View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_low_2 (Length: 499)
Name: NF15734_low_2
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_low_2 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 166 - 484
Target Start/End: Complemental strand, 3897297 - 3896979
Alignment:
| Q |
166 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
265 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897297 |
gttgtgattgtttgaaggatattgctgcggcagatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
3897198 |
T |
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| Q |
266 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897197 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
3897098 |
T |
|
| Q |
366 |
atgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaa |
465 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3897097 |
atgaagttatactaatagttgtgttcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaa |
3896998 |
T |
|
| Q |
466 |
taatattgcatgtaattat |
484 |
Q |
| |
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||||||||||||||||||| |
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| T |
3896997 |
taatattgcatgtaattat |
3896979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3898784 - 3898713
Alignment:
| Q |
1 |
ctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3898784 |
ctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
3898713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 46283646 - 46283795
Alignment:
| Q |
180 |
aaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttg |
279 |
Q |
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|||||||||||| | |||||||||| ||| |||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || | | || |
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| T |
46283646 |
aaggatattgctgctgcggatcttccatcaactcatcctataagattgggtttggctctcaatttctctgttttctattacgaaattctcaatcaatctg |
46283745 |
T |
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| Q |
280 |
acgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgttt |
329 |
Q |
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|| ||| | ||||||||| | ||||||||||||||||| ||||||||| |
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| T |
46283746 |
acaaagcttgtgacatggccaaacaggtttgtgttaatctgatcttgttt |
46283795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46283500 - 46283571
Alignment:
| Q |
1 |
ctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
72 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||| |||||||||| |
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| T |
46283500 |
ctgagtttaagattggtgatgagaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
46283571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 166 - 484
Target Start/End: Complemental strand, 4953 - 4633
Alignment:
| Q |
166 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
265 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953 |
gttgtgattgtttgaaggatattgctgctgcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
4854 |
T |
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| Q |
266 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4853 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
4754 |
T |
|
| Q |
366 |
atgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaa |
465 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4753 |
atgaagttatactaatagttgtgttcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaa |
4654 |
T |
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| Q |
466 |
taatatt--gcatgtaattat |
484 |
Q |
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||||||| |||||||||||| |
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| T |
4653 |
taatattaagcatgtaattat |
4633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5115 - 5044
Alignment:
| Q |
1 |
ctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5115 |
ctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
5044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 39356450 - 39356413
Alignment:
| Q |
225 |
ttgggtttggctttgaatttctcggttttctattatga |
262 |
Q |
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|||||| |||||||||||||||| |||||||||||||| |
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| T |
39356450 |
ttgggtctggctttgaatttctcagttttctattatga |
39356413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 24806921 - 24806969
Alignment:
| Q |
414 |
ttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaat |
462 |
Q |
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|||||||| ||||||||||||||||||| ||||| | ||||||||||| |
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| T |
24806921 |
ttttctatcaagcacggacacgtcaacatggataaaattttgagaaaat |
24806969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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