View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_low_18 (Length: 234)
Name: NF15734_low_18
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_low_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 12799497 - 12799284
Alignment:
| Q |
21 |
tttatatgataattatgcactcaaactattaaaagctaaaatatttaacttttttaagcaataactcttaattaaaaatctttaaagaatgtcttgtaga |
120 |
Q |
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| T |
12799497 |
tttatatgaaaattatgcactcaaactattaaaagctaaaatatttaacttttttaagcaataactcttaattaaaaatctttaaaaaacgtcttggaga |
12799398 |
T |
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| Q |
121 |
caatcattaacaagaatctataaataattttgtcatccattaacatctatatttgaaaaatatatctagtgttgaaatcgacgtatatattcattcttaa |
220 |
Q |
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| T |
12799397 |
caatcattaacaaaaacctataaataattttgtcgtccattaacatctatatttgaaaaatatatctagtgttgaaatcgacatatatattcattcttaa |
12799298 |
T |
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| Q |
221 |
cgtattaaaattat |
234 |
Q |
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| T |
12799297 |
cgtgctaaaattat |
12799284 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 46798646 - 46798695
Alignment:
| Q |
86 |
tcttaattaaaaatctttaaagaatgtcttgtagacaatcattaacaaga |
135 |
Q |
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| T |
46798646 |
tcttaattagaaatctttaaagaatgtcatgaagacactcattagcaaga |
46798695 |
T |
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