View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_high_11 (Length: 551)
Name: NF15735_high_11
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Complemental strand, 43018754 - 43018216
Alignment:
| Q |
14 |
atcaattgtaaactctattcaaccaggctctcataccatatcaagaagtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaaccgat |
113 |
Q |
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| T |
43018754 |
atcaattgtaaactatattcaaccaggctctcataccatatcaagaagtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaaccgat |
43018655 |
T |
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| Q |
114 |
atatatacacatttgatattgtactcgtaactaacttacactctagttgtactacattatatgagaaatgttctacattcagagacttgcaccacaagct |
213 |
Q |
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| T |
43018654 |
atatatacacatttgatattgtactcgtaactaacttacactctagttgtactacattatatgagaaatgttctacattcagtgacttgcaccacaagct |
43018555 |
T |
|
| Q |
214 |
acaactactaactctcttctttcacttttatttgttcatggtgcaataactacaagtacattcttgacaattgggaggacaaaaacatgtgcttcattct |
313 |
Q |
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| T |
43018554 |
acaactattaactctcttctttcacttttatttgttcatggtgcaataactacaagtacattcttgacaattgggaggacaaaaacatgtgcttcattct |
43018455 |
T |
|
| Q |
314 |
ttagcttagtttcttgcctcacatccaacctaaagacatgcttacttactcctccaaagtgttacttcattccctcctttcaattgtccctcaggatgtg |
413 |
Q |
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| T |
43018454 |
ttagcttagtttcttgcttcacatccaacctaaagacatgcttacttactcctccaaagtgttacttcattccctcctttcaattgtccctcaggatgtg |
43018355 |
T |
|
| Q |
414 |
ttttagatcgagagtttagaagatgaaggaaggaaagaactcacttttattttttaaatcatgaacaataaaatgtatgnnnnnnnnnna----aaatta |
509 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
43018354 |
ttttagatcaagagtttagaagatgaaggaaggaaagaactcacttttattttttaaatcatgaacaataaaatgtatgtttttattttattttaaatta |
43018255 |
T |
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| Q |
510 |
aacattttggtgtctgtaatttaaaaaagaaaattaaac |
548 |
Q |
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| T |
43018254 |
aacattttggtgtctgtaatttaaaaaggaaaattaaac |
43018216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 67 - 317
Target Start/End: Complemental strand, 35057948 - 35057709
Alignment:
| Q |
67 |
aaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatatatacacatttgatattgtactcgtaactaacttacactctagttgtact |
166 |
Q |
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|||| |||||||||| |||||||||||||| ||| ||| |||| |||||||||| ||||||||| ||||||| |||||||||| ||||| |
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| T |
35057948 |
aaaagtgaagaatttctcattaattgaatagagagtttgcaactgatatatatatacatttgatcatgtactcttaactaactt-----------gtact |
35057860 |
T |
|
| Q |
167 |
acat--tatatgagaaatgttctacattcagagacttgcaccacaagctacaactactaactctcttctttcacttttatttgttcatggtgcaataact |
264 |
Q |
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|| | |||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
35057859 |
acgtactatatgagaaatgtactacattaagtgacttgcactacaagctacaactattaactct--tctttcacttttatttgttcatggtggaataact |
35057762 |
T |
|
| Q |
265 |
acaagtacattcttgacaattgggaggacaaaaacatgtgcttcattctttag |
317 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35057761 |
acaactacattcttgacaattgggatgacaaaaacctgtgcttcattctttag |
35057709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 21090295 - 21090240
Alignment:
| Q |
427 |
gtttagaagatgaaggaaggaaagaactcacttttattttttaaatcatgaacaat |
482 |
Q |
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|||||| ||| ||||| |||| || ||||||||||||||||||||| ||||||||| |
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| T |
21090295 |
gtttaggagaggaagggaggagaggactcacttttattttttaaattatgaacaat |
21090240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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