34173530)
chr5 (326-376)||(578625-578675)
chr5 (326-376)||(2314387-2314437)
chr5 (326-372)||(8075710-8075756)
chr5 (325-367)||(19271660-19271702)
chr5 (316-376)||(40612532-40612592)
[»] scaffold0767 (1 HSPs)
scaffold0767 (326-376)||(6106-6156)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 53 - 319
Target Start/End: Complemental strand, 11394308 - 11394042
Alignment:
Q  53 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11394308 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacta 11394209  T
Q  153 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394208 tatgcattacattggtaaccaaaacattggaattaacaatgcaaacattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 11394109  T
Q  253 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394108 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 11394042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 53 - 319
Target Start/End: Original strand, 46233725 - 46233993
Alignment:
Q  53 gagctgaaaggcttgagtgaga--atttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttac 150  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233725 gagctgaaaggcttgagtgagagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttac 46233824  T
Q  151 gatatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaat 250  Q
     |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46233825 tatatgcattacattggtaaccaaagcattggaattaacaatgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaat 46233924  T
Q  251 ccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233925 ccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 46233993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 11394381 - 11394327
Alignment:
Q  13 agaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 67  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11394381 agaagaaagtgttgggttggaatcaaagacagcagcggcggagctgaaaggcttg 11394327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 46233652 - 46233706
Alignment:
Q  13 agaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 67  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46233652 agaagaaagtgttgggttggaatcaaagacagcagcggcggagctgaaaggcttg 46233706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 36827378 - 36827327
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  36827378 tccctgaatcgaaaatcaatatccccaaattgaatttcaaattcctaaatct 36827327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 55389392 - 55389342
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  55389392 tccctgaaccgaaaatcaatattcccaaattgaatatcaaattcctaaatc 55389342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 53957864 - 53957923
Alignment:
Q  317 ttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||| ||| |||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  53957864 ttactttagtccatgaaccaaaaatcaatatccccaaattgaatgtcaaatccctaaatc 53957923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 48808572 - 48808626
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| |||||||||||  ||||||||||| |||||| ||||||||||||    
T  48808572 tccctgaaccaaaaatcaatattcccaaattgaatatcaaatccctaaatcttaa 48808626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 36280247 - 36280190
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||| ||||| |||| |||||||||||  ||||||||||| |||||||||||||||    
T  36280247 actttagtccctaaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 36280190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 53959022 - 53958973
Alignment:
Q  327 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  53959022 ccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 53958973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 55388259 - 55388308
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||||||| |||||||||||| ||||||||||| |||||| |||||||    
T  55388259 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaat 55388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 3671251 - 3671285
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaat 360  Q
    ||||||||||||||||||||||| |||||||||||    
T  3671251 tccctgaaccgaaaatcaatatccccaaattgaat 3671285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 36279152 - 36279206
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| ||||  |||||| ||||||||||| |||||| ||||||||||||    
T  36279152 tccctgaaccaaaaaaaaatatccccaaattgaatatcaaatccctaaatcttaa 36279206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 45600887 - 45600833
Alignment:
Q  321 tttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||| ||| |||||| |||||||||||| |||| ||||||||||||| |||||||    
T  45600887 tttagtccttgaaccaaaaatcaatatccccaacttgaatttcaaatccctaaat 45600833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 47118002 - 47117944
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||||| |||||||||| |||||||||||| |||| |||||| || ||| |||||||||    
T  47118002 actttagtccctgaaccaaaaatcaatatccccaacttgaatctcgaatccctaaatct 47117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 52318236 - 52318186
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||| |||| ||||||| ||||||||||| |||||| ||||||||||||    
T  52318236 tgaaccaaaaaacaatatccccaaattgaatatcaaatccctaaatcttaa 52318186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 33837363 - 33837404
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaat 367  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  33837363 tccctgaaccaaaaatcaatatccccagattgaatttcaaat 33837404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 47075301 - 47075245
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||| |||||||||| |||||||||||| |||| |||||| | |||| |||||||    
T  47075301 actttagtccctgaaccaaaaatcaatatccccaacttgaatcttaaatccctaaat 47075245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 48573178 - 48573234
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||| |||| |||||| |||||||||||  | ||||||||| ||||||||||||||    
T  48573178 actttgatccatgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaat 48573234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 48809585 - 48809529
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||| |||| |||||| |||||||||||  | ||||||||| ||||||||||||||    
T  48809585 actttgatccatgaaccaaaaatcaatattcctaaattgaatatcaaattcctaaat 48809529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 53 - 319
Target Start/End: Complemental strand, 9208860 - 9208594
Alignment:
Q  53 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 152  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9208860 gagctaaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacta 9208761  T
Q  153 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 252  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9208760 tatgcattacattggtaaccaaagcattggaattaacaatgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaatcc 9208661  T
Q  253 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9208660 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 9208594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 9208933 - 9208879
Alignment:
Q  13 agaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 67  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  9208933 agaagaaagtgttgggttggaatcaaagacagcagcggcggagctaaaaggcttg 9208879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 43380787 - 43380836
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  43380787 tccctgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaat 43380836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 31443146 - 31443098
Alignment:
Q  328 cctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  31443146 cctgaaccgaaaatcaatatctccaaattaaatctcaaattcctaaatc 31443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 14704209 - 14704259
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  14704209 tgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 14704259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 32765137 - 32765187
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  32765137 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 32765187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 24459384 - 24459327
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||| ||||||||||| |||||||||||  ||||||||||| |||||||| ||||||    
T  24459384 actttgatccctgaaccaaaaatcaatattcccaaattgaatatcaaattcgtaaatc 24459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 33163361 - 33163320
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaat 367  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  33163361 tccctgaaccaaaaatcaatatccccaaattgaatttcaaat 33163320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 31442551 - 31442597
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattccta 372  Q
    ||||||||||||||||||||||| | ||||||||| |||||| ||||    
T  31442551 tccctgaaccgaaaatcaatatccctaaattgaatctcaaatcccta 31442597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 39016306 - 39016252
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| |||||||||||  ||||||||||| | |||| ||||||||||||    
T  39016306 tccctgaaccaaaaatcaatatgcccaaattgaatatgaaatccctaaatcttaa 39016252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 2911404 - 2911360
Alignment:
Q  332 aaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||| |||||||||||  ||||||||||| |||||||||||||||    
T  2911404 aaccaaaaatcaatatttccaaattgaatatcaaattcctaaatc 2911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 21733671 - 21733627
Alignment:
Q  329 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaa 373  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||    
T  21733671 ctgaaccgaaaatcaatattcccaaattgaatctcaaatccctaa 21733627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 53 - 319
Target Start/End: Original strand, 32440413 - 32440679
Alignment:
Q  53 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 152  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  32440413 gagctgaaaggcttgggtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggtcggagaggttgttgttttacta 32440512  T
Q  153 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 252  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32440513 tatgcattacattggtaaccaaagcattggaattaacaatgcaaacattgaaactatgcacacgtttcacaaagtttgatataaagggctggatcaatcc 32440612  T
Q  253 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32440613 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggagtgtta 32440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 405 - 532
Target Start/End: Complemental strand, 6613372 - 6613245
Alignment:
Q  405 accaaaatttccatgcagtacttgctggactacttcagtaggtattttctacgtagtggttgggcaatcaaggcttggaacaacatgttacttggtatgg 504  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  | |||||||||||||    
T  6613372 accaaaatttctatgtagtacttgctggactacttcggtaggtattttctatgtagtggttgggcaatcaaggcttggaacaatttattacttggtatgg 6613273  T
Q  505 ttttgtgcatgctttttatatggtcata 532  Q
    ||||||||||||||||||||||||||||    
T  6613272 ttttgtgcatgctttttatatggtcata 6613245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 32440340 - 32440394
Alignment:
Q  13 agaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 67  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  32440340 agaagaaagtgttgggttggaatcaaagacagcagcggcggagctaaaaggcttg 32440394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 39726589 - 39726540
Alignment:
Q  327 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  39726589 ccctgaaccaaaaatcaatatcaccaaattgaattccaaatccctaaatc 39726540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 34085746 - 34085790
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaa 374  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  34085746 tgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaa 34085790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 6613899 - 6613840
Alignment:
Q  317 ttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||  |||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  6613899 ttactttgttccctgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaatc 6613840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 9339849 - 9339900
Alignment:
Q  329 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  9339849 ctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 9339900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 26518312 - 26518359
Alignment:
Q  329 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  26518312 ctgaaccgaaaaccaatatctccaaattgaatctcaaattcctaaatc 26518359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 7944355 - 7944409
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||| ||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  7944355 tccctggaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 7944409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 16249858 - 16249915
Alignment:
Q  321 tttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatctt 378  Q
    |||| ||||||||||||||||||||||| | ||||||||| | |||| ||||||||||    
T  16249858 tttagtccctgaaccgaaaatcaatatccctaaattgaatcttaaatccctaaatctt 16249915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 52439654 - 52439711
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||| |||||| |||| ||||||||||||  |||||||||| |||||||||||||||    
T  52439654 actttgatccctaaaccaaaaatcaatatcctcaaattgaatatcaaattcctaaatc 52439711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 32665681 - 32665638
Alignment:
Q  337 aaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  32665681 aaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 32665638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 34088372 - 34088321
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||||||||  ||| |||||||| |||||||||||||||||| |||||||||    
T  34088372 tccctgaacaaaaattcaatatccccaaattgaatttcaaatccctaaatct 34088321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 6612634 - 6612679
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  6612634 tgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaat 6612679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 51453649 - 51453592
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||| ||||||||| |  |||||||||||  ||||||||||||||||| ||||||||    
T  51453649 actttgatccctgaatcataaatcaatatccgcaaattgaatttcaaatccctaaatc 51453592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 25038101 - 25038149
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaa 374  Q
    |||||||||| |||||||||||| | ||||||||| |||||| ||||||    
T  25038101 tccctgaaccaaaaatcaatatccctaaattgaatctcaaatccctaaa 25038149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 25043313 - 25043361
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaa 374  Q
    |||||||||| |||||||||||| | ||||||||| |||||| ||||||    
T  25043313 tccctgaaccaaaaatcaatatccctaaattgaatctcaaatccctaaa 25043361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 16262422 - 16262712
Alignment:
Q  15 aagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgac 114  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||  ||||              |||||||||||||||||||||||| ||    
T  16262422 aagaaagtgttgggttggaatcaaaatcagcagcggcggagctgaaaggcttggttgag--------------gaaaagagagggaggagagaaagcaac 16262507  T
Q  115 gatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacg 214  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||    
T  16262508 aatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaattaacaatgcaaacattgaaacaatgcacg 16262607  T
Q  215 cttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattggag 314  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16262608 cgtttcacaaagtttgatataaacggctggatcaatccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataattgaag 16262707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 45583794 - 45583848
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  45583794 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 45583848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 7258475 - 7258525
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  7258475 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 7258525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 7259608 - 7259554
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| ||||| |||||| ||||||||||| |||||| ||||||||||||    
T  7259608 tccctgaaccaaaaattaatatccccaaattgaatatcaaatccctaaatcttaa 7259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 30924928 - 30924878
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  30924928 tgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 30924878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 44333337 - 44333387
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  44333337 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 44333387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 44334369 - 44334319
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  44334369 tgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 44334319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 24935622 - 24935566
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||| ||||||||||  ||||||| |||||||||||||||| |||||||||||||||    
T  24935622 actttgatccctgaactaaaaatca-tatcaccaaattgaatctcaaattcctaaatc 24935566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 42447675 - 42447724
Alignment:
Q  459 agtggttgggcaatcaaggcttggaacaacatgttacttggtatggtttt 508  Q
    |||||||||||||||||||||||||| | | ||||||||||| |||||||    
T  42447675 agtggttgggcaatcaaggcttggaatagcctgttacttggtctggtttt 42447724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 6680441 - 6680385
Alignment:
Q  321 tttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||| ||||| |||| |||||||||||| ||||||||||||| |||||| |||||||    
T  6680441 tttagtccctaaaccaaaaatcaatatccccaaattgaattttaaattcataaatct 6680385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 12223609 - 12223553
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||| |||| |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  12223609 actttgatccttgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaat 12223553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 12221501 - 12221551
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| || ||||||||| ||||||||||| ||||||| |||||||    
T  12221501 tccctgaaccaaagatcaatatccccaaattgaatatcaaatttctaaatc 12221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 35729009 - 35728955
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| |||||||||||  ||||||||||| | |||| ||||||||||||    
T  35729009 tccctgaaccaaaaatcaatattcccaaattgaatattaaatccctaaatcttaa 35728955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 45584419 - 45584370
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  45584419 tccctgaacc-aaaatcaatattcccaaattgaatatcaaattcctaaatc 45584370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 10898992 - 10898947
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||    
T  10898992 tgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaat 10898947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 39708330 - 39708383
Alignment:
Q  327 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||| |||| |||||||||||   ||||||||||||||||| ||||||||||||    
T  39708330 ccctaaaccaaaaatcaatattctcaaattgaatttcaaatccctaaatcttaa 39708383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 43461647 - 43461590
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||| ||||||||||| |||||||||||| |  |||||||| |||||| ||||||||    
T  43461647 actttgatccctgaaccaaaaatcaatatccctcaattgaatctcaaatccctaaatc 43461590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 48788595 - 48788546
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||||||| |||||||||||   |||||||||| ||||||||||||||    
T  48788595 tccctgaaccaaaaatcaatattcacaaattgaatatcaaattcctaaat 48788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 7509375 - 7509327
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaa 374  Q
    ||||| |||| |||||||||||| ||||||||||| |||||| ||||||    
T  7509375 tccctaaaccaaaaatcaatatccccaaattgaatctcaaatccctaaa 7509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 34710317 - 34710257
Alignment:
Q  315 tgttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||||||| ||||||||| | |||||||| |||  |||||||||||| ||| ||||||||    
T  34710317 tgttactttgatccctgaatcaaaaatcaacatcctcaaattgaattttaaaatcctaaat 34710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 46286716 - 46286772
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||| |||| |||||| |||||||||||  ||||||| |||||||||| |||||||    
T  46286716 actttgatccttgaaccaaaaatcaatattcccaaattaaatttcaaatccctaaat 46286772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 26170855 - 26171071
Alignment:
Q  318 tactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaagaaaattatgattggtcgtaatcaaccaaaatttcca 417  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |    
T  26170855 tactttgatccctgaaccgaaaatcaatattcccaaattgaatttgaaatccctaaatcttaagaaaattatgattggtagtaatcaaccaaaatttcta 26170954  T
Q  418 tgcagtacttgctggactacttcagtaggtattttctacgtagtggttgggcaatcaaggcttggaacaacatgttacttggtatggttttgtgcatgct 517  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26170955 tgcagtacttgctggactacttcagtaggtattttctatgtagtggttgggcaatcaaggcttggaacaacatgttacttggtatggttttgtgcatgct 26171054  T
Q  518 ttttatatggtcataat 534  Q
    |||||||||||||||||    
T  26171055 ttttatatggtcataat 26171071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 42278249 - 42278303
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||    
T  42278249 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaa 42278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 20599809 - 20599759
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| ||||| |||||  ||||||||||| |||||||||||||||    
T  20599809 tccctgaaccaaaaattaatattcccaaattgaatctcaaattcctaaatc 20599759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 47874767 - 47874817
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||| |||||||||||| | ||||||||| |||||| ||||||||||||    
T  47874767 tgaaccaaaaatcaatatcccaaaattgaatatcaaatccctaaatcttaa 47874817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 47878407 - 47878358
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    |||||||||| |||||||||||  | ||||||||| ||||||||||||||    
T  47878407 tccctgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaat 47878358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 28619462 - 28619405
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||    
T  28619462 actttaatccatgaaccaaaaatcaatatccccaaattgaatttcaaatccctaaatc 28619405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 41122672 - 41122616
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  41122672 actttgatccctgaaccaaaaatcaatatctccaaattgaatctcaaattcctaaat 41122616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 1952893 - 1952839
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatcttaa 380  Q
    |||||||||| |||||||||||  ||||||||||| |||||| ||||||||||||    
T  1952893 tccctgaaccaaaaatcaatatgcccaaattgaatatcaaatccctaaatcttaa 1952839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 10406409 - 10406456
Alignment:
Q  329 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  10406409 ctgaaccaaaaatcaatatttccaaattgaatatcaaattcctaaatc 10406456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 35177584 - 35177643
Alignment:
Q  316 gttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaat 375  Q
    ||||||||  |||||||||| ||||||| |||| ||||||||||| |||||| |||||||    
T  35177584 gttactttggtccctgaaccaaaaatcagtatccccaaattgaatatcaaatccctaaat 35177643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 32898368 - 32898318
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| ||||||||||||  |||||||||| |||||| ||||||||    
T  32898368 tccctgaaccaaaaatcaatatcctcaaattgaatatcaaatccctaaatc 32898318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 35178727 - 35178678
Alignment:
Q  327 ccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||| |||||||||||  ||||||||||| |||||||| ||||||    
T  35178727 ccctgaaccaaaaatcaatattcccaaattgaatatcaaattcttaaatc 35178678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 41121329 - 41121366
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaat 367  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  41121329 tgaaccaaaaatcaatatccccaaattgaatttcaaat 41121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 5737915 - 5737875
Alignment:
Q  337 aaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||||||||||| ||||||||||| |||||| |||||||||    
T  5737915 aaaatcaatatccccaaattgaatctcaaatccctaaatct 5737875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 39138560 - 39138516
Alignment:
Q  333 accgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||||||||||||||| || |||||||| |||||| |||||||||    
T  39138560 accgaaaatcaatatccccgaattgaatctcaaatccctaaatct 39138516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 14891077 - 14891020
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||| |||||||| | |||||||||||  |||||||||||||||||||||||||||    
T  14891077 actttagtccctgaatcaaaaatcaatattcccaaattgaatttcaaattcctaaatc 14891020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 2464869 - 2464919
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||| ||||||||||| |||||| ||||||||    
T  2464869 tccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 2464919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 9537235 - 9537293
Alignment:
Q  319 actttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    ||||| ||||||||| | |||||||||||| ||||||||||| |||||| |||||||||    
T  9537235 actttgatccctgaatcaaaaatcaatatccccaaattgaatctcaaatccctaaatct 9537293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 40611460 - 40611510
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  40611460 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 40611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 21592511 - 21592442
Alignment:
Q  77 ttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt 146  Q
    |||||||| ||| | |||||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  21592511 ttgtggaaaagggagagagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt 21592442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 21596628 - 21596559
Alignment:
Q  77 ttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt 146  Q
    |||||||| ||| | |||||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  21596628 ttgtggaaaagggagagagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt 21596559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 544850 - 544898
Alignment:
Q  328 cctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  544850 cctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 544898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 32641660 - 32641600
Alignment:
Q  316 gttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||| |||||| |||| |||||||||||| ||||||||||| | |||| ||||||||    
T  32641660 gttactttgatccctcaaccaaaaatcaatatccccaaattgaatatgaaatccctaaatc 32641600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 4594020 - 4593973
Alignment:
Q  330 tgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatct 377  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  4594020 tgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatct 4593973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 25590633 - 25590680
Alignment:
Q  329 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  25590633 ctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 25590680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 34173483 - 34173530
Alignment:
Q  329 ctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||| |||||||||||| ||||||||||||||||||  |||||||    
T  34173483 ctgaaccaaaaatcaatatccccaaattgaatttcaaatcactaaatc 34173530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 578675 - 578625
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||||||||||||||||| | ||||||||| ||| ||| |||||||    
T  578675 tccctgaaccgaaaatcaatatccctaaattgaatctcagatttctaaatc 578625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 2314437 - 2314387
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| ||| | |||||| ||||||||||| |||||||||||||||    
T  2314437 tccctgaaccaaaatttaatatccccaaattgaatatcaaattcctaaatc 2314387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 8075756 - 8075710
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattccta 372  Q
    |||||||||| |||||||||||  ||||||||||| |||||||||||    
T  8075756 tccctgaaccaaaaatcaatattcccaaattgaatatcaaattccta 8075710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 367
Target Start/End: Complemental strand, 19271702 - 19271660
Alignment:
Q  325 atccctgaaccgaaaatcaatatcaccaaattgaatttcaaat 367  Q
    |||||| ||||||||||||||||| |||| |||||||||||||    
T  19271702 atccctaaaccgaaaatcaatatctccaagttgaatttcaaat 19271660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 40612592 - 40612532
Alignment:
Q  316 gttactttaatccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    ||||||||  |||||||||| |||||||||||  |||||||||||  ||||| ||||||||    
T  40612592 gttactttggtccctgaaccaaaaatcaatatgcccaaattgaataacaaatccctaaatc 40612532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 6156 - 6106
Alignment:
Q  326 tccctgaaccgaaaatcaatatcaccaaattgaatttcaaattcctaaatc 376  Q
    |||||||||| |||||||||||| ||||||  ||| |||||||||||||||    
T  6156 tccctgaaccaaaaatcaatatccccaaatataatctcaaattcctaaatc 6106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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