View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_high_36 (Length: 358)
Name: NF15735_high_36
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 2973025 - 2972703
Alignment:
| Q |
4 |
gtgagatgaactaacggcgtaaccgtgccgttgacggttactcggtccgaaaataaaggacgatccatctccggaaagtggaccccaccaatctcagccg |
103 |
Q |
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| T |
2973025 |
gtgagaagagctaacggcgttaccgtgccgttgacggttactcggtccgaaaataaaggacgatccatctccggaaagtggaccccaccaatctcagccg |
2972926 |
T |
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| Q |
104 |
gaaacccggttcagtaaatgaaatccggttttcacgtctcggagataattacgattacaaattataagtaatgaataaataaattattaatactatacta |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
2972925 |
gaaacccggttcagtaaatgaaatccggttttcacgtctcggagataattacgattacaaattataaat------------aattattaatactatacta |
2972838 |
T |
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| Q |
204 |
tactatagattatagaatatggttttcacaatgatggagaatgaaactaagaaagcactaaacattaacatgaaatgtgtttactaattttgattatann |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2972837 |
---tatagattatagaatatggttttcacaatgatggagaatgaaactaagaaagcactaaacattaacatgaaatgtgtttactaattttgattatatt |
2972741 |
T |
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| Q |
304 |
nnnnnnnctctctggctgccttgactttgacgccaatt |
341 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2972740 |
tttttttctctctggctgccttgactttgacgccaatt |
2972703 |
T |
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