View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_high_28 (Length: 417)
Name: NF15735_high_28
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 14790851 - 14790467
Alignment:
| Q |
15 |
gaagatgataaagaaaaccgaacatgtcgtggcgacacctctgattttctagcactgcctctagctgaaccatttttcaaaacacctttaagttggtctt |
114 |
Q |
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| T |
14790851 |
gaagatgataaagaaaaccgaacatgtcgtggcgacacctccgattttctagcactgcctctagctgaaccatttttcaaaacacctttaagttggtctt |
14790752 |
T |
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| Q |
115 |
tttcataaaccaaagatgaagaaataggtgaatctacttcaatagcactaccatatttcatcaattccaatggaagatcaaagtaagagttattagaatc |
214 |
Q |
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| T |
14790751 |
tttcataaaccaaagatgaagaaataggtgaatctacttcaatagcactaccatatttcatcaattccaatggaagatcaaagtaagagttattagaatc |
14790652 |
T |
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| Q |
215 |
tccatcaatctcatgagacatagctgcagaagcccaagagccacattcaaaattctccaatgaaacattcctagacatagttggagctactttttctgat |
314 |
Q |
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| T |
14790651 |
tccatcaatctcatgagacatagctgcagaagcccaagagccacattcaaaattctccaatgaaacattcctagacatagttggagctactttttctgat |
14790552 |
T |
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| Q |
315 |
acttcctttcttattttaattggctttattttaccaacaaagttaggtnnnnnnngacaaagagaattacatctgaatccatcat |
399 |
Q |
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| T |
14790551 |
acttcctttcttattttaattggctttattttaccaacaaagttaggtaaaaaaagacaaagagaattacatttgaatccatcat |
14790467 |
T |
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