View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_high_40 (Length: 335)

Name: NF15735_high_40
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_high_40
NF15735_high_40
[»] chr8 (28 HSPs)
chr8 (1-325)||(6580794-6581118)
chr8 (64-191)||(33440530-33440657)
chr8 (64-219)||(28700581-28700736)
chr8 (64-225)||(30085370-30085531)
chr8 (69-201)||(45057925-45058057)
chr8 (129-207)||(16896336-16896414)
chr8 (64-169)||(1311488-1311593)
chr8 (82-170)||(33133476-33133564)
chr8 (82-187)||(13990496-13990601)
chr8 (69-186)||(34434946-34435063)
chr8 (65-169)||(35188402-35188506)
chr8 (69-147)||(12212155-12212233)
chr8 (69-147)||(12456583-12456661)
chr8 (112-218)||(35689481-35689587)
chr8 (72-153)||(14022030-14022111)
chr8 (147-208)||(28700564-28700625)
chr8 (95-141)||(36927056-36927102)
chr8 (121-162)||(31024183-31024224)
chr8 (69-129)||(16895274-16895334)
chr8 (85-145)||(31703822-31703882)
chr8 (46-132)||(9905821-9905906)
chr8 (111-169)||(11781515-11781573)
chr8 (85-154)||(902419-902488)
chr8 (112-209)||(1205837-1205934)
chr8 (147-208)||(33440613-33440674)
chr8 (178-218)||(30085518-30085558)
chr8 (40-108)||(33440506-33440574)
chr8 (142-190)||(45058013-45058061)
[»] chr4 (31 HSPs)
chr4 (46-224)||(37306399-37306577)
chr4 (64-226)||(43480270-43480432)
chr4 (69-219)||(51475162-51475312)
chr4 (72-219)||(31699477-31699624)
chr4 (64-224)||(6540251-6540411)
chr4 (64-225)||(30111795-30111955)
chr4 (44-165)||(50251505-50251626)
chr4 (94-209)||(39810467-39810581)
chr4 (65-138)||(22036957-22037030)
chr4 (110-219)||(24414473-24414584)
chr4 (85-191)||(16650481-16650587)
chr4 (109-162)||(51823131-51823184)
chr4 (85-184)||(21710554-21710652)
chr4 (111-218)||(42862493-42862600)
chr4 (135-209)||(39401321-39401395)
chr4 (131-219)||(21776508-21776594)
chr4 (147-208)||(31699588-31699649)
chr4 (64-193)||(37422929-37423058)
chr4 (134-203)||(53514503-53514572)
chr4 (143-219)||(41095224-41095300)
chr4 (85-173)||(48129793-48129881)
chr4 (158-209)||(51206165-51206216)
chr4 (93-163)||(9051004-9051074)
chr4 (121-162)||(1869362-1869403)
chr4 (104-149)||(27789954-27789999)
chr4 (69-154)||(50815358-50815443)
chr4 (121-193)||(2834202-2834274)
chr4 (175-219)||(6011580-6011624)
chr4 (148-208)||(16650565-16650625)
chr4 (117-169)||(19447181-19447233)
chr4 (77-169)||(26369056-26369148)
[»] chr1 (30 HSPs)
chr1 (64-219)||(24886065-24886220)
chr1 (85-219)||(29068127-29068261)
chr1 (64-184)||(19078939-19079059)
chr1 (64-184)||(19126827-19126947)
chr1 (45-170)||(931990-932113)
chr1 (45-139)||(11709656-11709748)
chr1 (82-189)||(16173054-16173160)
chr1 (64-195)||(31602087-31602218)
chr1 (85-207)||(43275787-43275909)
chr1 (82-145)||(14562603-14562666)
chr1 (83-193)||(17642398-17642506)
chr1 (64-209)||(11135749-11135894)
chr1 (112-218)||(11430442-11430548)
chr1 (147-204)||(24886052-24886109)
chr1 (112-209)||(41918005-41918102)
chr1 (69-146)||(52444448-52444524)
chr1 (82-189)||(4578619-4578727)
chr1 (112-218)||(32848656-32848762)
chr1 (121-219)||(43161199-43161297)
chr1 (123-192)||(12876068-12876137)
chr1 (67-151)||(8050037-8050121)
chr1 (85-209)||(41095655-41095779)
chr1 (158-208)||(19078922-19078972)
chr1 (158-208)||(19126810-19126860)
chr1 (158-208)||(29068089-29068139)
chr1 (64-98)||(48863761-48863795)
chr1 (142-219)||(4853573-4853649)
chr1 (116-164)||(15449946-15449994)
chr1 (117-193)||(27464709-27464784)
chr1 (117-193)||(48863759-48863835)
[»] chr2 (25 HSPs)
chr2 (77-224)||(5139963-5140110)
chr2 (82-225)||(6951742-6951886)
chr2 (69-210)||(864107-864248)
chr2 (45-185)||(42635316-42635456)
chr2 (69-219)||(7709779-7709928)
chr2 (44-170)||(37285162-37285288)
chr2 (64-182)||(23403724-23403842)
chr2 (64-209)||(1110208-1110353)
chr2 (85-170)||(8503822-8503907)
chr2 (85-209)||(42182899-42183023)
chr2 (87-193)||(9132265-9132371)
chr2 (85-219)||(14960646-14960780)
chr2 (69-203)||(35714488-35714621)
chr2 (64-209)||(37228508-37228654)
chr2 (83-151)||(15358712-15358780)
chr2 (92-210)||(23494278-23494390)
chr2 (112-209)||(28898110-28898207)
chr2 (101-144)||(37195269-37195312)
chr2 (93-147)||(2110069-2110123)
chr2 (64-141)||(17464722-17464797)
chr2 (110-144)||(19427318-19427352)
chr2 (86-140)||(21215368-21215422)
chr2 (149-210)||(8503783-8503843)
chr2 (134-218)||(1107039-1107123)
chr2 (162-218)||(40535113-40535169)
[»] chr5 (32 HSPs)
chr5 (64-224)||(30892135-30892295)
chr5 (82-219)||(17190607-17190744)
chr5 (64-219)||(42958466-42958621)
chr5 (54-191)||(18237162-18237299)
chr5 (72-219)||(5990517-5990664)
chr5 (45-154)||(32153756-32153865)
chr5 (64-204)||(28436416-28436556)
chr5 (69-154)||(41020241-41020326)
chr5 (69-186)||(26435305-26435421)
chr5 (83-146)||(10393791-10393854)
chr5 (63-154)||(34320923-34321014)
chr5 (91-219)||(1205614-1205742)
chr5 (85-209)||(42224637-42224761)
chr5 (82-191)||(40699505-40699615)
chr5 (76-140)||(2673672-2673736)
chr5 (85-193)||(32050333-32050441)
chr5 (85-147)||(6198601-6198663)
chr5 (112-209)||(4959288-4959385)
chr5 (147-208)||(5990628-5990689)
chr5 (82-211)||(34457662-34457790)
chr5 (44-207)||(16875270-16875433)
chr5 (85-209)||(26072113-26072237)
chr5 (51-150)||(41746137-41746234)
chr5 (64-106)||(1205672-1205714)
chr5 (131-189)||(10253174-10253232)
chr5 (132-218)||(40971546-40971632)
chr5 (63-108)||(18237161-18237206)
chr5 (67-108)||(22524395-22524436)
chr5 (179-224)||(25629648-25629693)
chr5 (164-219)||(3899985-3900038)
chr5 (63-143)||(27726822-27726902)
chr5 (82-169)||(38732428-38732513)
[»] chr6 (13 HSPs)
chr6 (64-219)||(7447564-7447718)
chr6 (64-210)||(32439504-32439650)
chr6 (82-209)||(17221519-17221646)
chr6 (63-209)||(30479870-30480017)
chr6 (69-153)||(28030642-28030726)
chr6 (112-218)||(19090288-19090394)
chr6 (85-209)||(35128769-35128893)
chr6 (147-210)||(32439485-32439548)
chr6 (95-209)||(3928945-3929059)
chr6 (112-162)||(31025237-31025287)
chr6 (112-193)||(4595768-4595849)
chr6 (160-209)||(10060983-10061032)
chr6 (176-224)||(6861414-6861462)
[»] chr7 (35 HSPs)
chr7 (64-209)||(47822007-47822152)
chr7 (69-219)||(36738485-36738640)
chr7 (51-190)||(557404-557543)
chr7 (85-224)||(42815604-42815743)
chr7 (85-224)||(41873429-41873568)
chr7 (83-193)||(45508521-45508631)
chr7 (44-160)||(39237668-39237784)
chr7 (64-149)||(43930028-43930112)
chr7 (82-193)||(29310446-29310557)
chr7 (71-189)||(17878715-17878833)
chr7 (93-207)||(48745238-48745352)
chr7 (103-223)||(16082817-16082937)
chr7 (77-193)||(46947787-46947901)
chr7 (85-219)||(25980749-25980883)
chr7 (158-208)||(47821990-47822040)
chr7 (72-169)||(32377306-32377402)
chr7 (147-208)||(43930068-43930129)
chr7 (83-164)||(3399039-3399124)
chr7 (85-209)||(13919790-13919914)
chr7 (49-169)||(25695892-25696012)
chr7 (112-209)||(22786161-22786258)
chr7 (85-173)||(49160292-49160380)
chr7 (64-195)||(26703465-26703596)
chr7 (71-137)||(32000434-32000501)
chr7 (85-207)||(19494385-19494507)
chr7 (45-101)||(22159034-22159090)
chr7 (45-101)||(22217742-22217798)
chr7 (82-144)||(46336044-46336107)
chr7 (112-209)||(17354600-17354697)
chr7 (165-210)||(22155936-22155981)
chr7 (165-210)||(22211851-22211896)
chr7 (158-210)||(2520642-2520694)
chr7 (72-108)||(18040326-18040362)
chr7 (175-219)||(22606680-22606724)
chr7 (64-108)||(36738568-36738612)
[»] chr3 (30 HSPs)
chr3 (64-219)||(54186927-54187082)
chr3 (64-212)||(13639430-13639578)
chr3 (72-219)||(48543141-48543288)
chr3 (82-219)||(20909291-20909428)
chr3 (42-219)||(50320419-50320595)
chr3 (64-221)||(29235675-29235834)
chr3 (64-186)||(38602836-38602958)
chr3 (43-190)||(46893373-46893518)
chr3 (45-169)||(28215775-28215899)
chr3 (64-183)||(42780698-42780817)
chr3 (83-218)||(1717764-1717899)
chr3 (112-219)||(54140966-54141073)
chr3 (64-209)||(27243055-27243200)
chr3 (121-218)||(37600212-37600309)
chr3 (116-189)||(54140813-54140886)
chr3 (142-210)||(13639411-13639479)
chr3 (100-167)||(26223190-26223257)
chr3 (147-210)||(48543252-48543315)
chr3 (158-208)||(29235658-29235708)
chr3 (159-208)||(54187050-54187099)
chr3 (114-202)||(86916-87004)
chr3 (147-207)||(38602820-38602880)
chr3 (121-209)||(46237128-46237216)
chr3 (63-106)||(3770543-3770586)
chr3 (158-209)||(24748917-24748968)
chr3 (85-146)||(357833-357894)
chr3 (133-169)||(28215351-28215387)
chr3 (43-118)||(45800722-45800795)
chr3 (71-151)||(46156689-46156769)
chr3 (117-193)||(46575974-46576050)
[»] scaffold0922 (1 HSPs)
scaffold0922 (82-162)||(711-791)
[»] scaffold0147 (1 HSPs)
scaffold0147 (64-154)||(28361-28451)
[»] scaffold0294 (1 HSPs)
scaffold0294 (93-219)||(17925-18050)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 6580794 - 6581118
Alignment:
Q  1 tgcttttgtccttcctggtctctgtaactcttgttttctaggttgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattc 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6580794 tgcttttgtccttcctggtctctgtcactcttgttttttaggttgaggagtgctatggacagtctctttctaacattcaccctcttattgggtgaaattc 6580893  T
Q  101 atgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaa 200  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6580894 atgtgggtaccacacattggaaatg-atcccacataaagtggtgagacccacatgagtttcacccaatagaagggtgagtgttagagagagtgctagaaa 6580992  T
Q  201 gagagtgttcttaacatttttctttttaggtttacttgaaagagttgaagttgtggt-ccttgtgtctctttccttaaaaaatcttcgatgtgggttctt 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  6580993 gagagtgttcttaacatttctctttttaggtttacttgaaagagttgaagttgtggtcccttgtatctctttccttaaaaaatcttcgatgtgggttctt 6581092  T
Q  300 ttagacatctactatatatgcttcat 325  Q
    ||| ||||||| ||||||||||||||    
T  6581093 ttatacatctattatatatgcttcat 6581118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 33440657 - 33440530
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  33440657 ctctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 33440558  T
Q  164 ccaatagaagggtgagtgttagagagag 191  Q
    | ||||| || |||||||||||| ||||    
T  33440557 ctaataggagagtgagtgttagaaagag 33440530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 28700581 - 28700736
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| |||||||||||| ||||| |||||||||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||    
T  28700581 ctctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgagactcacatgagtttcac 28700680  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
     ||||||||| |||||||||| |||| ||| |||||||| ||||||| || |||||    
T  28700681 tcaatagaagagtgagtgttaaagagtgtgatagaaagaaagtgttcatagcattt 28700736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 30085531 - 30085370
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| | || ||||||||| |||||||||||||| ||  ||||  ||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  30085531 ctctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttcac 30085432  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatttttcttt 225  Q
    ||||||  | ||||||| ||||||||| ||||||||| | ||||||| || ||||| |||||    
T  30085431 ccaataagatggtgagtattagagagaatgctagaaaaatagtgttcctagcatttctcttt 30085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 45058057 - 45057925
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    ||||||| |||| |||||||||| ||||| | ||||| ||  ||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||    
T  45058057 tctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccacataagtttcacccaat 45057958  T
Q  169 agaagggtgagtgttagagagagtgctagaaag 201  Q
    || || |||||| || ||||||||| |||||||    
T  45057957 aggagagtgagttttggagagagtgttagaaag 45057925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 16896336 - 16896414
Alignment:
Q  129 cccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtg 207  Q
    |||||||||||||||||||||||||| ||||||||| |||||||   ||||||||||||||||||||||||||||||||    
T  16896336 cccacataaagtggtgagacccacatgagtttcaccaaatagaaaaatgagtgttagagagagtgctagaaagagagtg 16896414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 1311593 - 1311488
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||||||||||| ||||  ||||||| ||||| || |||||||||  ||||| ||| |||||||||||||||||| ||||||||||| |||  |||||||    
T  1311593 ctctttctaacactcacattcttatttggtgagatccatgtgggtttcacactttggaaatggatcccacataaaatggtgagacccgcatgggtttcac 1311494  T
Q  164 ccaata 169  Q
    ||||||    
T  1311493 ccaata 1311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 33133476 - 33133564
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatag 170  Q
    |||||||||| ||||||||||||  ||||||||| ||| |||||| ||| ||||||||||||||| ||||||| |||||||| ||||||    
T  33133476 ctcttattggatgaaattcatgtaagtaccacactttggaaatgggtccgacataaagtggtgaggcccacatgagtttcacgcaatag 33133564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 13990496 - 13990601
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    |||||||| ||||||| | |||| ||  |||||  |||||||| | ||| ||||||||||||||||||||||| ||||||||||||||  || ||| |||    
T  13990496 ctcttatttggtgaaacttatgtaggatccacaatttgaaaataggtcctacataaagtggtgagacccacatgagtttcacccaataagagagtgggtg 13990595  T
Q  182 ttagag 187  Q
    ||||||    
T  13990596 ttagag 13990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 34434946 - 34435063
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    |||||||||||| |||||||||| |||||   ||| | || |||||| ||| ||||| |||||| |||||| ||||||| ||||||  ||||||||||||    
T  34434946 tctaacattcactctcttattggatgaaacctatgcgagtcccacaccttggaaatgcatcccatataaagcggtgagatccacatgggtttcacccaat 34435045  T
Q  169 agaagggtgagtgttaga 186  Q
    | ||| ||| ||||||||    
T  34435046 aaaagagtgggtgttaga 34435063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 35188506 - 35188402
Alignment:
Q  65 tctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacc 164  Q
    ||||||||||| |||| ||||||| |||||||||| ||||||||  ||||| ||| |||| | |||||| |||||||||| || ||||||   |||||||    
T  35188506 tctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactttggaaataggtcccacgtaaagtggtgggatccacatggctttcacc 35188407  T
Q  165 caata 169  Q
    |||||    
T  35188406 caata 35188402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 12212155 - 12212233
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 147  Q
    |||||||||||| || || |||||||||||  |||||||| | |||| ||| |||||| ||||||||||||||||||||    
T  12212155 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgaga 12212233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 12456583 - 12456661
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 147  Q
    |||||||||||| || || |||||||||||  |||||||| | |||| ||| |||||| ||||||||||||||||||||    
T  12456583 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgaga 12456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 35689587 - 35689481
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttct 211  Q
    |||| ||||||||||| | |||||||||||||| |||  ||||   ||||| |||||| ||  ||||||| |||||||||||||  ||||||||||||||    
T  35689587 acactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaagagagtgttct 35689488  T
Q  212 taacatt 218  Q
    || ||||    
T  35689487 taccatt 35689481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 14022030 - 14022111
Alignment:
Q  72 aacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccaca 153  Q
    ||||||||| |||||||| ||||||||| |||| ||| ||| || ||| ||| |||||||||||||| ||| ||||||||||    
T  14022030 aacattcactctcttattcggtgaaattaatgtaggtcccaaactttggaaacggatcccacataaactggcgagacccaca 14022111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 28700625 - 28700564
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||||| ||| ||||||||  || ||||||||||||||||||| ||||||||||||||    
T  28700625 acccacataaatttaacccaataagagagtgagtgttagagagagtgttagaaagagagtgt 28700564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 36927056 - 36927102
Alignment:
Q  95 aaattcatgtgggtaccacacattgaaaatggatcccacataaagtg 141  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  36927056 aaattcatgtggatacaacacatttaaaatggatcccacataaagtg 36927102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 31024183 - 31024224
Alignment:
Q  121 aaatggatcccacataaagtggtgagacccacataagtttca 162  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  31024183 aaatgaatcccacataaagtggtgagacccacatgagtttca 31024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 16895274 - 16895334
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatc 129  Q
    ||||||| |||| |||||||||  | |||||||||||| ||||||| ||||||||||||||    
T  16895274 tctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatc 16895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 31703882 - 31703822
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 145  Q
    ||||||| | ||||| |||||| || ||||| ||| |||||||||||||||||||||||||    
T  31703882 ttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 9905821 - 9905906
Alignment:
Q  46 aggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatccca 132  Q
    ||||||| |||||| | |||||||||||||| ||| || ||| ||| ||||||  |||||| |||||| ||||| ||||||||||||    
T  9905821 aggagtggtatggagactctctttctaacatccactcttttactggatgaaatcaatgtggctaccac-cattggaaatggatccca 9905906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 11781573 - 11781515
Alignment:
Q  111 cacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaata 169  Q
    ||||||||  |||||||||  | |||||||||||||||||||||| | |||||||||||    
T  11781573 cacacatttgaaatggatcatatataaagtggtgagacccacataggcttcacccaata 11781515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 902419 - 902488
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacat 154  Q
    ||||||||||||||  |||||| | | || | ||| |||||| ||||||||||||||||| |||||||||    
T  902419 ttattgggtgaaatcaatgtggatcctacgctttggaaatgggtcccacataaagtggtgggacccacat 902488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 1205934 - 1205837
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||| ||| |||| || |||| |||||||||||||||  |||| | ||| ||| |||| ||| ||||||| || ||||||||||  ||||||||||||    
T  1205934 acactttggaaatagaacccatataaagtggtgagacatacattaattttacctaataaaagagtgagtgctaaagagagtgctcaaaagagagtgtt 1205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 33440613 - 33440674
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||| | ||||||||||||  || |||| |||||||||||||| || |||||||||||    
T  33440613 acccacatgactttcacccaataagagagtgaatgttagagagagtgttataaagagagtgt 33440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 30085518 - 30085558
Alignment:
Q  178 agtgttagagagagtgctagaaagagagtgttcttaacatt 218  Q
    |||||||||||||||| |||||||||||||| | |||||||    
T  30085518 agtgttagagagagtgttagaaagagagtgtccataacatt 30085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 33440506 - 33440574
Alignment:
Q  40 aggttgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggt 108  Q
    |||||||| | ||||| | | ||||||||||||||| |||| ||| |||| ||||||| ||||||||||    
T  33440506 aggttgagaaatgctaggaatattctctttctaacactcactctcctattaggtgaaactcatgtgggt 33440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 45058013 - 45058061
Alignment:
Q  142 gtgagacccacataagtttcacccaatagaagggtgagtgttagagaga 190  Q
    ||||||| ||||||||||||| ||||||  || ||||||||||||||||    
T  45058013 gtgagactcacataagtttcaaccaataagagagtgagtgttagagaga 45058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 37306577 - 37306399
Alignment:
Q  46 aggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 145  Q
    |||||||||||||| | | ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  37306577 aggagtgctatggacactttctttctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtga 37306478  T
Q  146 gacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  37306477 gacccacatgagtttcacccaatataagagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt 37306399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 43480270 - 43480432
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| ||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43480270 ctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttcac 43480369  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatttttctttt 226  Q
    ||||||| || |||| || ||| |||||||||||||||||||||||| || ||||| ||||||    
T  43480370 ccaataggagagtgactgctagggagagtgctagaaagagagtgttcctagcatttctctttt 43480432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 51475312 - 51475162
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    |||||||  ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  51475312 tctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaat 51475213  T
Q  169 agaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |  ||||||||||||||||||||||||||||||||||||||| || |||||    
T  51475212 aagagggtgagtgttagagagagtgctagaaagagagtgttcctagcattt 51475162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 31699624 - 31699477
Alignment:
Q  72 aacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaataga 171  Q
    |||| |||| |||||||||||||||||||||||||||| || |||||| ||||||| |||||||||| |||||||||||||||  |||| | |||||||     
T  31699624 aacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 31699525  T
Q  172 agggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||    
T  31699524 agagtgagtgttagagagagtgctagaaagagagtgttcttagcattt 31699477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 6540251 - 6540411
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||||| |||||| ||| |||||||||||||||||  |||||| || || |||||| |||||||||| ||| |||||||||||| |||||||||||||||    
T  6540251 ctctttgtaacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagatccacataagtttcac 6540350  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    ||||||| ||  |||||||||||||||||| |||||||||||||||| || ||||| ||||    
T  6540351 ccaataggagaatgagtgttagagagagtgatagaaagagagtgttcctaccatttctctt 6540411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 30111795 - 30111955
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| ||||  ||||||||| ||||| ||||||||||||||||||||| || || ||||||||||||||||||||| |||||| ||||||||    
T  30111795 ctctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacattggaattg-atcccacataaagtggtgagatccacatgagtttcac 30111893  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatttttcttt 225  Q
    ||||||  || ||||||||| |||||| || |||||||||| ||||| || ||||| |||||    
T  30111894 ccaatatgagagtgagtgtttgagagaatgttagaaagagaatgttcatatcatttctcttt 30111955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 50251626 - 50251505
Alignment:
Q  44 tgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggt 143  Q
    |||||||||||||| | | ||||||||||||| ||||  | |||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||    
T  50251626 tgaggagtgctatgaacactctctttctaacactcacttttttattgggtgaaattcatgtggataccacacgttgaaaatggatcccacgtaaaatggt 50251527  T
Q  144 gagacccacataagtttcaccc 165  Q
    ||||| ||||| ||||||||||    
T  50251526 gagactcacatgagtttcaccc 50251505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 39810467 - 39810581
Alignment:
Q  94 gaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtg 193  Q
    ||||| |||||||||| || |||||| ||||  |||||||||||| ||||| ||| ||| | | ||| |||||||| ||| ||| |||||||||||||||    
T  39810467 gaaatgcatgtgggtaacatacattggaaatatatcccacataaa-tggtgggactcacgtgaattttacccaataaaagagtgggtgttagagagagtg 39810565  T
Q  194 ctagaaagagagtgtt 209  Q
    ||||||||||||||||    
T  39810566 ctagaaagagagtgtt 39810581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 22037030 - 22036957
Alignment:
Q  65 tctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaa 138  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||| | ||||||||||    
T  22037030 tctttttaacattcaccctcttattggatgaaatccatgtgggtaacacactttgaaaatgaaacccacataaa 22036957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 24414473 - 24414584
Alignment:
Q  110 ccacacattgaaaat--ggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtg 207  Q
    |||||||||||||||  |||| ||||||||||||||||||| || |||| ||| ||| | |||||  |||| | ||||||| ||||||||||| ||||||    
T  24414473 ccacacattgaaaatatggattccacataaagtggtgagactcatataaattttaccgagtagaaaagtgactcttagagaaagtgctagaaatagagtg 24414572  T
Q  208 ttcttaacattt 219  Q
    ||| ||||||||    
T  24414573 ttcgtaacattt 24414584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 16650587 - 16650481
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||| ||||||| ||||||| |||| |||| |||||||||||||||||||  ||| |||||||| |||| ||| |||||||| ||  |||| |||||    
T  16650587 ttattggatgaaatttatgtgggcaccaaacatcgaaaatggatcccacataagttggcgagacccaaataaatttgacccaataaaaaagtgaatgtta 16650488  T
Q  185 gagagag 191  Q
    || ||||    
T  16650487 gaaagag 16650481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 51823131 - 51823184
Alignment:
Q  109 accacacattgaaaatggatcccacataaagtggtgagacccacataagtttca 162  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| |||||||    
T  51823131 accacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttca 51823184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 21710652 - 21710554
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||| ||||||||| ||||||||| |||| ||||||||| || | ||||||||||| | |||| ||||| |||||||| ||||| ||| ||||||||||    
T  21710652 ttatttggtgaaatttatgtgggtatcacaaattgaaaataga-ctcacataaagtgataagactcacatgagtttcacacaataaaagagtgagtgtta 21710554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 42862493 - 42862600
Alignment:
Q  111 cacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    ||||| ||||||||||| |||||||||||||||| |||  ||||   |||||||||||| ||  ||||||| |||||| ||||||  ||||||||||||     
T  42862493 cacactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaaaagtgagtgctagagaaagtgctcaaaagagagtgtta 42862592  T
Q  211 ttaacatt 218  Q
    ||| ||||    
T  42862593 ttagcatt 42862600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 39401395 - 39401321
Alignment:
Q  135 taaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    ||||||||||||| |||| | |||||||| ||||||||| |||| | ||||||| | ||||| ||||||||||||    
T  39401395 taaagtggtgagatccacgtgagtttcactcaatagaagagtgaatattagagaaaatgctataaagagagtgtt 39401321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 21776594 - 21776508
Alignment:
Q  131 cacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||||||||||||||||| ||||| | |||||||||||| ||| ||| || ||||||| |   ||| ||| ||||||||||||||||||    
T  21776594 cacataaagtggtgagactcacatgaatttcacccaataaaagagtgggtattagagata--actaaaaatagagtgttcttaacattt 21776508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 31699588 - 31699649
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||| | ||||||||||||  || ||||||||| ||||||||| ||||||||||||||    
T  31699588 acccacatgaatttcacccaataagagagtgagtgttggagagagtgttagaaagagagtgt 31699649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 37422929 - 37423058
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||| | |||| || ||||||| | ||| |||||||||||| | |  |||||||||||||| ||||||||| ||||| | ||| |  ||||||     
T  37422929 ctctctctaatactcactcttttattggataaaaatcatgtgggtactatattttgaaaatggatccgacataaagtagtgagtctcacttgtgtttcat 37423028  T
Q  164 ccaatagaagggtgagtgttagagagagtg 193  Q
    |||||| ||  |||||||||||||| ||||    
T  37423029 ccaataaaaaagtgagtgttagagatagtg 37423058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 53514503 - 53514572
Alignment:
Q  134 ataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagag 203  Q
    ||||||||||||||| |||||| ||||||||||||| ||| | |||| ||||||||| || | |||||||    
T  53514503 ataaagtggtgagactcacatatgtttcacccaataaaagagcgagtattagagagaatgttggaaagag 53514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 41095224 - 41095300
Alignment:
Q  143 tgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||| |||||||  ||||| |||||||| || ||| ||||| ||||||||| |||||||||||||||| || |||||    
T  41095224 tgagtcccacatgggtttcccccaataggagagtgggtgtttgagagagtggtagaaagagagtgttcctagcattt 41095300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 48129793 - 48129881
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaag 173  Q
    ||||||| ||||||||||||| ||| ||||| || |||||||||| ||  |||| |||||| ||  ||||| |||| ||||||||||||    
T  48129793 ttattggatgaaattcatgtgagtatcacactttaaaaatggatctcatgtaaaatggtgacacttacatatgttttacccaatagaag 48129881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 51206165 - 51206216
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||||||||||| ||| ||||||| |||||||||||||  ||||||||||||    
T  51206165 tttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgtt 51206216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 9051074 - 9051004
Alignment:
Q  93 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    ||||||||||||| |||| |||  ||  ||||||||||||| |||| |||||||||||| |||| ||||||    
T  9051074 tgaaattcatgtgagtactacattttagaaatggatcccacgtaaattggtgagacccatataaatttcac 9051004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 1869403 - 1869362
Alignment:
Q  121 aaatggatcccacataaagtggtgagacccacataagtttca 162  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||    
T  1869403 aaatgtatcccacgtaaagtgatgagacccacataagtttca 1869362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 27789954 - 27789999
Alignment:
Q  104 tgggtaccacacattgaaaatggatcccacataaagtggtgagacc 149  Q
    ||||||||||  |||| |||||||| ||||||||||||||||||||    
T  27789954 tgggtaccaccaattgtaaatggataccacataaagtggtgagacc 27789999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 50815358 - 50815443
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacat 154  Q
    |||||||||||  |||||||  | ||||| ||||| ||||  ||||| |||||||| |||| ||| |||||||||||||| |||||    
T  50815358 tctaacattcattctcttatgagatgaaactcatgagggtctcacactttgaaaatagatctcacctaaagtggtgagactcacat 50815443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 2834202 - 2834274
Alignment:
Q  121 aaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtg 193  Q
    |||||||||||||||||||| | ||||||  ||| |||||||| ||||| | | |||||||||| | ||||||    
T  2834202 aaatggatcccacataaagttgcgagacctgcatgagtttcactcaataaacgagtgagtgttataaagagtg 2834274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 6011580 - 6011624
Alignment:
Q  175 gtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||||||||||||||| ||||| |||| ||||||||||| |||||    
T  6011580 gtgagtgttagagagactgctaaaaagggagtgttcttagcattt 6011624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 16650565 - 16650625
Alignment:
Q  148 cccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    ||||||||| ||||| |||||| ||  || |||||||| ||||||| ||||||||||||||    
T  16650565 cccacataaatttcatccaataaaaaagttagtgttagggagagtgttagaaagagagtgt 16650625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 19447233 - 19447181
Alignment:
Q  117 ttgaaaatggatcccacataaagtggtgagacccacataagtttcacccaata 169  Q
    ||||||||||| |||||||||||||||| |||  ||||  |||||||||||||    
T  19447233 ttgaaaatggaacccacataaagtggtgggacatacattggtttcacccaata 19447181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 26369056 - 26369148
Alignment:
Q  77 tcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaata 169  Q
    |||| |||||||| ||||||| || |||||||  ||| | ||  ||||| | ||||||||||||| |||||||||||| | |||||| |||||    
T  26369056 tcactctcttattcggtgaaactcgtgtgggtctcacgctttagaaatgaaacccacataaagtgatgagacccacatgactttcactcaata 26369148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 24886065 - 24886220
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||    
T  24886065 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcac 24886164  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  24886165 ccaataggagagtgagtgttagagagagtgctagaaagagagtgttcttagcattt 24886220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 29068127 - 29068261
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    |||||||||||||| | |||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||| ||||||| || ||||||||||    
T  29068127 ttattgggtgaaatacgtgtgggtaccacacattggaaattgatcccacataaaatggtgagacccacatgagtttcatccaataggagagtgagtgtta 29068226  T
Q  185 gagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||||||||||||||||||||||||| || |||||    
T  29068227 gagagagtgctagaaagagagtgttcctagcattt 29068261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 19078939 - 19079059
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19078939 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19079038  T
Q  164 ccaatagaagggtgagtgtta 184  Q
    ||||||| || ||||||||||    
T  19079039 ccaataggagagtgagtgtta 19079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 19126827 - 19126947
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19126827 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19126926  T
Q  164 ccaatagaagggtgagtgtta 184  Q
    ||||||| || ||||||||||    
T  19126927 ccaataggagagtgagtgtta 19126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 931990 - 932113
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtg 144  Q
    ||||||||||||||| |  |||||| ||||| || | |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  931990 gaggagtgctatggaca--ctctttgtaacactcgctctctaattgggtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtg 932087  T
Q  145 agacccacataagtttcacccaatag 170  Q
    |||||||| ||||||| ||| |||||    
T  932088 agacccacgtaagttttaccaaatag 932113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 11709748 - 11709656
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaag 139  Q
    ||||||||||||||| | |||||  |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  11709748 gaggagtgctatggacactctct--ctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 16173054 - 16173160
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    ||||||||||||||||| ||||||| |||| ||||||| ||||| |||||||||| || ||||||| ||||||  |||||||||||||| || |||||||    
T  16173054 ctcttattgggtgaaatccatgtgg-taccccacattggaaatgaatcccacatatagaggtgagatccacatgggtttcacccaataggagagtgagtg 16173152  T
Q  182 ttagagag 189  Q
    ||||||||    
T  16173153 ttagagag 16173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 31602087 - 31602218
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||  ||||| ||| ||||||||||||| ||||||||||||||||||||  ||||||     
T  31602087 ctctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcat 31602186  T
Q  164 ccaatagaagggtgagtgttagagagagtgct 195  Q
    ||||||  || |||||||||| | ||||||||    
T  31602187 ccaataagagagtgagtgttaaaaagagtgct 31602218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 43275909 - 43275787
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    |||||||||| ||| ||||||||||||| |  ||  |||||||||||||||||| | ||||||||||||| | |||||| ||||| ||  |||||||||     
T  43275909 ttattgggtggaatccatgtgggtaccagattttcgaaatggatcccacataaaatcgtgagacccacatgaatttcactcaataaaaaagtgagtgttg 43275810  T
Q  185 gagagagtgctagaaagagagtg 207  Q
    ||||||||||||||||| |||||    
T  43275809 gagagagtgctagaaagtgagtg 43275787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 14562666 - 14562603
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 145  Q
    ||||||||| |||||||| |||| |||||||||| ||| |||||||||||||||||||||||||    
T  14562666 ctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 17642398 - 17642506
Alignment:
Q  83 tcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgt 182  Q
    ||||||| | |||||| |||||||||||||||||||  |||||||||  |||||||||| |||||  || |||||||||| ||||||| || ||||||||    
T  17642398 tcttattagctgaaatacatgtgggtaccacacattagaaatggatcatacataaagtgatgaga--catataagtttcatccaatagtagagtgagtgt 17642495  T
Q  183 tagagagagtg 193  Q
    || ||| ||||    
T  17642496 taaagatagtg 17642506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 11135894 - 11135749
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| |||| || |||| || ||||||||||||||  |||| ||  | |||| ||| ||||||| |||||||||||||||| |||  ||||   ||||||    
T  11135894 ctctctctagcactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtgggacatacattgatttcac 11135795  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||||| ||  ||||||| |||||||||||||  ||||||||||||    
T  11135794 ccaataaaatagtgagtgctagagagagtgctcaaaagagagtgtt 11135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 11430548 - 11430442
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttct 211  Q
    |||| ||| ||||||| |||||||||||||||| |||  ||||   |||||||||||| ||| ||||||| |||| ||||||||  |||||||||||| |    
T  11430548 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagaaagagtgctcaaaagagagtgttgt 11430449  T
Q  212 taacatt 218  Q
    || ||||    
T  11430448 tagcatt 11430442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 24886109 - 24886052
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagaga 204  Q
    |||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  24886109 acccacatgaatttcacccaataaaagagtgagtgttagagagagtgttagaaagaga 24886052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 41918102 - 41918005
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||| |||||||||||  ||||||||||||||| |||  ||||   |||||||||||| ||| ||||||| ||||||| |||||  ||||||||||||    
T  41918102 acactttgaaaatggaatccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagggtgctcaaaagagagtgtt 41918005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 52444524 - 52444448
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgag 146  Q
    |||||||||| | |||||||||||||||  | ||||||||||||||| ||  |||||||||||||| |||||||||||    
T  52444524 tctaacattccctctcttattgggtgaatct-atgtgggtaccacactttcgaaatggatcccacagaaagtggtgag 52444448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 4578619 - 4578727
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatgg-atcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagt 180  Q
    ||||| |||||||||||  |||||||| | |||| ||| |||||| | ||| |||||||||||| |||| ||||   |||||||||||| ||| ||||||    
T  4578619 ctctttttgggtgaaatcaatgtgggtcctacactttggaaatgggaccccgcataaagtggtgggacctacattgatttcacccaataaaagagtgagt 4578718  T
Q  181 gttagagag 189  Q
    |||||||||    
T  4578719 gttagagag 4578727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 32848656 - 32848762
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttct 211  Q
    |||| |||||||||||  ||||||||||||||| |||  |||    |||||||||||| ||| ||||||| ||||||||||| |  |||||||||||| |    
T  32848656 acactttgaaaatggaatccacataaagtggtgggacatacaatgatttcacccaataaaagagtgagtgctagagagagtgttcaaaagagagtgttgt 32848755  T
Q  212 taacatt 218  Q
    || ||||    
T  32848756 tagcatt 32848762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 43161199 - 43161297
Alignment:
Q  121 aaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||||| ||| ||||  ||||| |||||| | ||||||| | |||| ||| |||| |||| |||||| || |||||||||||||||| ||||||||    
T  43161199 aaatggatcacacgtaaaacggtgaaacccacgtgagtttcatcaaataaaagagtgaatgtttgagagaatgttagaaagagagtgttcctaacattt 43161297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 12876068 - 12876137
Alignment:
Q  123 atggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagt 192  Q
    ||||||||||||||||||||||||| |||||||| ||||| | |||| ||  | |||||||| |||||||    
T  12876068 atggatcccacataaagtggtgagatccacataaatttcatcaaataaaatagcgagtgttaaagagagt 12876137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 8050121 - 8050037
Alignment:
Q  67 tttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccca 151  Q
    |||| ||||||||| |||||||| ||||||||  || ||| ||||||||||   | |||||||| | ||||||||||||||||||    
T  8050121 tttcgaacattcactctcttattaggtgaaatcaatatggataccacacatgagacatggatccgatataaagtggtgagaccca 8050037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 41095655 - 41095779
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  |||| ||  | |||| ||||||||||| |||||| | |||| || |||  ||||   |||||||||||| | | ||||||| ||    
T  41095655 ttattgggtgaaatcaatgtaggacctacactttgaaaatggaacccacacagagtgatgggacatacattgatttcacccaataaatgagtgagtgcta 41095754  T
Q  185 gagagagtgctagaaagagagtgtt 209  Q
    |||||||||||  ||||||||||||    
T  41095755 gagagagtgctcaaaagagagtgtt 41095779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 19078972 - 19078922
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    ||||||||||||  || ||||||||||||||||||| |||||| |||||||    
T  19078972 tttcacccaataagagagtgagtgttagagagagtgttagaaacagagtgt 19078922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 19126860 - 19126810
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    ||||||||||||  || ||||||||||||||||||| |||||| |||||||    
T  19126860 tttcacccaataagagagtgagtgttagagagagtgttagaaacagagtgt 19126810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 29068139 - 29068089
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||||||| ||  |||||||||||||| |||| ||||||||||||||    
T  29068139 tttcacccaataaaatagtgagtgttagagaaagtgttagaaagagagtgt 29068089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 48863761 - 48863795
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaat 98  Q
    |||||||||||| ||||||||||||||||||||||    
T  48863761 ctctttctaacactcaccctcttattgggtgaaat 48863795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 4853573 - 4853649
Alignment:
Q  142 gtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||||||||| ||||||| || |||||||  || |||||||| |||| |||| ||||||||||||  ||||||||    
T  4853573 gtgagacccacatgagtttcatcccatagaagaatg-gtgttagaaagagcgctataaagagagtgtttctaacattt 4853649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 15449946 - 15449994
Alignment:
Q  116 attgaaaatggatcccacataaagtggtgagacccacataagtttcacc 164  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| |||||||    
T  15449946 attgaaaatgggtcccgcataaagtggtgagatccacgtaattttcacc 15449994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 27464709 - 27464784
Alignment:
Q  117 ttgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtg 193  Q
    |||||||||||| ||||||||||| ||| |||  | || ||||||| |||||| | | |||||||||||||||||||    
T  27464709 ttgaaaatggattccacataaagtagtgggact-atatgagtttcaaccaataaatgagtgagtgttagagagagtg 27464784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 48863835 - 48863759
Alignment:
Q  117 ttgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtg 193  Q
    |||| |||||||||| |||||| ||||| ||||||  |   ||||||||||||  ||||||||||||||| ||||||    
T  48863835 ttgagaatggatcccgcataaattggtgggacccatgtgtatttcacccaataagagggtgagtgttagaaagagtg 48863759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 5140110 - 5139963
Alignment:
Q  77 tcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggt 176  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| || ||    
T  5140110 tcactctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaataggagagt 5140011  T
Q  177 gagtgttagagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5140010 gagtgttagagagagtgctagaaagagagtgttcctagcatttctctt 5139963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 6951742 - 6951886
Alignment:
Q  82 ctcttattgggtgaaa-ttcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagt 180  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  6951742 ctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttcatccaataggaaggtgagt 6951841  T
Q  181 gttagagagagtgctagaaagagagtgttcttaacatttttcttt 225  Q
    |||| |||||||| |||||||| |||||| ||| ||||| |||||    
T  6951842 gttaaagagagtgttagaaagatagtgtttttagcatttctcttt 6951886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 864248 - 864107
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | |||| ||||| |  |||||| |||||    
T  864248 tctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagcgatgagccccacttgggtttcatccaat 864149  T
Q  169 agaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    ||||   | |||||||||||||||||||||||||||||||||    
T  864148 agaaaaataagtgttagagagagtgctagaaagagagtgttc 864107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 42635316 - 42635456
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtg 144  Q
    ||||||||||||||| | ||||||||||| |  |||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  42635316 gaggagtgctatggacactctctttctaatacccacttttttattgggtgaaattcatgtgggtaccacacattgaaaatggattccacataaagtgatg 42635415  T
Q  145 agacccacataagtttcacccaatagaagggtgagtgttag 185  Q
    |||||||||| ||||||| ||||||| | | ||||||||||    
T  42635416 agacccacatgagtttcatccaataggacgatgagtgttag 42635456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 7709779 - 7709928
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    ||||||| |||| || |||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||| ||    
T  7709779 tctaacactcactcttttattgggtgaattt-atgtgggtaccacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccctat 7709877  T
Q  169 agaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    || || |||||||||||||||| ||||| ||||||| ||||  ||||||||    
T  7709878 aggagagtgagtgttagagagattgctaaaaagagaatgtttctaacattt 7709928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 37285288 - 37285162
Alignment:
Q  44 tgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggt 143  Q
    |||||| |||||| || | ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |    
T  37285288 tgaggaatgctatagacactctctttctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgat 37285189  T
Q  144 gagacccacataagtttcacccaatag 170  Q
    ||||| || || ||||||||| |||||    
T  37285188 gagactcaaatgagtttcaccgaatag 37285162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 23403842 - 23403724
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||||||||||  |||| |||||| |||||||||| |||||||||||||||| ||| |||||| ||||| |||||| || ||||||||||| ||||||||    
T  23403842 ctctttctaaccctcactctcttactgggtgaaatccatgtgggtaccacactttggaaatgggtcccaaataaagcggcgagacccacatgagtttcac 23403743  T
Q  164 ccaatagaagggtgagtgt 182  Q
    ||||| | || ||||||||    
T  23403742 ccaattggagagtgagtgt 23403724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 1110353 - 1110208
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    ||||||||||||||||| || ||||||||||||||  |||| ||    | || ||| ||||||| |||||||||||||||| |||  ||||   ||||||    
T  1110353 ctctttctaacattcactcttttattgggtgaaatcaatgtaggacatatactttggaaatggaacccacataaagtggtgggacatacattgatttcac 1110254  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
     ||||| ||| |||||||||||||||| |||| |||||||||||||    
T  1110253 tcaataaaagagtgagtgttagagagaatgctcgaaagagagtgtt 1110208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 8503822 - 8503907
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatag 170  Q
    ||||||||||||||  |||||| |||| |||||| |||||| ||| ||||||||||||||||| |||||| ||||||| |||||||    
T  8503822 ttattgggtgaaatctatgtggataccgcacattaaaaatgaatctcacataaagtggtgagatccacatgagtttcatccaatag 8503907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 42183023 - 42182899
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  |||| ||  | |||| ||| ||||||| |||||||||||||||| |||  ||||   |||||||||||| ||| ||||||| ||    
T  42183023 ttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgcta 42182924  T
Q  185 gagagagtgctagaaagagagtgtt 209  Q
    |||||||||||  ||||||||||||    
T  42182923 gagagagtgctcaaaagagagtgtt 42182899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 9132371 - 9132265
Alignment:
Q  87 attgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttaga 186  Q
    ||||||||||||  ||||||||||||| | ||| |||| | | ||||||||| ||||||||||||| |  |||||||||||||  || ||||||||||||    
T  9132371 attgggtgaaatctatgtgggtaccactctttggaaattggttccacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttaga 9132272  T
Q  187 gagagtg 193  Q
     ||||||    
T  9132271 aagagtg 9132265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 14960780 - 14960646
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||| ||||||| |||||| ||| |||||||||||||||||| |||||||| | |||||||  | || |||||||||||||| ||    |||| |||    
T  14960780 ttattggatgaaatttatgtggatactacacattgaaaatggatctcacataaaatagtgagacttatatgagtttcacccaataaaaaaacgagtatta 14960681  T
Q  185 gagagagtgctagaaagagagtgttcttaacattt 219  Q
    || ||| ||||| |||||| || ||| ||||||||    
T  14960680 gaaagaatgctaaaaagagggtattcataacattt 14960646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 35714621 - 35714488
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    |||||||  ||| ||||| |||| |||||| |||||||||||||||| ||| |||||| || | ||||||||||||||||| ||||  |||||||  |||    
T  35714621 tctaacacccactctcttgttggatgaaatccatgtgggtaccacactttggaaatgg-tctcgcataaagtggtgagacctacatgggtttcactaaat 35714523  T
Q  169 agaagggtgagtgttagagagagtgctagaaagag 203  Q
    || || |||| |||| ||||||||| || ||||||    
T  35714522 aggagagtgaatgttggagagagtgttaaaaagag 35714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 37228654 - 37228508
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacat-aagtttca 162  Q
    ||||||||| || ||||  | ||||||||||||||  |||| ||  |  ||| ||||||| ||| |||||||||||||||| |||  |||| || |||||    
T  37228654 ctctttctagcactcacttttttattgggtgaaatcaatgtaggacctgcactttgaaaacggaacccacataaagtggtgggacatacattaattttca 37228555  T
Q  163 cccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    ||||||| ||| ||||||| |||||||||||||  ||||||||||||    
T  37228554 cccaataaaagagtgagtgctagagagagtgctcaaaagagagtgtt 37228508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 15358780 - 15358712
Alignment:
Q  83 tcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccca 151  Q
    |||||||| ||||||||||||||| ||| ||||  ||||||| ||||||||||||| | ||||||||||    
T  15358780 tcttattgtgtgaaattcatgtggatactacactatgaaaatagatcccacataaaatagtgagaccca 15358712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 23494390 - 23494278
Alignment:
Q  92 gtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagag 191  Q
    ||||||||||||||| || ||||| ||||||||| ||| |||||||| | ||||||||| ||| || |  |   |||| |   |||| ||||||||||||    
T  23494390 gtgaaattcatgtggatatcacactttgaaaatgaatctcacataaattagtgagacccgcatgagatgaa---aataaa---gtgaatgttagagagag 23494297  T
Q  192 tgctagaaagagagtgttc 210  Q
    |||||||||||||||||||    
T  23494296 tgctagaaagagagtgttc 23494278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 28898110 - 28898207
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||| ||| ||||| | |||||||||||||||| |||  ||||   |||||||||||| ||| ||||||| |||||||||||||  ||| ||||||||    
T  28898110 acactttggaaatgaaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaaaagagtgtt 28898207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 37195269 - 37195312
Alignment:
Q  101 atgtgggtaccacacattgaaaatggatcccacataaagtggtg 144  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||    
T  37195269 atgtgggtaccaaacattaaaaatggatctcacataaagtggtg 37195312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 2110123 - 2110069
Alignment:
Q  93 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 147  Q
    |||||||||| || ||| || ||||||||||| ||| ||||||||||||||||||    
T  2110123 tgaaattcatatgtgtatcatacattgaaaattgattccacataaagtggtgaga 2110069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 17464797 - 17464722
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtg 141  Q
    |||| |||||||||||  ||||| || ||||||||||||||  ||||||| | ||  |||||||||||||||||||||    
T  17464797 ctctctctaacattcattctcttgtttggtgaaattcatgt--gtaccacgctttataaatggatcccacataaagtg 17464722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 19427318 - 19427352
Alignment:
Q  110 ccacacattgaaaatggatcccacataaagtggtg 144  Q
    |||||| ||||||||||||||||||||||||||||    
T  19427318 ccacactttgaaaatggatcccacataaagtggtg 19427352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 21215368 - 21215422
Alignment:
Q  86 tattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagt 140  Q
    |||||||| ||||| |||||  | |||||| ||||||||||||||||||||||||    
T  21215368 tattgggtaaaattaatgtgaatcccacactttgaaaatggatcccacataaagt 21215422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 8503843 - 8503783
Alignment:
Q  149 ccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    |||||||  |||||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  8503843 ccacatagatttcacccaata-aagagtgagtgttatagagagggttagaaagagagtgttc 8503783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 1107123 - 1107039
Alignment:
Q  134 ataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatt 218  Q
    ||||||||||| |||  ||||   |||||||||||| ||| ||| ||| |||||||||||||  ||||||||||||  |||||||    
T  1107123 ataaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaagagagtgttgctaacatt 1107039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 40535113 - 40535169
Alignment:
Q  162 acccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatt 218  Q
    |||||||| ||| ||||||||||||||| ||||| |||||| |||||| ||| ||||    
T  40535113 acccaataaaagagtgagtgttagagagggtgctcgaaagatagtgttgttagcatt 40535169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 30892135 - 30892295
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||||||||||| |||| |||||||| |||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||| || || ||||||||    
T  30892135 ctctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  30892235 ccaataggagagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt 30892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 17190744 - 17190607
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    ||||| |||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||    
T  17190744 ctcttgttgggtgaaattcatgcgggtaccacacattagaaatggatcccacataaagtggtgagacccacataagtttcacctaataggaaagtgagtg 17190645  T
Q  182 ttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||||||||||||||||||||||||| || |||||    
T  17190644 ttagagagagtgctagaaagagagtgttcatagcattt 17190607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 42958466 - 42958621
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| ||||  | ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||     
T  42958466 ctctctctaacagtcacttttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttcat 42958565  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||| || |||||    
T  42958566 ccaatagaaaagtgagtgttagagtgagtgctagaaagagagtgttcctagcattt 42958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 18237299 - 18237162
Alignment:
Q  54 tatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccaca 153  Q
    |||||| | ||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  18237299 tatggacactctctttctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccaca 18237200  T
Q  154 taagtttcacccaatagaagggtgagtgttagagagag 191  Q
    | | |||||||||| || | ||||||||||||| ||||    
T  18237199 tgaatttcacccaagaggaaggtgagtgttagaaagag 18237162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 5990664 - 5990517
Alignment:
Q  72 aacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaataga 171  Q
    |||| |||| || |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||   ||| | ||||||      
T  5990664 aacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgagacccacatgtatttaatccaatatg 5990565  T
Q  172 agggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    || |||||||||||||||||||||| |||||||| ||||||| |||||    
T  5990564 agagtgagtgttagagagagtgctaaaaagagagcgttcttagcattt 5990517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 32153865 - 32153756
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtg 144  Q
    |||||||||||||   | ||||||||||||| |||| ||||||||||||||||  ||||||| | |||||| ||| ||||||||||||||||||||||||    
T  32153865 gaggagtgctatgtgcactctctttctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtg 32153766  T
Q  145 agacccacat 154  Q
    ||||||||||    
T  32153765 agacccacat 32153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 204
Target Start/End: Complemental strand, 28436556 - 28436416
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||  |||||||| ||  |||||||||||||| | |||  ||||||||    
T  28436556 ctctttctaacattcactctctaattgggtgaaattcatgtggttaccacacttttgaaatggattccgtataaagtggtgagatctacacgagtttcac 28436457  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagaga 204  Q
    | |||   || |||||||||||||| ||||| | |||||||    
T  28436456 cgaatgagagagtgagtgttagagaaagtgcaataaagaga 28436416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 41020326 - 41020241
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacat 154  Q
    |||||||  ||| |||||||||||||||||  |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  41020326 tctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacat 41020241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 26435305 - 26435421
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaat 168  Q
    ||||| ||||||  ||||||||| ||||||||||||||| ||| ||| ||| |||  | || |||||||||||||||||||||| ||| |||||||||||    
T  26435305 tctaaaattcactttcttattggatgaaattcatgtgggcaccgcactttggaaagag-tctcacataaagtggtgagacccacgtaaatttcacccaat 26435403  T
Q  169 agaagggtgagtgttaga 186  Q
    || || ||||||||||||    
T  26435404 aggagagtgagtgttaga 26435421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 10393854 - 10393791
Alignment:
Q  83 tcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgag 146  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  10393854 tcttattgggtgaaattcatgtgggtactacacattgaaaataaatcccacataaagtagtgag 10393791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 34321014 - 34320923
Alignment:
Q  63 tctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacat 154  Q
    ||||||| ||||| |||  ||||| ||||||||||| ||||||| ||||| || |||||||| ||||||||||||||||||||||| |||||    
T  34321014 tctctttttaacactcattctcttgttgggtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacat 34320923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 1205614 - 1205742
Alignment:
Q  91 ggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagaga 190  Q
    |||||||||| |||||||| || ||||| ||||||||| ||| || || |||||| | |||||| | |||||||||||| ||| || | ||||||| |||    
T  1205614 ggtgaaattcttgtgggtagcatacattaaaaatggattccaaatgaactggtgataaccacatgaatttcacccaataaaagagtaaatgttagaaaga 1205713  T
Q  191 gtgctagaaagagagtgttcttaacattt 219  Q
    |||||| ||||| | ||||| ||||||||    
T  1205714 gtgctaaaaagaaaatgttcataacattt 1205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 42224637 - 42224761
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  |||| ||  | |||| ||| ||||||| |||||||||||||||| |||  ||||   ||||||| |||| ||| ||||||| ||    
T  42224637 ttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtgggacatacattgatttcacctaataaaagagtgagtgcta 42224736  T
Q  185 gagagagtgctagaaagagagtgtt 209  Q
    |||||||||||  ||||||||||||    
T  42224737 gagagagtgctcaaaagagagtgtt 42224761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 40699615 - 40699505
Alignment:
Q  82 ctcttattggg-tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagt 180  Q
    ||||||||||| |||||  |||||||||  || || ||| |||||||||||| ||||||| |||||||||||||  |||||||||||||  |  ||||||    
T  40699615 ctcttattggggtgaaacccatgtgggtctcatactttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaaagtgagt 40699516  T
Q  181 gttagagagag 191  Q
    |||||| ||||    
T  40699515 gttagaaagag 40699505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 2673736 - 2673672
Alignment:
Q  76 ttcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagt 140  Q
    ||||| ||||||||| |||||||||| |||| ||||||||||||||||||  | |||||||||||    
T  2673736 ttcactctcttattgtgtgaaattcacgtggataccacacattgaaaatgacttccacataaagt 2673672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 32050441 - 32050333
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  ||||  || |||||| ||||||||||| ||||||||||||| ||||||  | || | |||||||||||| |||  ||| || ||    
T  32050441 ttattgggtgaaatcaatgtatgttccacactttgaaaatggaacccacataaagtgatgagacatatattaatttcacccaataaaagaatgaatgcta 32050342  T
Q  185 gagagagtg 193  Q
    |||||||||    
T  32050341 gagagagtg 32050333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 6198663 - 6198601
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 147  Q
    ||||||||||||||  |||||||| |||||| |||||||||| | ||||||||||| ||||||    
T  6198663 ttattgggtgaaatcgatgtgggtcccacactttgaaaatgggttccacataaagtcgtgaga 6198601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 4959385 - 4959288
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||| ||||||||| | |||||||||| || ||||||  ||||   |||||||||||| ||| ||| || ||||||||||||||  ||||||||||||    
T  4959385 acactttgaaaatgtaacccacataaaatgatgagacatacattgatttcacccaataaaagagtgggtattagagagagtgctcaaaagagagtgtt 4959288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 5990628 - 5990689
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||| | |||||||||||| ||| ||||||||| |||| |||| ||||||||||||||    
T  5990628 acccacatgaatttcacccaataaaagagtgagtgttggagaaagtgttagaaagagagtgt 5990689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 34457662 - 34457790
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    ||||| ||| || ||||| ||||||||| | ||  || ||||||||||||||||||||| |||||| |||| | ||||| | ||||||  || |||||||    
T  34457662 ctcttgttgagtaaaatttatgtgggtatcgcattttaaaaatggatcccacataaagttgtgagatccacct-agttttatccaataagagagtgagtg 34457760  T
Q  182 ttagagagagtgctagaaagagagtgttct 211  Q
     || | ||| ||||||||||||||| ||||    
T  34457761 ctatatagaatgctagaaagagagttttct 34457790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 16875270 - 16875433
Alignment:
Q  44 tgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagt-gg 142  Q
    |||||||||||| | | | |||||||| | || ||| ||||||||||||| ||||| ||| |||| |||| | ||| |  ||| ||||||||||| | ||    
T  16875270 tgaggagtgctaggaacactctctttccagcactcaacctcttattgggtaaaattaatgcgggtcccactctttggacgtgggtcccacataaaatggg 16875369  T
Q  143 tgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtg 207  Q
    ||| ||||||||   ||| ||||||||  || |||||||||||||| |||| |||||||| ||||    
T  16875370 tga-acccacattgattttacccaataagagagtgagtgttagagaaagtgttagaaagatagtg 16875433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 26072237 - 26072113
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    |||||||||||||   |||||||  | |||| ||| ||||| || |||||||||||||||||||  ||||   |||||||||| | |||  ||||| |||    
T  26072237 ttattgggtgaaaacaatgtgggacctacactttggaaatgaattccacataaagtggtgagacatacattgatttcacccaaaaaaagaatgagtatta 26072138  T
Q  185 gagagagtgctagaaagagagtgtt 209  Q
    || ||||||||  ||||||||||||    
T  26072137 gaaagagtgctcaaaagagagtgtt 26072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 41746234 - 41746137
Alignment:
Q  51 tgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccc 150  Q
    ||||||| | ||||||||||||||| |||| || |||||| ||||||||||  || ||  ||| | ||| ||||  ||||||||||||||||||||||||    
T  41746234 tgctatgaacattctctttctaacactcactcttttattgagtgaaattca--tgagtctcacgctttggaaatccatcccacataaagtggtgagaccc 41746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 1205714 - 1205672
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgg 106  Q
    |||||||||||||| || || ||||||||||||||||||||||    
T  1205714 ctctttctaacatttactcttttattgggtgaaattcatgtgg 1205672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 10253174 - 10253232
Alignment:
Q  131 cacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagag 189  Q
    |||||||||||||| |||  |||| | ||||| |||||||||| |||||||||||||||    
T  10253174 cacataaagtggtgggacatacattaatttcatccaatagaagagtgagtgttagagag 10253232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 40971546 - 40971632
Alignment:
Q  132 acataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatt 218  Q
    ||||||||||||| |||  ||||   |||||| ||||| ||| ||||||| |||||||||||||  |||||||||||| ||| ||||    
T  40971546 acataaagtggtgggacatacattgatttcactcaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgttagcatt 40971632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 18237161 - 18237206
Alignment:
Q  63 tctctttctaacattcaccctcttattgggtgaaattcatgtgggt 108  Q
    ||||||||||||| ||||| || | |||||||||||||||||||||    
T  18237161 tctctttctaacactcaccttcctcttgggtgaaattcatgtgggt 18237206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 22524436 - 22524395
Alignment:
Q  67 tttctaacattcaccctcttattgggtgaaattcatgtgggt 108  Q
    ||||||||| |||| ||||||||||||||||| |||||||||    
T  22524436 tttctaacactcactctcttattgggtgaaatacatgtgggt 22524395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 25629693 - 25629648
Alignment:
Q  179 gtgttagagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    |||||| |||||||| |||||| |||||||||||||||||| ||||    
T  25629693 gtgttaaagagagtgttagaaatagagtgttcttaacatttctctt 25629648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 3899985 - 3900038
Alignment:
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||||||||| |||||||||||| ||||||||  ||| |||||||||||| |||||    
T  3899985 ccaatagaagagtgagtgttagaaagagtgct--aaaaagagtgttcttagcattt 3900038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 27726822 - 27726902
Alignment:
Q  63 tctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggt 143  Q
    ||||||||  ||| |||| || ||||||||||||||| |||||||| | |||| ||| |||||| ||||||  ||||||||    
T  27726822 tctctttcctacactcactcttttattgggtgaaattaatgtgggtcctacactttggaaatgggtcccactcaaagtggt 27726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 38732428 - 38732513
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaata 169  Q
    ||||||||| |||||||| |||||| |||||||  || ||||| | ||  ||||||||||||||||  ||||| ||||||||| ||||    
T  38732428 ctcttattgagtgaaatttatgtggataccacaatttaaaaataggtctaacataaagtggtgaga--cacatgagtttcacctaata 38732513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 7447718 - 7447564
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||    
T  7447718 ctctctctaacat-cactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgagacccacatgagcttcac 7447620  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||||    
T  7447619 ccaataggagggtgattgttatagagaatgctagaaagagagtgttcctaacattt 7447564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 64 - 210
Target Start/End: Original strand, 32439504 - 32439650
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |  ||||||     
T  32439504 ctctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgagccccacttgggtttcat 32439603  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    |||||||||   | |||||||||||||||||||||||||||||||||    
T  32439604 ccaatagaaaaataagtgttagagagagtgctagaaagagagtgttc 32439650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 17221646 - 17221519
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    |||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||| | | ||||||| ||||  ||  ||||||    
T  17221646 ctcttattggatgaaattcatgtaggtaccatacattgaaaatagatcccacataaagtggtgagtcccacttgaatttcacctaataagagaatgagtg 17221547  T
Q  182 ttagagagagtgctagaaagagagtgtt 209  Q
      ||| ||||| ||||||||||||||||    
T  17221546 gcagaaagagtactagaaagagagtgtt 17221519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 30480017 - 30479870
Alignment:
Q  63 tctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacatt-gaaaatggatcccacataaagtggtgagacccacataagtttc 161  Q
    ||||||||||| | | || || ||||| ||| | ||||||||||||| ||||| || || | |||||||||||||||||||| ||||||||||| ||||     
T  30480017 tctctttctaatacttactcttttatttggtaatattcatgtgggtatcacacttttgatactggatcccacataaagtggtaagacccacatatgtttt 30479918  T
Q  162 acccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    || |||||| ||  ||| ||||| ||||||| ||||||||| ||||||    
T  30479917 actcaataggagaatgaatgttaaagagagttctagaaagatagtgtt 30479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 28030726 - 28030642
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccaca 153  Q
    ||||||||||||  ||||||| |||| ||| ||||||||||| |||  ||||||||||||| ||||||| || ||||||||||||    
T  28030726 tctaacattcactttcttattaggtgtaatccatgtgggtacaacattttgaaaatggatctcacataatgttgtgagacccaca 28030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 19090288 - 19090394
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttct 211  Q
    |||| ||| ||||||| |||||||||||||||| |||  ||||   |||||||||||| ||| ||| ||| |||||||||||||  |||||||||||| |    
T  19090288 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaagagagtgttgt 19090387  T
Q  212 taacatt 218  Q
    || ||||    
T  19090388 tagcatt 19090394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 35128769 - 35128893
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  |||| ||  | |||| ||||||||||| |||||||||||||||| |||  ||||   ||| |||||||| ||| |||| || ||    
T  35128769 ttattgggtgaaatcaatgtaggacctacactttgaaaatggaacccacataaagtggtgggacatacattgattttacccaataaaagagtgactgcta 35128868  T
Q  185 gagagagtgctagaaagagagtgtt 209  Q
    ||||||||| |  ||||||||||||    
T  35128869 gagagagtgttcaaaagagagtgtt 35128893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 32439548 - 32439485
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    |||||||| | ||||||||||||  || ||||||||||||||||||| | ||||||||||||||    
T  32439548 acccacatgaatttcacccaataagagagtgagtgttagagagagtgtttgaaagagagtgttc 32439485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 3928945 - 3929059
Alignment:
Q  95 aaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgc 194  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||    |||||| ||||| |||||||   |||||||| | |||||||||||| | |||    
T  3928945 aaattcatgtgagtaccatatattgaaaattgatctcacataaaagaatgagactcacattagtttcattaaatagaagagcgagtgttagagaaaatgc 3929044  T
Q  195 tagaaagagagtgtt 209  Q
    || ||| | ||||||    
T  3929045 taaaaaaatagtgtt 3929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 31025237 - 31025287
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttca 162  Q
    |||| ||||||||||||||||||||||||||  |||  |||||||||||||    
T  31025237 acactttgaaaatggatcccacataaagtggcaagattcacataagtttca 31025287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 4595849 - 4595768
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtg 193  Q
    |||| ||||||||||| |||| | |||||||||||||  ||||   |||||| ||||| ||| ||||||| |||||||||||    
T  4595849 acactttgaaaatggaacccataaaaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagagagtg 4595768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 10060983 - 10061032
Alignment:
Q  160 tcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||||||||| ||  |||||||||||||||||||||  ||||||||||||    
T  10060983 tcacccaataaaaaagtgagtgttagagagagtgctcaaaagagagtgtt 10061032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 6861462 - 6861414
Alignment:
Q  176 tgagtgttagagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    ||||| ||||||||||||||||||||| ||| |||||| ||||| ||||    
T  6861462 tgagtattagagagagtgctagaaagaaagtattcttagcatttatctt 6861414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 47822007 - 47822152
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| ||  ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||||    
T  47822007 ctctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcac 47822106  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  47822107 ccaatagaagagtgagtgttagagagagtgcttgaaagagagtgtt 47822152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 36738485 - 36738640
Alignment:
Q  69 tctaacattcaccctcttattgggtgaaattcatgtgggtaccaca-----cattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||     | ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  36738485 tctaacattcactctcttattgagtgaaattcatgcgggtaccacaacacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcac 36738584  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||    
T  36738585 ccaataggagagtgagtgttagaaagagtgctaaaaagagagtgttcttaacattt 36738640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 51 - 190
Target Start/End: Complemental strand, 557543 - 557404
Alignment:
Q  51 tgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccc 150  Q
    ||||||||| | ||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  557543 tgctatggacactctctttctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagaccc 557444  T
Q  151 acataagtttcacccaatagaagggtgagtgttagagaga 190  Q
    |||| ||||||||||||||||    |||||||||||||||    
T  557443 acatgagtttcacccaatagattaatgagtgttagagaga 557404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 42815604 - 42815743
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  42815604 ttattgggtgaaattcatgtgggtaccgcacattgaaaatggattccccataaagtggtgagacccacatgagtttcacctaataagagggtgagtgtta 42815703  T
Q  185 gagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
     |||||||| |||||||||||||||| || ||||| ||||    
T  42815704 aagagagtgttagaaagagagtgttcctagcatttctctt 42815743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 41873568 - 41873429
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    |||||||||||| |||||||||||||||||||||  ||||||| ||||||||||||| |||||| ||||| |||||||||||||| ||  ||||||||||    
T  41873568 ttattgggtgaagttcatgtgggtaccacacattagaaatggaacccacataaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgtta 41873469  T
Q  185 gagagagtgctagaaagagagtgttcttaacatttttctt 224  Q
    |||||||||||||||||||||||||| || ||||| ||||    
T  41873468 gagagagtgctagaaagagagtgttcctagcatttctctt 41873429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 45508631 - 45508521
Alignment:
Q  83 tcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgt 182  Q
    |||||||||| ||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||| |  |||||||||||||||||  |||||||    
T  45508631 tcttattgggcgaaattcatgtgggtatgacacattgagaatggatcccacgtaaagtggtgagacccacgtgggtttcacccaatagaagaatgagtgt 45508532  T
Q  183 tagagagagtg 193  Q
    |||||||||||    
T  45508531 tagagagagtg 45508521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 39237668 - 39237784
Alignment:
Q  44 tgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggt 143  Q
    |||| ||| ||||||| ||| |||||| |||| |||| || |||||||||||| || ||||||||||||||||||| |||||||||||| ||||||||||    
T  39237668 tgagcagtactatggacattttctttccaacactcactcttttattgggtgaagtttatgtgggtaccacacattggaaatggatcccatataaagtggt 39237767  T
Q  144 gagacccacataagttt 160  Q
    ||||||||||| |||||    
T  39237768 gagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 43930112 - 43930028
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacc 149  Q
    |||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  43930112 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgagacc 43930028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 29310557 - 29310446
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    ||||||||| ||||||  ||  ||||| ||||||  || |||||||||||||||||||||||||||||||||| |||||||||||||| ||  |||||||    
T  29310557 ctcttattgagtgaaacccacatgggtcccacactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtg 29310458  T
Q  182 ttagagagagtg 193  Q
    ||||| ||||||    
T  29310457 ttagaaagagtg 29310446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 17878715 - 17878833
Alignment:
Q  71 taacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatag 170  Q
    ||||||| || |||||||||||||||| ||||||||||| ||||||||  |||| |||||||||||||||||||||| | |||| ||||||| | |||||    
T  17878715 taacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagatcgacatgagtttcagctaatag 17878814  T
Q  171 aagggtgagtgttagagag 189  Q
     ||  |||||||| |||||    
T  17878815 gagaatgagtgttggagag 17878833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 48745352 - 48745238
Alignment:
Q  93 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagt 192  Q
    ||||||| |||||| |||||||||||| |||||||||||||||||| || ||||||||||||   ||| ||||||||  || |||| ||||||||||| |    
T  48745352 tgaaatttatgtggataccacacattgcaaatggatcccacataaattgatgagacccacatggatttgacccaataagagagtgaatgttagagagaat 48745253  T
Q  193 gctagaaagagagtg 207  Q
    | || ||||||||||    
T  48745252 gttaaaaagagagtg 48745238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 16082817 - 16082937
Alignment:
Q  103 gtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaaga 202  Q
    |||||||||||| |||| || ||||| |||||||||| |||||||||||||| | ||||||| ||||| || |||| | ||||| ||||||||||| | |    
T  16082817 gtgggtaccacatattggaagtggattccacataaagaggtgagacccacatgaatttcacctaatagcagagtgaatattagaaagagtgctagagaaa 16082916  T
Q  203 gagtgttcttaacatttttct 223  Q
    || ||||| || |||||||||    
T  16082917 gaatgttcctagcatttttct 16082937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 46947901 - 46947787
Alignment:
Q  77 tcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggt 176  Q
    |||| ||||||| |||||||| |||||||| | |||||| ||||||||| ||||| ||||||||||||||||||||||  ||||||||| ||| ||| ||    
T  46947901 tcactctcttatagggtgaaactcatgtggtt-ccacactttgaaaatgcatcccgcataaagtggtgagacccacatgggtttcaccc-ataaaagagt 46947804  T
Q  177 gagtgttagagagagtg 193  Q
     ||| ||||||||||||    
T  46947803 aagtattagagagagtg 46947787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 25980883 - 25980749
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||| ||||||  |||||| |||||||  ||| ||||  | |||||||||| ||||||||| |||   | ||||| |||||||||| |||||| |||    
T  25980883 ttattggatgaaatcaatgtggataccacattttggaaattaaccccacataaaatggtgagacacacgcgaatttcatccaatagaagagtgagtttta 25980784  T
Q  185 gagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||||| |||||| ||||||||| || |||||    
T  25980783 gagagagtgttagaaatagagtgttcctagcattt 25980749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 47822040 - 47821990
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  47822040 tttcacccaatataagagtgagtgttagagagagtgctagaaagagagtgt 47821990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 32377402 - 32377306
Alignment:
Q  72 aacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaata 169  Q
    ||||| ||| ||||||| |||||||||| |  |||||| |||||||||||||| |||||||||||||||||| ||||| |||||| ||| | ||||||    
T  32377402 aacatccactctcttat-gggtgaaatttacatgggtatcacacattgaaaatcgatcccacataaagtggtaagacctacataaattttatccaata 32377306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 43930068 - 43930129
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  43930068 acccacatgaatttcacccaataaaagagtgagtgttagagagagtgttagaaagagagtgt 43930129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 3399124 - 3399039
Alignment:
Q  83 tcttattgggtgaaattcatgtgggtac----cacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacc 164  Q
    |||||||| ||||||||||||||||||     ||||||||||||||  |||  ||||||||||||||||||||||| |||||||||    
T  3399124 tcttattgagtgaaattcatgtgggtatataacacacattgaaaataaatcttacataaagtggtgagacccacatgagtttcacc 3399039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 13919914 - 13919790
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  |||| ||  | |||| ||||||||||| |||||||||||||||| |||  ||||   |||||||||||| | | | ||||| ||    
T  13919914 ttattgggtgaaatcaatgtaggacctacactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaatgagcgagtgcta 13919815  T
Q  185 gagagagtgctagaaagagagtgtt 209  Q
    |||||||||||  ||||||||||||    
T  13919814 gagagagtgctcaaaagagagtgtt 13919790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 25695892 - 25696012
Alignment:
Q  49 agtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagac 148  Q
    ||||||||| | | ||||||| |||||||||  || ||||||  ||||||||||| |  ||||||| |||  ||||||| | |||||||| ||||||||     
T  25695892 agtgctatgtatactctctttttaacattcaatcttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtgagat 25695991  T
Q  149 ccacataagtttcacccaata 169  Q
    |||||| ||||||||||||||    
T  25695992 ccacatgagtttcacccaata 25696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 22786258 - 22786161
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||| ||| ||||||| ||||||||||||||||||||  ||||   ||||||| |||| ||  ||||||| |||||||||||||  ||||||||||||    
T  22786258 acactttggaaatggaacccacataaagtggtgagacatacattgatttcacctaataaaaaagtgagtgctagagagagtgctcaaaagagagtgtt 22786161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 49160380 - 49160292
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaag 173  Q
    ||||||| ||||||  || || |||| ||||||||||||||||||||| |||||||| |||||||||  | | ||||||| ||||||||    
T  49160380 ttattggatgaaatctatctgagtactacacattgaaaatggatcccaaataaagtgttgagacccatgtgaatttcaccgaatagaag 49160292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 26703465 - 26703596
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| |||| || |||| || ||||||||||||||  |||| ||  | |||| ||  ||||||| ||||||||||||||||||||  ||||   ||||||    
T  26703465 ctctctctagcactcactcttttattgggtgaaataaatgtaggacctacactttagaaatggaacccacataaagtggtgagacatacattgatttcac 26703564  T
Q  164 ccaatagaagggtgagtgttagagagagtgct 195  Q
    |||||| ||| ||||||| |||||||| ||||    
T  26703565 ccaataaaagagtgagtgctagagagaatgct 26703596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 32000501 - 32000434
Alignment:
Q  71 taacattcaccctcttattgggtgaaattcatgtgggtacca-cacattgaaaatggatcccacataa 137  Q
    ||||| |||| ||||||||||||||||| ||||||||| ||| |||||||||||||||  ||||||||    
T  32000501 taacactcactctcttattgggtgaaatacatgtgggttccaccacattgaaaatggacgccacataa 32000434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 19494385 - 19494507
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgtta 184  Q
    ||||||||||||||  |||| ||  | |||| ||||||||||| |||||||||||||||| |||  ||||   |||||||||||| ||| ||||||  ||    
T  19494385 ttattgggtgaaatcaatgtaggatctacactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtacta 19494484  T
Q  185 gagagagtgctagaaagagagtg 207  Q
    |||| ||| ||  ||||||||||    
T  19494485 gagaaagtactcaaaagagagtg 19494507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 22159034 - 22159090
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattca 101  Q
    ||||||||||||||| | ||||||||||||| |||  ||||||||||||||| ||||    
T  22159034 gaggagtgctatggatactctctttctaacactcattctcttattgggtgaatttca 22159090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 22217742 - 22217798
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattca 101  Q
    ||||||||||||||| | ||||||||||||| |||  ||||||||||||||| ||||    
T  22217742 gaggagtgctatggatactctctttctaacactcattctcttattgggtgaatttca 22217798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 46336107 - 46336044
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccac-acattgaaaatggatcccacataaagtggtg 144  Q
    ||||||||||||||||| ||| ||||| |||| || |||||||||| | |||||||||||||||    
T  46336107 ctcttattgggtgaaatacatttgggtcccacaactttgaaaatgggttccacataaagtggtg 46336044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 17354600 - 17354697
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||| ||| |||| || |||||||||||||||| |||  ||||   ||||| |||||| |||  ||||||||||||||||||||  ||| ||||||||    
T  17354600 acactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaagaatgagtgttagagagagtgctcaaaaaagagtgtt 17354697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 22155936 - 22155981
Alignment:
Q  165 caatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||    
T  22155936 caataaaagagtgagtgttagagagagtgttagaaagagagagttc 22155981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 22211851 - 22211896
Alignment:
Q  165 caatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||    
T  22211851 caataaaagagtgagtgttagagagagtgttagaaagagagagttc 22211896  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 2520694 - 2520642
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    |||||||||||| ||| ||||||||| ||||||||| |  |||||||||||||    
T  2520694 tttcacccaataaaagagtgagtgttggagagagtgttgaaaagagagtgttc 2520642  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 18040326 - 18040362
Alignment:
Q  72 aacattcaccctcttattgggtgaaattcatgtgggt 108  Q
    ||||||||| || ||||||||||||||||||||||||    
T  18040326 aacattcactcttttattgggtgaaattcatgtgggt 18040362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 22606680 - 22606724
Alignment:
Q  175 gtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||||||||||| | |||||||||||||||||  ||||||||    
T  22606680 gtgagtgttagagagtgcgctagaaagagagtgtttctaacattt 22606724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 36738612 - 36738568
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggt 108  Q
    |||||||||||| |||| ||| |||||||||||| ||||||||||    
T  36738612 ctctttctaacactcactctcctattgggtgaaactcatgtgggt 36738568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 54187082 - 54186927
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||  ||||| ||||||||    
T  54187082 ctctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcac 54186983  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||| || |||| |||||||||||||| ||||||||||||||||||| |||||    
T  54186982 ccaataggagagtgaatgttagagagagtgttagaaagagagtgttcttagcattt 54186927  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 13639430 - 13639578
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| || ||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  13639430 ctctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagacccacatgagtttcac 13639529  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgttctt 212  Q
    |||||||||  ||| | ||||||||||||||||||||||| ||||||||    
T  13639530 ccaatagaatagtgggcgttagagagagtgctagaaagagggtgttctt 13639578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 48543288 - 48543141
Alignment:
Q  72 aacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaataga 171  Q
    |||| |||| |||||||||||||||||||||||||||| || |||||| ||||||| |||||||||| |||||||||||||||  |||| | |||||||     
T  48543288 aacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 48543189  T
Q  172 agggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    || ||||||||||||| ||||||||||||||||||||||||| |||||    
T  48543188 agagtgagtgttagagtgagtgctagaaagagagtgttcttagcattt 48543141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 20909428 - 20909291
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtg 181  Q
    |||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| || || || ||||    
T  20909428 ctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgagacccacatgagtttcacccaaaaggagagtaagtg 20909329  T
Q  182 ttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    |||||||| ||| ||||||||||| |||| ||||||||    
T  20909328 ttagagagtgtgttagaaagagagcgttcctaacattt 20909291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 50320419 - 50320595
Alignment:
Q  42 gttgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtg 141  Q
    ||||||||||||||| || | ||||||||||||||| |  ||||||||||||||| ||||| |||||| ||||||||  ||||| |||||||||||| ||    
T  50320419 gttgaggagtgctatagacactctctttctaacatttattctcttattgggtgaagttcatatgggtatcacacattagaaatg-atcccacataaaatg 50320517  T
Q  142 gtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacattt 219  Q
    ||||||| || || |||||||  ||||||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  50320518 gtgagactcatatgagtttcattcaatagaagagtgagtgttagagagagtgctagaaagaaagtgttcctagcattt 50320595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 29235675 - 29235834
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||| |||||||||||||||||||||| || |||||||||||  |||||||||| ||||||||||||||||| || || ||||||||    
T  29235675 ctctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgagactcatatgagtttcac 29235774  T
Q  164 ccaatagaagggtga--gtgttagagagagtgctagaaagagagtgttcttaacattttt 221  Q
    ||||||| |  ||||  ||||||||||| |||||||||||||||||||| ||||||||||    
T  29235775 ccaataggaaagtgaatgtgttagagagggtgctagaaagagagtgttcctaacattttt 29235834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 38602836 - 38602958
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||| | |||| || ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  38602836 ctctctctaatactcactcttttattcggtaaaatttatgtgggtaccacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcac 38602935  T
Q  164 ccaatagaagggtgagtgttaga 186  Q
    ||||||| || ||||||| ||||    
T  38602936 ccaataggagagtgagtgctaga 38602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 46893518 - 46893373
Alignment:
Q  43 ttgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtgg 142  Q
    |||||||||| |||||| | |||||  |||||| |||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  46893518 ttgaggagtgttatggacactctct--ctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtgg 46893421  T
Q  143 tgagacccacataagtttcacccaatagaagggtgagtgttagagaga 190  Q
    ||||||  | || ||||||| |||| || |||||| |||||| |||||    
T  46893420 tgagacgaagatgagtttcatccaacaggagggtgggtgttaaagaga 46893373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 28215899 - 28215775
Alignment:
Q  45 gaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtg 144  Q
    ||||||||||||| |   |||||||||||||  ||| |||||||||||||||| ||| ||||||  ||||| ||| ||||||| ||| ||||||||| ||    
T  28215899 gaggagtgctatgaactgtctctttctaacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatg 28215800  T
Q  145 agacccacataagtttcacccaata 169  Q
    |||||||||| ||||||||||||||    
T  28215799 agacccacatgagtttcacccaata 28215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 42780698 - 42780817
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||| ||||||| |||  |||||||||| |||||| ||||| |||  ||||| | ||||||||||||||||||||||||||||||||||||  | |||||    
T  42780698 ctctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatcccacataaagtggtgagacccacatgggattcac 42780797  T
Q  164 ccaatagaagggtgagtgtt 183  Q
     |||||  || |||||||||    
T  42780798 tcaataagagagtgagtgtt 42780817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 1717764 - 1717899
Alignment:
Q  83 tcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgt 182  Q
    |||||||  ||||||||||||||| || || | |||| |||||||||  |||||||||||||||| ||| |||  ||||| | ||||  || ||||||||    
T  1717764 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgagatccatatagatttcatctaatacgagagtgagtgt 1717863  T
Q  183 tagagagagtgctagaaagagagtgttcttaacatt 218  Q
    |||| | |||  ||| ||||||||||||||||||||    
T  1717864 tagaaaaagtattagtaagagagtgttcttaacatt 1717899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 54140966 - 54141073
Alignment:
Q  112 acacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttct 211  Q
    |||| ||||||||||| ||||| |||||||||| |||  ||||   |||||||||||| | | ||||||| |||||||||||||  ||||| |||||| |    
T  54140966 acactttgaaaatggaacccacgtaaagtggtgggacatacattgatttcacccaataaatgagtgagtgctagagagagtgctcaaaagaaagtgttgt 54141065  T
Q  212 taacattt 219  Q
    ||||||||    
T  54141066 taacattt 54141073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 27243200 - 27243055
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcac 163  Q
    |||||||||| | |||| |||| ||||||| ||||  ||||||||   |||| ||| ||||||| |||||||||||||||| |||   |||   ||| |     
T  27243200 ctctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtgggacatgcattgattttat 27243101  T
Q  164 ccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    |||||| ||| ||||||||||||||||||| |  ||||||||||||    
T  27243100 ccaataaaagagtgagtgttagagagagtgttcaaaagagagtgtt 27243055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 37600212 - 37600309
Alignment:
Q  121 aaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaacatt 218  Q
    ||||||| |||||||||||||||| |||  ||||   |||||||||||| ||| ||| ||| |||||||||||||  |||||||||||| ||| ||||    
T  37600212 aaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaagagagtgttgttagcatt 37600309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 54140813 - 54140886
Alignment:
Q  116 attgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagag 189  Q
    |||| |||||||||||||||||||||||||||| | ||| | ||||||| ||||  || |||||||||||||||    
T  54140813 attggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttagagag 54140886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 13639479 - 13639411
Alignment:
Q  142 gtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    |||| |||||||| | ||||| |||||| ||| |||| |||||||||||||| ||||||||||||||||    
T  13639479 gtgatacccacatgaatttcatccaataaaagagtgactgttagagagagtgttagaaagagagtgttc 13639411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 26223257 - 26223190
Alignment:
Q  100 catgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaa 167  Q
    |||||||||| || | |||||||||||||||||||||||||| ||||| |||||| | ||||| ||||    
T  26223257 catgtgggtaacatatattgaaaatggatcccacataaagtgatgagatccacatgaatttcatccaa 26223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 48543252 - 48543315
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 210  Q
    |||||||| | ||||||||||||  || ||||||||| ||||||||| ||||||||||||||||    
T  48543252 acccacatgaatttcacccaataagagagtgagtgttggagagagtgttagaaagagagtgttc 48543315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 29235708 - 29235658
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    ||||||||||||  || ||||||||||||||||||| ||||||||||||||    
T  29235708 tttcacccaataagagagtgagtgttagagagagtgttagaaagagagtgt 29235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 54187050 - 54187099
Alignment:
Q  159 ttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgt 208  Q
    |||||||||||  || ||||||||||||||||||| ||||||||||||||    
T  54187050 ttcacccaataagagagtgagtgttagagagagtgttagaaagagagtgt 54187099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 87004 - 86916
Alignment:
Q  114 acattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaaga 202  Q
    |||||||||||| |||  ||||||||||||||||| ||||| ||||| || | |||| |  ||| |||||||||||| ||||| |||||    
T  87004 acattgaaaatgaatcttacataaagtggtgagactcacatgagtttgactcgataggaaagtgggtgttagagagaatgctataaaga 86916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 38602880 - 38602820
Alignment:
Q  147 acccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtg 207  Q
    |||||||||| ||| ||| |||| ||| |||||| |||||||||||| |||||||||||||    
T  38602880 acccacataaattttaccgaataaaagagtgagtattagagagagtgttagaaagagagtg 38602820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 46237128 - 46237216
Alignment:
Q  121 aaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    ||||||| |||||||||||||||| |||  ||||   ||||| |||||| ||| |||| || |||||||||||||  ||||||||||||    
T  46237128 aaatggaacccacataaagtggtgggacatacattgatttcatccaataaaagagtgattgctagagagagtgctcaaaagagagtgtt 46237216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 3770543 - 3770586
Alignment:
Q  63 tctctttctaacattcaccctcttattgggtgaaattcatgtgg 106  Q
    |||||||| |||| |||| |||||||||||||||||||||||||    
T  3770543 tctctttccaacactcactctcttattgggtgaaattcatgtgg 3770586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 24748968 - 24748917
Alignment:
Q  158 tttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgtt 209  Q
    ||||| |||||| ||| |||||||||||||||||||||  ||||||||||||    
T  24748968 tttcatccaataaaagagtgagtgttagagagagtgctcaaaagagagtgtt 24748917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 357894 - 357833
Alignment:
Q  85 ttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgag 146  Q
    ||||||| ||||||  |||| ||||| |||| ||| ||||||| ||||||||||||||||||    
T  357894 ttattggatgaaatcaatgtaggtactacactttggaaatggaacccacataaagtggtgag 357833  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 28215387 - 28215351
Alignment:
Q  133 cataaagtggtgagacccacataagtttcacccaata 169  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  28215387 cataaagtgatgagacccacatgagtttcacccaata 28215351  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 45800722 - 45800795
Alignment:
Q  43 ttgaggagtgctatggaaattctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacatt 118  Q
    ||||||| || |||||| | ||| ||||||||| |||  || ||||||||||||||  ||||||||||||||||||    
T  45800722 ttgaggactgttatggacactctgtttctaacactcattcttttattgggtgaaat--atgtgggtaccacacatt 45800795  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 46156769 - 46156689
Alignment:
Q  71 taacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccca 151  Q
    ||||| |||| || ||||||||||||||   ||||||  | |||||| | ||| || ||||||||||||||||||||||||    
T  46156769 taacactcactcttttattgggtgaaatcgttgtggggcctacacataggaaaagggtcccacataaagtggtgagaccca 46156689  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 46576050 - 46575974
Alignment:
Q  117 ttgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagtg 193  Q
    ||||||||||| |||||| ||||||||| |||  ||||  |||||| ||||||  || ||||||||| |||||||||    
T  46576050 ttgaaaatggaacccacaaaaagtggtgggacatacattggtttcagccaataagagagtgagtgtttgagagagtg 46575974  T

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Target: scaffold0922 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 711 - 791
Alignment:
Q  82 ctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttca 162  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  711 ctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 791  T

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Target: scaffold0147 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 28451 - 28361
Alignment:
Q  64 ctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacat 154  Q
    ||||||| ||||  ||| |||||||||||||||||  |||||||| |||||| |||||||||| ||||||||||| || || |||||||||    
T  28451 ctctttccaacacccactctcttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcccacataaattgatgggacccacat 28361  T

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Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 17925 - 18050
Alignment:
Q  93 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacataagtttcacccaatagaagggtgagtgttagagagagt 192  Q
    ||||||| |||| ||||||| || ||| ||| |||||| |||||||||||| | |||||||||| |||||| | |||  || ||| |||||||||| |||    
T  17925 tgaaatttatgtaggtaccaaactttggaaagggatcc-acataaagtggttaaacccacataaatttcactcgatatgagagtgggtgttagagaaagt 18023  T
Q  193 gctagaaagagagtgttcttaacattt 219  Q
    | ||||||  |||||||| ||||||||    
T  18024 gttagaaaaggagtgttcataacattt 18050  T

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