View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_high_24 (Length: 449)
Name: NF15735_high_24
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 39013727 - 39013310
Alignment:
| Q |
19 |
acttggtcaataatcaatgcgacgaggaagatgaagaaggaaatacaaaacaattgatggcattttatcacgatcgccttcgtgacacaagggaaaaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39013727 |
acttggtcaataatcaatgcgacgaggaagatgaagaaggaaatacaaaacaattgatggcattttatcacgatcgccttcgtgacacaagggaaaaaga |
39013628 |
T |
|
| Q |
119 |
gacgaggagtaatgaggaagaaatggatgaagagaaggtagaggagcatgaacatgaaagcatcagtagttgctcagatcatgaacttggtgattgtcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39013627 |
gacgaggagtaatgaggaagaaatggatgaagagaaggtagaggagcatgaacatgaaagcatcagtagtggctcagatcatgaacttggtgattgtcaa |
39013528 |
T |
|
| Q |
219 |
tcctcatcatcagcagacacaccatcctcagcaacgtggagttatagagacactgatattggagatgattctgatagagttgcatttgtatcctcaccat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39013527 |
tcctcatcatcagcagacacaccatcctcagcaacatggagttatagagacactgatattggagatgattctgatagagttgcatttgtatcctcaccat |
39013428 |
T |
|
| Q |
319 |
tgccttctcaatctcaatcttgctatgaagatagtagagaaaactctccatctgcaaatcaacgttcaattgtgagtttcattatactcttacacctaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39013427 |
tgccttctcaatctcaatcttgctatgaagatagtagagaaaactctccatccgcaaatcaacgttcaattgtgagtttcattatactcttacacctaga |
39013328 |
T |
|
| Q |
419 |
tttaactatgtacatgtt |
436 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39013327 |
tttaactatgtacatgtt |
39013310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University