View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_high_46 (Length: 313)
Name: NF15735_high_46
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 14471361 - 14471063
Alignment:
| Q |
1 |
agggaatagtaaaagataaaaatttgtaatttgggcagattatctacnnnnnnnncttcagctgaattttacgagcttttcagcaagcaacatgataatt |
100 |
Q |
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| T |
14471361 |
agggaatggtaaaagataaaaatttgtaatttgggcagattatctacctttttttcttcagctgaattttacaagcttttcagcaagcaacatgataatt |
14471262 |
T |
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| Q |
101 |
aaggccaaaatctccattgtttgttcatattaattaaatataatatctagttaaaaaccagagagttatctccatttagcaaattttgaatgctaagcta |
200 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14471261 |
aaggccaaaatctccattgtttgttcatgttaattgaatataatatctagttaaaaaccagagagttatttccatttagcaaattttgaatgctaagcta |
14471162 |
T |
|
| Q |
201 |
tgtaacacctacacttcagattnnnnnnntgtttggtgcgtgagacatgctgttacattcaattatgcagttttctcaaattgttaccgatgtcaatgt |
299 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14471161 |
tgtaacacctacacttcagattaaagaaatgtttggtgcgtgagacatgctgttacattcaattatgcagttttctcaaattgttactgatgtcaatgt |
14471063 |
T |
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