View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15734_low_8 (Length: 330)
Name: NF15734_low_8
Description: NF15734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15734_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 40157846 - 40158160
Alignment:
| Q |
1 |
ttcttcgcatataggaaaagctattatgtacatattttgaaagnnnnnnnnnnntcgacccaaattaactacaattgttacaaattacacgttttgtttc |
100 |
Q |
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| T |
40157846 |
ttcttcgcatataggaaaagctattatgtacatattttgaaagaaaaaaaaat-tcgacccaaattaactacaattgttacaaattacacgttttgtttc |
40157944 |
T |
|
| Q |
101 |
tacaaatatatagaagtatccatatgtaaatattaccccaatactttaagctggaggtttaaaacacgaatatttcaacaannnnnnngatgggaataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
40157945 |
tacaaatatatagaagtatccatatgtaaatattaccccaatactttaagctggaggtttaaaacacgaatatttccacaatttttttgacgggaataca |
40158044 |
T |
|
| Q |
201 |
ttttttatcaagcaactaaatcagctgcaacaagagaagaagtaatacaatgaagacaactctcaatctaaactatatttgactaaaaaatgaatagcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40158045 |
ttttttatcaagcaactaaatcagctgcaacaagagaagaagtaatacaatgaagacaactctcaatctaaactatatttgactaaaaaatgagtagcta |
40158144 |
T |
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| Q |
301 |
catcagcacttcattt |
316 |
Q |
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|||||||||| ||||| |
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| T |
40158145 |
catcagcactacattt |
40158160 |
T |
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