View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_low_10 (Length: 313)
Name: NF15734_low_10
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 46864590 - 46864347
Alignment:
| Q |
11 |
cacagataaagtaatcactaatcatacagacaagtggtaaattaattttaaaccagtgttaacgatgatggatggtggaaaaccaaatgtgcaatttaaa |
110 |
Q |
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| T |
46864590 |
cacagataaagtaatcactaatcatacagacaagtggtaaattaattttaaaccagtgttaacgatgatggatggtggaaaaccaaatgtgcaatttaaa |
46864491 |
T |
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| Q |
111 |
gccaccataaaacaccatggcgtcgccatccttcacaaattggccatggcacttgctacaaatctgccatttgacctctgatatttgacaacactgtttt |
210 |
Q |
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| T |
46864490 |
gccaccataaaacaccatggcgtcgccatccttcacaaattggccatggcgcttgctacaaatctgccatttgaacgctgatatttgacaacactgtttt |
46864391 |
T |
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| Q |
211 |
aaactgaagcagcatttattgtatgaacaaaataacaaaacaaa |
254 |
Q |
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| T |
46864390 |
aaactgaagcagcatttattgtatgaacaaaataacaaaacaaa |
46864347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 32255347 - 32255305
Alignment:
| Q |
119 |
aaaacaccatggcgtcgccatccttcacaaattggccatggca |
161 |
Q |
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| T |
32255347 |
aaaacaccatggcgtcgctatctatcacaaattggccatggca |
32255305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 40416724 - 40416761
Alignment:
| Q |
112 |
ccaccataaaacaccatggcgtcgccatccttcacaaa |
149 |
Q |
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| T |
40416724 |
ccaccataaaacgccatgtcgtcgccatccttcacaaa |
40416761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 30750090 - 30750042
Alignment:
| Q |
112 |
ccaccataaaacaccatggcgtcgccatccttcacaaattggccatggc |
160 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||||||| |||| |
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| T |
30750090 |
ccaccatagaacaccatggcaccgccatctttcacaaattggccgtggc |
30750042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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