View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_high_2 (Length: 838)
Name: NF15735_high_2
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 14 - 827
Target Start/End: Original strand, 39138348 - 39139157
Alignment:
| Q |
14 |
cttccagcaccaacattgggaggtcttcaactctagaaaaatttgccaacttacatacgcaagagttcaggtatttaactactacattatat----atat |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39138348 |
cttccagcaccaacattgggaggtcttcaattctagaaaaatttgccaactcacatacgcaagagttcaggtatttaactactacattatatgtatatat |
39138447 |
T |
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| Q |
110 |
tgttttggttacatatagtcggatagcatttgggtgacgttgggtttttaatgttatgtgatattggtcaatcatgatatgtcacagtt-------tttg |
202 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
39138448 |
tgttttggttacatatagtctgatagcacttgggtgacgttgggcttccaatgttatgtgatattggtcaatcatgatatgtcacatttcacaatttttg |
39138547 |
T |
|
| Q |
203 |
ttaaaatataacaaaaatctgtaaaagatagagtaaaaaactacttgttacattgtgattgatcaatgtcaaatgacattggtac----ctcaatgtcat |
298 |
Q |
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| T |
39138548 |
ttaaaatataacaaaaa-------------------aaaactacttgttacattgtgattgatcaatgtcagatgacattggtacgtacctcaatgtcat |
39138628 |
T |
|
| Q |
299 |
ctaagtatcattgccatctaagtgctacccaccggccaccgtagtccacatgaataagtcacataatgataccataatgatttgttgagaaaataaactt |
398 |
Q |
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|||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
39138629 |
ctaagtatcaatggcatctaagtgctatccaccggccaccgtagtccacatgaataagtcacataatca---catgatgatttgttgagaaaataaactt |
39138725 |
T |
|
| Q |
399 |
gtgtannnnnnnnn---atttatgaaaagggtttggaagcgttgaaagagcattttaagaactcaaagttcccgtgtgagatggagcattacctgcccgt |
495 |
Q |
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| T |
39138726 |
gtgtatttttttttttaatttatgaaaagggtttggaatcgttgaaagagcattttaagaactcaaagttcccgtgtgagatggagcattacctgccagt |
39138825 |
T |
|
| Q |
496 |
ggtgttttcaccgcctcgagatggaaaacaattgacggagccaattccagtggcggggaacatgctacaaattggtgctgctccttctgtagcttatgag |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39138826 |
ggtgttttcaccgcctcgagatggaaaacaattgacggagccaattccagtggcggggaacatgctacaaattggtgctgctccttctgtagctgatgag |
39138925 |
T |
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| Q |
596 |
atggaagctcaagatcatagagtaggtagtggtggctgtgacatgatcagcagaaaaagtggcggcataggggatgatgatgatgataaaacagatgtga |
695 |
Q |
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| T |
39138926 |
atggaaggtcaagatcatagagtaggtagtggtggctgtgacgtgatcagcagaaaaagtggcggcataggtgatgatgatgatgataaaacagatgtga |
39139025 |
T |
|
| Q |
696 |
agtgaagtaaagaagctgggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggtggttgttgagcaacgagccaca |
795 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139026 |
agtgaagtaaagaagctgggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggtggttgttgagcaacgagccaca |
39139125 |
T |
|
| Q |
796 |
cttgtgttctcttttcatagtgctctctgctc |
827 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39139126 |
cttgtgttctcttttcatagtgctctctgctc |
39139157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 16205765 - 16205713
Alignment:
| Q |
245 |
acttgttacattgtgattgatcaatgtcaaatgacattggtacctcaatgtca |
297 |
Q |
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| T |
16205765 |
acttgtgacattgtggttgatcaatgtcacatgacattggcaccccaatgtca |
16205713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 22616641 - 22616686
Alignment:
| Q |
252 |
acattgtgattgatcaatgtcaaatgacattggtacctcaatgtca |
297 |
Q |
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| T |
22616641 |
acattgtggttgatcaatgtcacatgacattgatacctcagtgtca |
22616686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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