View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_high_29 (Length: 386)
Name: NF15735_high_29
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 48 - 373
Target Start/End: Original strand, 36196475 - 36196800
Alignment:
| Q |
48 |
cagctacaatatgctatactatttagcaaaagtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196475 |
cagctacaatatgctatactatttagcaaaagtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaatt |
36196574 |
T |
|
| Q |
148 |
cctccctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196575 |
cctccctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagca |
36196674 |
T |
|
| Q |
248 |
tttgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196675 |
tttgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
36196774 |
T |
|
| Q |
348 |
gacttatgattttcatcatctctgct |
373 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36196775 |
gacttatgattttcatcatctctgct |
36196800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 52 - 373
Target Start/End: Original strand, 36188158 - 36188482
Alignment:
| Q |
52 |
tacaatatgctatactatttagcaaaag-tgacttgttaaca---gaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaatt |
147 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| ||| |||||| |||||| |||||||||||||||||| | ||| ||| ||||||| |
|
|
| T |
36188158 |
tacaatatgttatactatttagcaaaccatgacttgttaacaacagaacaaaccataccaaacctagttcaaaccattttattagagaggaaggtgaatt |
36188257 |
T |
|
| Q |
148 |
cctccctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagca |
247 |
Q |
| |
|
|| ||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188258 |
cccccctccctttaaagagccacagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagca |
36188356 |
T |
|
| Q |
248 |
tttgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188357 |
tttgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
36188456 |
T |
|
| Q |
348 |
gacttatgattttcatcatctctgct |
373 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36188457 |
gacttatgattttcatcatctctgct |
36188482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 48 - 373
Target Start/End: Original strand, 36209598 - 36209923
Alignment:
| Q |
48 |
cagctacaatatgctatactatttagcaaa-agtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaat |
146 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||| |||| | ||| ||| |||||| |
|
|
| T |
36209598 |
cagctacaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaat |
36209697 |
T |
|
| Q |
147 |
tcctccctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagc |
246 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
36209698 |
tcttccctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagc |
36209797 |
T |
|
| Q |
247 |
atttgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgttt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36209798 |
atttgacagaatacaaaatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgttt |
36209896 |
T |
|
| Q |
347 |
ggacttatgattttcatcatctctgct |
373 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
36209897 |
cgacttcagattttcatcatctctgct |
36209923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 36184218 - 36184376
Alignment:
| Q |
52 |
tacaatatgctatactatttagcaaaagtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctc |
151 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||| | |||||| |
|
|
| T |
36184218 |
tacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccct |
36184317 |
T |
|
| Q |
152 |
cctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccata |
210 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
36184318 |
cctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
36184376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 36200418 - 36200545
Alignment:
| Q |
81 |
gacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctccctccctttaaagaaccacagacgaaatt |
180 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||||| ||||| ||||||| ||||||||||||||| ||| |||| |||||||| | |||| | |
|
|
| T |
36200418 |
gacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaaccacataggaaaat |
36200517 |
T |
|
| Q |
181 |
actgcaagaaacaggggaaatcttacca |
208 |
Q |
| |
|
| ||||||||||| | |||||||||||| |
|
|
| T |
36200518 |
aatgcaagaaacaagagaaatcttacca |
36200545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
271 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
352 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 370
Target Start/End: Original strand, 36207688 - 36207824
Alignment:
| Q |
234 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
332 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
|
|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
333 |
cgatgtgcatgtttggacttatgattttcatcatctct |
370 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |
|
|
| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactct |
36207824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 372
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
260 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
359 |
Q |
| |
|
|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
|
|
| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
|
| Q |
360 |
tcatcatctctgc |
372 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 36184500 - 36184643
Alignment:
| Q |
234 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
328 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
329 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgct |
373 |
Q |
| |
|
| | ||| | ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgct |
36184643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 36200857 - 36200944
Alignment:
| Q |
259 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
347 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttg |
36200944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University