View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_high_53 (Length: 281)
Name: NF15735_high_53
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_53 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 44550453 - 44550203
Alignment:
| Q |
16 |
atatatatgccctacaattttgtccattttgatgaaaatgctgtctatttgcgcgttaaagaaagtgccccacaatattgaatggcctgcatttacctcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44550453 |
atatatatgccctacaattttgtccattttgatgaaaatgctgtctatttgcgcgttaaagaaagtgccccacaatattgaatggcctgcatttacctcc |
44550354 |
T |
|
| Q |
116 |
tatggattggaataattattctgttacacagcaactgtttgggacataaacgctccagttgcagtactcttcccttgcatgcataaaagtctacggactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44550353 |
tatggattggaataattattctgttacacagcaactgtttgggacataaacgctccagttgcagtactcttcccttgcatgcataaaagtctacggactc |
44550254 |
T |
|
| Q |
216 |
tattcctttgtcggagccaaaacaatcgattccaccttcaccttattaatt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44550253 |
tattcctttgtcggagccaaaacaatcgattccaccttcaccttattaatt |
44550203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University