View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_high_3 (Length: 759)

Name: NF15735_high_3
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_high_3
NF15735_high_3
[»] chr5 (11 HSPs)
chr5 (8-741)||(15807444-15808177)
chr5 (162-347)||(41859542-41859727)
chr5 (151-347)||(42629498-42629694)
chr5 (151-344)||(9575310-9575503)
chr5 (187-348)||(42840417-42840578)
chr5 (168-268)||(1040119-1040219)
chr5 (292-347)||(42637359-42637414)
chr5 (154-260)||(42637224-42637330)
chr5 (652-714)||(15815386-15815451)
chr5 (652-714)||(15831701-15831766)
chr5 (290-347)||(40545121-40545178)
[»] chr8 (2 HSPs)
chr8 (87-344)||(3367655-3367912)
chr8 (15-87)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (369-580)||(25287071-25287282)
chr2 (154-235)||(16921102-16921183)
chr2 (286-347)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (87-347)||(45866864-45867124)
chr7 (294-347)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (495-630)||(17204357-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (292-347)||(10487-10542)
scaffold0129 (253-347)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (252-347)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (292-347)||(5162456-5162511)
chr3 (23-87)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 730; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Original strand, 15807444 - 15808177
Alignment:
Q  8 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807444 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 15807543  T
Q  108 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807544 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 15807643  T
Q  208 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807644 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 15807743  T
Q  308 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaatatcaactactactacctatatatttctt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15807744 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaacatcaactactactacctatatatttctt 15807843  T
Q  408 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807844 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 15807943  T
Q  508 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807944 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 15808043  T
Q  608 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808044 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 15808143  T
Q  708 ggaacaacctatgaattaggaggaacgacctata 741  Q
    ||||||||||||||||||||||||||||||||||    
T  15808144 ggaacaacctatgaattaggaggaacgacctata 15808177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 162 - 347
Target Start/End: Original strand, 41859542 - 41859727
Alignment:
Q  162 accaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaatagga 261  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||||  |||||||||||||| | ||| || ||||| || ||||||| || ||||||||||    
T  41859542 accaaggtcttcaattctctgggtgcttaaattaaacaaaactagttcattatcctttttccggaaaaacatatctcctttcttaccaactccaatagga 41859641  T
Q  262 tgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
     | | ||   | | ||| ||||||||||  ||||||||| ||||||||||||| | |||||||||||| |||| |||||| |||||    
T  41859642 cgcttaacatcggacaacggacctacaacgaagagtttgatccatgactctttaatcccaacttcacctaaaactgatatatgaaa 41859727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 151 - 347
Target Start/End: Original strand, 42629498 - 42629694
Alignment:
Q  151 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 250  Q
    |||||||| |||||||||||||| ||| | |||||| |||||| ||| |||||||  |  |||||||||||| | ||| ||||||| || || |||| ||    
T  42629498 tcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccttttttttcaagtatatatcaccatttttaccaa 42629597  T
Q  251 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
     |||||||||||| ||||  |  | ||| ||||| |||||||| |||||| |||||||||| || |  || |||||||||||||||||||| |||||    
T  42629598 ctccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaa 42629694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 9575310 - 9575503
Alignment:
Q  151 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 250  Q
    ||||||||||||||||||||| | ||| |||||||| |||||| ||||| | |||| | ||||||||||||||| |||||||| || ||||| |||| ||    
T  9575310 tcacctttaacaccaagctctacaattttctgggtgattaaattaaacctagctaattgattatccttttttctaaagaatatgtcaccctttttaccaa 9575409  T
Q  251 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 344  Q
     ||| |||||||| | ||       ||| ||| |||| || |||||||||||||||||||| || |  ||||||| | |||||| |||||||||    
T  9575410 ctcctataggatgcttaacatagaacaacggatctacgatgaagagtttggtccatgactccttcattccaactttatccaaaactgatatgtg 9575503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 348
Target Start/End: Original strand, 42840417 - 42840578
Alignment:
Q  187 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 286  Q
    ||||||||||||||| |||  ||||| || |||||| | |  ||||||| ||||||||| |    |||||| ||||  |||| || ||| || ||||| |    
T  42840417 cttaaatcaaaccaagctagttcattgtctttttttataatcaatatattgcccttcttccctgctccaattggatactcaaggcaaggtaagggaccaa 42840516  T
Q  287 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaat 348  Q
    ||||||||| ||| |||||||| ||||| |  |||| ||||||||||||||| |||||||||    
T  42840517 caataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaat 42840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 1040119 - 1040219
Alignment:
Q  168 ctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttca 267  Q
    |||||| ||||| || |||||||| | |||||||||||| ||||  || |||||||| |||||||||||  |||||||||  | |||||||||||| |||    
T  1040119 ctcttcaattctttgagtgcttaagttaaaccaaactaattcatcgtcgttttttctaaagaatatatcttccttcttaccgactccaataggatgctca 1040218  T
Q  268 a 268  Q
    |    
T  1040219 a 1040219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 42637359 - 42637414
Alignment:
Q  292 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    ||||||||||||||||| || || | ||| ||||||||||||||||||||||||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaa 42637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 42637224 - 42637330
Alignment:
Q  154 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattc 253  Q
    |||||||||||||  | || |||||| || || ||||||| ||| |||||||  |||| ||| |||||||| ||||||||||| || |||||||  | ||    
T  42637224 cctttaacaccaaattgttggattctttgtgtacttaaattaaagcaaactagttcatcatcgttttttctaaagaatatatcaccattcttactcactc 42637323  T
Q  254 caatagg 260  Q
    |||||||    
T  42637324 caatagg 42637330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 714
Target Start/End: Original strand, 15815386 - 15815451
Alignment:
Q  652 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 714  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15815386 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 714
Target Start/End: Original strand, 15831701 - 15831766
Alignment:
Q  652 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 714  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15831701 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15831766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 40545178 - 40545121
Alignment:
Q  290 taaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    |||| |||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  40545178 taaaaagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 40545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 87 - 344
Target Start/End: Original strand, 3367655 - 3367912
Alignment:
Q  87 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 186  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||| ||||    
T  3367655 ctaattgttttttctttcaagcggcagaaggctttccttataaatcattatccggcaacacaagccacctttaacaccaagctcttcaattctctaggtg 3367754  T
Q  187 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 286  Q
    |||||||  || |||| |  ||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||| ||||||||    
T  3367755 cttaaatttaaacaaatttgctcattatctttttttctgaagaatatatcgcccttcttgccaataccaataggatgttcaatgtcacgcataggaccta 3367854  T
Q  287 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 344  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  3367855 caataaagagtttggtccatgactctttgaccccaacttcacctaaaattgatatgtg 3367912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 3367529 - 3367598
Alignment:
Q  15 cagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 87  Q
    |||||| ||||||||||||||| |||||||||||| ||||   |||||||||||| | ||| |||||||||||    
T  3367529 cagataaccaatatcagtaatgatgtattgccatatcatt---atgctcacaaagtaaaaactaaaataaaac 3367598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 9e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 369 - 580
Target Start/End: Original strand, 25287071 - 25287282
Alignment:
Q  369 ttttgataaatatcaactactactacctatatatttcttcagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaa 468  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||    
T  25287071 ttttgataaatatcaactactaccgcctatatatttcttcagtttaattttattacatgactctaatcctattgccttaaacaacaataacacaattcaa 25287170  T
Q  469 tccttcaccaaaaatcaattttcacataaaatccattttcacatgcatcaaccaaccacaacaaatc-taaagttcaaaaaataagacataaaatataac 567  Q
    ||||||| | |||||| ||||||||||||||||||||  ||||| |||||||| |||||||||||||  |||||| |||||| |||||||||| ||||||    
T  25287171 tccttcagcgaaaatcgattttcacataaaatccattaacacatacatcaacc-accacaacaaatcaaaaagttaaaaaaagaagacataaattataac 25287269  T
Q  568 taccttagcatcc 580  Q
    |||||||||||||    
T  25287270 taccttagcatcc 25287282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 16921183 - 16921102
Alignment:
Q  154 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatat 235  Q
    |||||||||||||||||||| ||  | |||||  | ||||||||||| ||||  |||||||| | |||||||||||||||||    
T  16921183 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 16921102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 44937800 - 44937861
Alignment:
Q  286 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    |||| ||||||||| |||||||| ||||| |  || | ||||||||||||||||||||||||    
T  44937800 acaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaa 44937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 87 - 347
Target Start/End: Complemental strand, 45867124 - 45866864
Alignment:
Q  87 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 186  Q
    |||||||||  ||||  ||| |||||||||||||||||||||||  |||||| |||||  ||| | ||||||||||||||||||||| ||| |||| |||    
T  45867124 ctaattgttgattctggcaatcggtagaaggctttccttataaactattatctggcaaagtgaataacctttaacaccaagctcttcaattttctgtgtg 45867025  T
Q  187 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 286  Q
    ||||||| |||  ||||||  |||| ||| | |||||| ||||||||||| ||| |||||| ||||| ||||||||| || |  | || ||||| ||| |    
T  45867024 cttaaattaaatgaaactagttcatcatcttcttttctaaagaatatatcacccgtcttaccaattctaataggatggtcgacacaagacaaagaaccca 45866925  T
Q  287 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    ||||||| |||||| |||||||||| || |  |||| |||||| |||||||||||||||||    
T  45866924 caataaaaagtttgatccatgactccttcactccaatttcacctaaaattgatatgtgaaa 45866864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 42446402 - 42446349
Alignment:
Q  294 gagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    ||||||||||||||| || ||||   ||| ||||||||||||||||||||||||    
T  42446402 gagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaa 42446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 495 - 630
Target Start/End: Complemental strand, 17204497 - 17204357
Alignment:
Q  495 taaaatccattttcacatgcatcaaccaaccacaacaaatcta-aagttcaaaaaataagacata-aaat-ataactaccttagcatcctgatcaaa--c 589  Q
    |||||||||||| ||||| |||||||||||||||||||||| | |||||| |||| ||||||||| |||| ||||||||||||||||||||| ||||  |    
T  17204497 taaaatccatttccacatacatcaaccaaccacaacaaatcaacaagttccaaaactaagacatacaaatcataactaccttagcatcctgaccaaactc 17204398  T
Q  590 ctccttaagcatcccaatagaaccaggatcacaagcatcat 630  Q
    || |||||  |||||||||||||||||| ||||| ||||||    
T  17204397 cttcttaaaaatcccaatagaaccaggaccacaaacatcat 17204357  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 10542 - 10487
Alignment:
Q  292 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    |||||||| ||||| ||||| || |  |||||||||||||||||||||||||||||    
T  10542 aagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaa 10487  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 33521 - 33615
Alignment:
Q  253 ccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    ||||||||||| || |||| ||| ||||| || | |||||||||||| ||||| ||||| || |  |||| |||||||||||| || ||||||||    
T  33521 ccaataggatgctcgatgcaaggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaa 33615  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 29131415 - 29131320
Alignment:
Q  252 tccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    |||||||||| | |||| ||||| ||| || || ||||| ||||  |||||||| || ||||| |  |||| ||||||||||||||||||||||||    
T  29131415 tccaataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaa 29131320  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 5162511 - 5162456
Alignment:
Q  292 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 347  Q
    ||||||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 5162456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 53691573 - 53691512
Alignment:
Q  23 caatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 87  Q
    ||||||||||||||||||||||| ||| || |   |||||||||||| ||||| |||||||||||    
T  53691573 caatatcagtaatggtgtattgcaataccaat---atgctcacaaagtagaaactaaaataaaac 53691512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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