View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_low_7 (Length: 363)
Name: NF15734_low_7
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 111 - 345
Target Start/End: Complemental strand, 35728779 - 35728545
Alignment:
| Q |
111 |
gaggtgcaatatgaggcaacatttgagttaccagtagattttggaaatgtgggtgctgttttggttgagaatgagcatgacaaagagatatttctaaaga |
210 |
Q |
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| T |
35728779 |
gaggtgcaatatgaggcaacatttgagttaccagtagattttggaaatgtgggtgctgttttggttgagaatgagcatgacaaagagatatttctaaaga |
35728680 |
T |
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| Q |
211 |
acatagtccttgatggtttccctgatggccctgtccaccttacttgtcaatcatggattcagcctaagcatgatactcctacaaagagagttttcttcac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35728679 |
acatagtccttgatggtttccctgatggccctgtccaccttacttgtcaatcatggattcagcctaagcatgatactcctacaaagagagttttcttcac |
35728580 |
T |
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| Q |
311 |
taacaaggtaataatgttaatcaaatagtataatc |
345 |
Q |
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| T |
35728579 |
taacaaggtaataatgttaatcaaatagtataatc |
35728545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 111 - 338
Target Start/End: Original strand, 35721148 - 35721375
Alignment:
| Q |
111 |
gaggtgcaatatgaggcaacatttgagttaccagtagattttggaaatgtgggtgctgttttggttgagaatgagcatgacaaagagatatttctaaaga |
210 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35721148 |
gaggtgcaatatgaggcaacatttgaggtaccagtagattttggaaatgtgggtgctgttttggttgagaatgagcatgacaaagagatatttctaaaga |
35721247 |
T |
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| Q |
211 |
acatagtccttgatggtttccctgatggccctgtccaccttacttgtcaatcatggattcagcctaagcatgatactcctacaaagagagttttcttcac |
310 |
Q |
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| T |
35721248 |
acatagtccttgatggtttccctgatggccctgtccaccttacttgtcaatcatggattcagcctaagcatgatactcctacaaagagagttttcttcac |
35721347 |
T |
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| Q |
311 |
taacaaggtaataatgttaatcaaatag |
338 |
Q |
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| T |
35721348 |
taacaaggtaataatgttaatcaaatag |
35721375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 322
Target Start/End: Original strand, 35706086 - 35706262
Alignment:
| Q |
146 |
agattttggaaatgtgggtgctgttttggttgagaatgagcatgacaaagagatatttctaaagaacatagtccttgatggtttccctgatggccctgtc |
245 |
Q |
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||||||||| || || |||||| || | ||||||||||||| |||| ||| | ||| |||||| ||||| ||| |||| ||||||||||||||| | |
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| T |
35706086 |
agattttgggaaggttggtgctattctaattgagaatgagcaacacaaggagttgtttttaaagactatagttcttcatggcttccctgatggccctctt |
35706185 |
T |
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| Q |
246 |
caccttacttgtcaatcatggattcagcctaagcatgatactcctacaaagagagttttcttcactaacaaggtaat |
322 |
Q |
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| T |
35706186 |
aacctcacatgcaattcctggattcaacccaagcaagatagtcctgcgaagagagttttcttcaccgacaaggtaat |
35706262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 35728876 - 35728846
Alignment:
| Q |
14 |
agacctcacatttatttaatattatacgaat |
44 |
Q |
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| T |
35728876 |
agacctcacatttatttaatattatacgaat |
35728846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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