View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15734_low_20 (Length: 213)

Name: NF15734_low_20
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15734_low_20
NF15734_low_20
[»] chr1 (6 HSPs)
chr1 (49-200)||(7504659-7504810)
chr1 (53-211)||(12975446-12975604)
chr1 (53-211)||(33929215-33929372)
chr1 (75-208)||(37502351-37502482)
chr1 (53-208)||(44622098-44622250)
chr1 (78-205)||(10622257-10622384)
[»] chr3 (9 HSPs)
chr3 (53-211)||(1721713-1721871)
chr3 (49-208)||(32925147-32925306)
chr3 (77-208)||(1495201-1495331)
chr3 (57-211)||(20497529-20497683)
chr3 (98-208)||(25110241-25110351)
chr3 (53-211)||(34545494-34545651)
chr3 (57-211)||(41942569-41942723)
chr3 (54-133)||(46555692-46555771)
chr3 (107-148)||(28682107-28682148)
[»] chr8 (4 HSPs)
chr8 (53-211)||(32331931-32332089)
chr8 (53-211)||(41302770-41302928)
chr8 (53-168)||(27428113-27428228)
chr8 (51-208)||(43190528-43190685)
[»] chr2 (2 HSPs)
chr2 (57-211)||(36284746-36284900)
chr2 (145-203)||(38603511-38603569)
[»] chr4 (4 HSPs)
chr4 (49-211)||(43859596-43859757)
chr4 (78-170)||(15640186-15640278)
chr4 (102-211)||(9964433-9964542)
chr4 (161-211)||(2522056-2522105)
[»] chr5 (3 HSPs)
chr5 (57-199)||(8232235-8232375)
chr5 (101-211)||(3549244-3549354)
chr5 (53-117)||(7968298-7968362)
[»] chr6 (1 HSPs)
chr6 (57-203)||(3064465-3064611)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 7504810 - 7504659
Alignment:
Q  49 ctatgtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgatta 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7504810 ctatgtcctaataaaggacactcatgtagcatcatctagtaaggctaacgatagacatggtaatggttgatgcatcatcacaagagattctgaataatta 7504711  T
Q  149 acacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7504710 acacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatat 7504659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 12975446 - 12975604
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| ||||| || | ||||||||||||||||||||||||||| |||||||| ||| |||    
T  12975446 gtcctaataaaggacactcctgtagcatcagctagtaaggctaaggatagtcaagataatggttgatgcatcatcacaagagactctgaatgcttagcac 12975545  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    ||||||| |||| ||||||||| |||||||||||  ||| |||||||||||||||||||    
T  12975546 ctagttttgcaaatatatccgcgcaagagtttcccactctaaaaatatgatgaatggaa 12975604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 33929372 - 33929215
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||  ||||||||||||||| | |||||| ||| ||     
T  33929372 gtcctaataaaggacactcatgtagcatcggctagtaaggctaaggatagacatgataatggttgacacatcatcacaagagactttgaatgcttagcat 33929273  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    ||||||| |||| ||||||||| ||||| |||||  ||| |||||||||||||||||||    
T  33929272 ctagttttgcaaatatatccgcgcaagattttcc-cctctaaaaatatgatgaatggaa 33929215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 37502482 - 37502351
Alignment:
Q  75 tagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatatc-cg 173  Q
    |||||||| ||||||||| |||||||| |  ||||||||||||||| | ||||| ||||||||||||||||||| ||  || ||| |||||||||||  |    
T  37502482 tagcatca-ctagtaaggttaaagataaatgtggtaatggttgatgtaccatcataagagattctgaatgattagcatatacttttgcaagtatatctag 37502384  T
Q  174 cacaagagtttccttctcgaaaaatatgatgaatg 208  Q
    || ||| |||| |||||||||||||||||||||||    
T  37502383 ca-aag-gttttcttctcgaaaaatatgatgaatg 37502351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 44622250 - 44622098
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    |||||||||||| |||||||| || ||||  ||| ||||| |   |||||| |||||||||||| |||||  ||||||| |   ||||||||||    ||    
T  44622250 gtcctaataaagaacactcatataccatcggctaataaggtttgggatagatatggtaatggtttatgcacaatcacaatac--tctgaatgatcggtac 44622153  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatg 208  Q
    ||| |||| ||||||| ||||||||| |||||||||||| ||||||| ||||||||    
T  44622152 ctattttaacaagtatgtccgcacaa-agtttccttctcaaaaaatacgatgaatg 44622098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 10622384 - 10622257
Alignment:
Q  78 catcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatatccgcaca 177  Q
    ||||| ||||||||| | | || | ||||||||||||||||||||  ||||||| ||| |||||||||| | || | | |||| |||||||||||   ||    
T  10622384 catcaactagtaaggttgaggagacacatggtaatggttgatgcacaatcacaaaagactctgaatgatcagcatccactttaacaagtatatccatgca 10622285  T
Q  178 agagtttccttctcgaaaaatatgatga 205  Q
    | ||||| ||| |||| |||||||||||    
T  10622284 aaagttttcttttcgataaatatgatga 10622257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 1721713 - 1721871
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  1721713 gtcctaataaaggacactcctgtagcatcagctagtaaggctaaggatagacatgataatggttgatgcaccatcacaagagattctgaatgattaacac 1721812  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    || |||| ||||||||||| ||  |||||||||| |||| |||||||||||||||||||    
T  1721813 cttgttttgcaagtatatctgcgtaagagtttccctctctaaaaatatgatgaatggaa 1721871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 32925147 - 32925306
Alignment:
Q  49 ctatgtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgatta 148  Q
    ||||||||||||||||||||||| | ||| |||| ||||||||| | | |||| ||||| |||||||||||||| |||||||||||| |||||| |||||    
T  32925147 ctatgtcctaataaaggacactcctatagtatcagctagtaagggtgaggataaacatgataatggttgatgcaccatcacaagagactctgaaagatta 32925246  T
Q  149 acacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatg 208  Q
    ||||||||||| ||||||||||  || ||||||||| |||||||||||||||||||||||    
T  32925247 acacctagttttgcaagtatatatgcgcaagagttttcttctcgaaaaatatgatgaatg 32925306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 1495331 - 1495201
Alignment:
Q  77 gcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatatccgcac 176  Q
    |||||| ||||||||| | |  |||||||||||||||||||||| | |||||||||||| |||||||||||| || ||| ||| | |||||||||||| |    
T  1495331 gcatcaactagtaaggttgagaatagacatggtaatggttgatgtaccatcacaagagactctgaatgattagcatctaattttgtaagtatatccgcgc 1495232  T
Q  177 aagagtttccttctcgaaaaatatgatgaatg 208  Q
    |||||||| ||||| |||||||||||||||||    
T  1495231 aagagttttcttct-gaaaaatatgatgaatg 1495201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 20497683 - 20497529
Alignment:
Q  57 taataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctag 156  Q
    ||||||||| |||||   ||||||||  |||||||||| | ||||||||||||||||||||||| | |||||  ||||| |||  ||||||| |||||||    
T  20497683 taataaagggcactctcatagcatcaattagtaaggctgaggatagacatggtaatggttgatgtaccatcatgagagactcttgatgattagcacctag 20497584  T
Q  157 tttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    ||| |||||||| ||  | ||||||||||||||| |||||||||| |||||||||    
T  20497583 ttttgcaagtatgtcgacgcaagagtttccttcttgaaaaatatggtgaatggaa 20497529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 25110351 - 25110241
Alignment:
Q  98 gatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaa 197  Q
    |||||| ||| |||||||||||  ||||||||||||||||||||||||||| ||| || |||  ||||||||||||| |||||||||||||||| |||||    
T  25110351 gatagatatgataatggttgatatatcatcacaagagattctgaatgattagcacataattttacaagtatatccgcgcaagagtttccttctcaaaaaa 25110252  T
Q  198 tatgatgaatg 208  Q
    |||||| ||||    
T  25110251 tatgataaatg 25110241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 34545494 - 34545651
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    |||||||||| ||||||||   |||||||| ||||||||||| ||||||||||||  ||||||||||| | ||||||| |||| ||| |||||||| |||    
T  34545494 gtcctaataa-ggacactcccatagcatcagctagtaaggctgaagatagacatgagaatggttgatgtaccatcacatgagactctaaatgattagcac 34545592  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    ||| ||| | ||||||||  |  |||||||||||||||| |||||| ||||||||||||    
T  34545593 ctaattttgtaagtatatatgagcaagagtttccttctcaaaaaatttgatgaatggaa 34545651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 41942569 - 41942723
Alignment:
Q  57 taataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctag 156  Q
    |||||||||||| || | || ||||| ||||||||||| | |||||||||| | |||||||||||| ||||||||  || | ||| ||||||||||||||    
T  41942569 taataaaggacattcttataacatcagctagtaaggctgacgatagacatgatgatggttgatgcaccatcacaaatgactttgattgattaacacctag 41942668  T
Q  157 tttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    |||| ||| |||||  |  |||||||||| ||||||||||| | |||||||||||    
T  41942669 tttatcaactatatatgtgcaagagtttcattctcgaaaaacacgatgaatggaa 41942723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 46555692 - 46555771
Alignment:
Q  54 tcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaaga 133  Q
    |||||||||||||||||    ||| |||  |||||||||||||||||||||| |||||||||||||| | ||||||||||    
T  46555692 tcctaataaaggacacttccatagaatcggctagtaaggctaaagatagacacggtaatggttgatgtaccatcacaaga 46555771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 28682148 - 28682107
Alignment:
Q  107 ggtaatggttgatgcatcatcacaagagattctgaatgatta 148  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  28682148 ggtaatggttgatgcaccatcacaagagactctgaatgatta 28682107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 32332089 - 32331931
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||  ||    
T  32332089 gtcctaataaaggacactcttgtagcatcagctagtaaagctaaagatagacatgataatggttgatgcaccatcacaagagattctgattgattagtac 32331990  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    || |||| ||||||||||| || ||||||||||| |||| |||||||||||||||||||    
T  32331989 cttgttttgcaagtatatctgcgcaagagtttccctctctaaaaatatgatgaatggaa 32331931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 41302770 - 41302928
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||| ||||| |||||| |||    
T  41302770 gtcctaataaaggacactcctgtagcatcagctagtaaggctaaggatagacatgataatggttgatgcaccatcacaagagactctgattgattagcac 41302869  T
Q  153 ctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    || |||| ||||||||||  || ||||||||||| |||| |||||||||||||||||||    
T  41302870 cttgttttgcaagtatatatgcgcaagagtttccctctctaaaaatatgatgaatggaa 41302928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 27428113 - 27428228
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacac 152  Q
    ||||||||||||||||||| | ||||||||  |||||||||||| ||||||||||||||| |||||||   |||||||||||   ||||||||||  |||    
T  27428113 gtcctaataaaggacactcctatagcatcaattagtaaggctaaggatagacatggtaatagttgatgagccatcacaagaggccctgaatgattggcac 27428212  T
Q  153 ctagtttagcaagtat 168  Q
    ||||||| ||||||||    
T  27428213 ctagttttgcaagtat 27428228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 43190685 - 43190528
Alignment:
Q  51 atgtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaac 150  Q
    ||||| ||||||||||||||| | || |||||  |||||||| | |  |  ||| |||||||||||||||||| ||| ||||||| |||||||||||| |    
T  43190685 atgtcttaataaaggacactcctataacatcagatagtaaggttgagaaatgacgtggtaatggttgatgcattatcgcaagagaatctgaatgattagc 43190586  T
Q  151 acctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatg 208  Q
    |  |  ||||||||| ||||  || ||  |||||||||| | |||||| |||||||||    
T  43190585 atgtcatttagcaagcatatttgcgcagtagtttccttcccaaaaaatgtgatgaatg 43190528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 36284900 - 36284746
Alignment:
Q  57 taataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctag 156  Q
    |||||||||| ||| |  ||||||||  ||||||| |||| ||||||||| |||||||||  ||||||||||||||| ||| | |||||||| | ||||     
T  36284900 taataaaggatacttacatagcatcacttagtaagactaatgatagacatagtaatggttagtgcatcatcacaagatattttaaatgattatcccctaa 36284801  T
Q  157 tttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    |||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||    
T  36284800 tttagcaagtatatgcgcgcaagagttttcttcgcgaaaaatatgatgaatggaa 36284746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 38603569 - 38603511
Alignment:
Q  145 attaacacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgat 203  Q
    |||||||| ||||||| |||||||||||||  ||||||||| || || |||||||||||    
T  38603569 attaacacttagtttaacaagtatatccgcgtaagagtttctttttcaaaaaatatgat 38603511  T

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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 43859596 - 43859757
Alignment:
Q  49 ctatgtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgatta 148  Q
    |||||| |||||||||||||||||| | |||||| |   ||||| | | ||||||||| ||||||||||||||| |||||||||||| ||| ||| | ||    
T  43859596 ctatgtactaataaaggacactcatatggcatcaacctataagg-tgatgatagacatagtaatggttgatgcaccatcacaagagactctaaattagta 43859694  T
Q  149 acacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    | || ||||||||||| |||||  || | |||||||||||||||||||||| |||||||||||    
T  43859695 atacatagtttagcaaatatatttgcgctagagtttccttctcgaaaaatacgatgaatggaa 43859757  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 15640186 - 15640278
Alignment:
Q  78 catcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatat 170  Q
    ||||| ||||||| ||| | |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  15640186 catcagctagtaaagctgaggatagacatgataatggttgatgtatcatcacaagagactctgaatgattaacacctacttttgcaagtatat 15640278  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 9964542 - 9964433
Alignment:
Q  102 gacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatatg 201  Q
    |||| |||||||||||||| | |||||||||||| ||| |||||||| |||||| |||   || ||||| |   |||||| ||||||||| |||||||||    
T  9964542 gacaaggtaatggttgatgtaccatcacaagagactctaaatgattatcacctaattttttaaatatattcatgcaagagcttccttctcaaaaaatatg 9964443  T
Q  202 atgaatggaa 211  Q
    ||||||||||    
T  9964442 atgaatggaa 9964433  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 2522056 - 2522105
Alignment:
Q  161 gcaagtatatccgcacaagagtttccttctcgaaaaatatgatgaatggaa 211  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  2522056 gcaagtatatccgc-caagagtttccttcacgaaaattatgatgaatggaa 2522105  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 8232375 - 8232235
Alignment:
Q  57 taataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctag 156  Q
    ||||||||||||||| ||| |||| ||  |||||| | || |||||||||| || ||||||||||| | | |||||| | ||||| |||||| ||||||     
T  8232375 taataaaggacactcttgtggcatgat--agtaagaccaaggatagacatgatagtggttgatgcacctttacaagaaactctgactgattagcacctaa 8232278  T
Q  157 tttagcaagtatatccgcacaagagtttccttctcgaaaaata 199  Q
    ||| |||||||||||| | |||||||||||||||| |||||||    
T  8232277 ttttgcaagtatatccacgcaagagtttccttctctaaaaata 8232235  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 3549354 - 3549244
Alignment:
Q  101 agacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaatat 200  Q
    ||||||| ||||| |||||| | |||||||||||| ||||||| |||| ||||||||||   ||||| ||  || |||||||||||||||  ||||||||    
T  3549354 agacatgataatgattgatgtaccatcacaagagactctgaataattagcacctagttttaaaagtagatatgcgcaagagtttccttctaaaaaaatat 3549255  T
Q  201 gatgaatggaa 211  Q
    |||||||||||    
T  3549254 gatgaatggaa 3549244  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 7968298 - 7968362
Alignment:
Q  53 gtcctaataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttg 117  Q
    |||||||||||||||||||   |||||||| ||||||| ||| | |||||||||| |||||||||    
T  7968298 gtcctaataaaggacactccaatagcatcagctagtaaagctgaggatagacatgataatggttg 7968362  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 203
Target Start/End: Original strand, 3064465 - 3064611
Alignment:
Q  57 taataaaggacactcatgtagcatcatctagtaaggctaaagatagacatggtaatggttgatgcatcatcacaagagattctgaatgattaacacctag 156  Q
    ||||||| || |||| | |||||||| ||| ||| ||| | || | ||||| |||||||||||||| ||| | || ||| | |||||||||||||||||     
T  3064465 taataaatgatactcttatagcatcaactaataaagctgaggacaaacatgataatggttgatgcaccataaaaaaagactttgaatgattaacacctaa 3064564  T
Q  157 tttagcaagtatatccgcacaagagtttccttctcgaaaaatatgat 203  Q
    ||| ||| ||||||  || || |||||||||||||  ||||||||||    
T  3064565 ttttgcaggtatatatgcgcacgagtttccttctcataaaatatgat 3064611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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