View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_high_60 (Length: 258)

Name: NF15735_high_60
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_high_60
NF15735_high_60
[»] chr1 (6 HSPs)
chr1 (1-258)||(33063106-33063361)
chr1 (1-122)||(11084976-11085097)
chr1 (1-122)||(45598647-45598768)
chr1 (3-122)||(40312540-40312659)
chr1 (1-122)||(52436133-52436254)
chr1 (32-122)||(17038982-17039072)
[»] chr2 (6 HSPs)
chr2 (1-122)||(18766399-18766520)
chr2 (1-122)||(18605913-18606034)
chr2 (5-122)||(13314282-13314399)
chr2 (5-123)||(29566737-29566855)
chr2 (45-122)||(20068793-20068870)
chr2 (62-122)||(25347947-25348006)
[»] chr3 (8 HSPs)
chr3 (1-122)||(8749760-8749881)
chr3 (1-122)||(9037426-9037547)
chr3 (18-122)||(9030738-9030842)
chr3 (42-125)||(11560805-11560888)
chr3 (41-122)||(7478480-7478560)
chr3 (62-122)||(7495243-7495302)
chr3 (41-122)||(13920287-13920367)
chr3 (62-127)||(3444344-3444408)
[»] chr5 (9 HSPs)
chr5 (1-122)||(34404750-34404871)
chr5 (16-122)||(17920105-17920211)
chr5 (1-122)||(7897233-7897353)
chr5 (1-122)||(26182551-26182672)
chr5 (1-122)||(20497468-20497589)
chr5 (17-122)||(20287298-20287403)
chr5 (43-123)||(20127725-20127804)
chr5 (72-122)||(17660759-17660808)
chr5 (70-120)||(22130201-22130250)
[»] chr4 (11 HSPs)
chr4 (1-121)||(46738580-46738700)
chr4 (1-122)||(11324585-11324706)
chr4 (3-120)||(19894132-19894249)
chr4 (15-122)||(24143868-24143975)
chr4 (1-122)||(22555694-22555816)
chr4 (21-122)||(23541983-23542084)
chr4 (1-123)||(15687015-15687138)
chr4 (32-127)||(25353946-25354041)
chr4 (3-71)||(11905812-11905880)
chr4 (41-122)||(31971698-31971778)
chr4 (43-122)||(16654590-16654668)
[»] chr8 (9 HSPs)
chr8 (1-123)||(17880054-17880176)
chr8 (1-120)||(8730651-8730770)
chr8 (1-122)||(39081627-39081748)
chr8 (5-120)||(17280612-17280727)
chr8 (5-123)||(33465477-33465594)
chr8 (21-123)||(18676530-18676632)
chr8 (1-128)||(37154836-37154962)
chr8 (5-124)||(22876742-22876861)
chr8 (28-118)||(23250488-23250577)
[»] chr7 (14 HSPs)
chr7 (1-122)||(12560531-12560652)
chr7 (1-122)||(30226789-30226910)
chr7 (1-119)||(3285621-3285739)
chr7 (1-122)||(48796938-48797057)
chr7 (1-122)||(14976153-14976272)
chr7 (1-122)||(15405629-15405748)
chr7 (57-122)||(11629403-11629468)
chr7 (1-116)||(7620802-7620917)
chr7 (22-122)||(11559820-11559920)
chr7 (43-131)||(4793884-4793971)
chr7 (41-122)||(9567674-9567754)
chr7 (43-119)||(42783537-42783613)
chr7 (1-48)||(11629360-11629407)
chr7 (28-98)||(4541983-4542052)
[»] chr6 (9 HSPs)
chr6 (18-122)||(16136897-16137001)
chr6 (17-122)||(19216691-19216796)
chr6 (1-122)||(20003804-20003925)
chr6 (44-124)||(12444061-12444141)
chr6 (5-123)||(32452712-32452830)
chr6 (5-122)||(9385339-9385456)
chr6 (5-123)||(15002476-15002594)
chr6 (62-122)||(16308665-16308724)
chr6 (28-89)||(21316920-21316981)
[»] scaffold0328 (1 HSPs)
scaffold0328 (17-120)||(16290-16393)
[»] scaffold0143 (1 HSPs)
scaffold0143 (5-123)||(37022-37140)
[»] scaffold0645 (1 HSPs)
scaffold0645 (42-125)||(1807-1890)
[»] scaffold0022 (1 HSPs)
scaffold0022 (44-122)||(3884-3962)
[»] scaffold0032 (1 HSPs)
scaffold0032 (5-122)||(103631-103749)
[»] scaffold0520 (2 HSPs)
scaffold0520 (28-120)||(5738-5829)
scaffold0520 (28-89)||(11993-12054)
[»] scaffold0034 (1 HSPs)
scaffold0034 (41-122)||(50205-50285)
[»] scaffold0064 (2 HSPs)
scaffold0064 (28-122)||(45263-45356)
scaffold0064 (43-122)||(52237-52315)
[»] scaffold0480 (1 HSPs)
scaffold0480 (28-122)||(11951-12044)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 33063106 - 33063361
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33063106 gcgtaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttagacaaaagtgaa 33063205  T
Q  101 gctaatatacaaatatccaacactataatttctaaaatgatatcaaagtctccttaattaatggtctgttggttgatagactattatatttccgatgtcg 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    |||||| |||||||||||||||||||||||||||||| |||||    
T  33063206 gctaatatacaaatatccaacactatgatttctaaaatgatatcaaagcctcc----ttaatgatctgttggttgatagactattatatttccgctgtcg 33063301  T
Q  201 aaccactcacc--atacatcgattgagagatagggaaatcatcaccttacaaactggtgt 258  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  33063302 aaccactcaccatatacatcgattgagagatagggaaatcatcaccttacaaactggtgt 33063361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11085097 - 11084976
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | ||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11085097 gcgtaaaacaaggcagggtgcaggttaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaa 11084998  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||| ||||||||||||    
T  11084997 gccaatatataaatatccaaca 11084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 45598768 - 45598647
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    |||||||||||   | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||    
T  45598768 gcgtaaaacaagacagggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacataaatatttgttttagccaaaaatgaa 45598669  T
Q  101 gctaatatacaaatatccaaca 122  Q
    |||||||| |||||||||||||    
T  45598668 gctaatattcaaatatccaaca 45598647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 40312659 - 40312540
Alignment:
Q  3 gtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagc 102  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||  |||||| ||||||||||||    
T  40312659 gtaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcttgtacaacatctcacatgaatattaattttaggcaaaagtgaagc 40312560  T
Q  103 taatatacaaatatccaaca 122  Q
     ||| |||||||||||||||    
T  40312559 caatctacaaatatccaaca 40312540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 52436254 - 52436133
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||   ||    
T  52436254 gcgtaaaacaaggcaaggtgcaggtcaactgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaaacaaa 52436155  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  52436154 gccaatatacaaatatccaaca 52436133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 17038982 - 17039072
Alignment:
Q  32 aaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  17038982 aaccatgcctggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 17039072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18766399 - 18766520
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18766399 gcgtaaaacaaggtaaggtgcaggtcaactgaaccatggcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 18766498  T
Q  101 gctaatatacaaatatccaaca 122  Q
    |  |||||||||||||||||||    
T  18766499 gtcaatatacaaatatccaaca 18766520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 18606034 - 18605913
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| ||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  18606034 gcgtaaaacaaggtagggtgcaggtcaattgaactatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaa 18605935  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  18605934 gccaatatacaaatatccaaca 18605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 13314399 - 13314282
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | |||||||||||||||||||||||  || |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||| |    
T  13314399 aaaacaaggcaaggtgcaggtcaactgaaccattccaagatgttggcacatcatgtccaacatctcacttgaatatttgttttaggcaaaagtgaagcca 13314300  T
Q  105 atatacaaatatccaaca 122  Q
    | ||||||||||||||||    
T  13314299 acatacaaatatccaaca 13314282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 29566737 - 29566855
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | || ||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||| |||||||||||||||| |||||||||||| |    
T  29566737 aaaacaaggcaatgtgcaggtcaactgaaccatgccaggatgttggcacattgtgtccaacatctcacttgaatatttgttttaggcaaaagtgaagcca 29566836  T
Q  105 atatacaaatatccaacac 123  Q
    | ||| |||||||||||||    
T  29566837 acatataaatatccaacac 29566855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 20068870 - 20068793
Alignment:
Q  45 tgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  20068870 tgttggcacatcgttttcaacatctcacataaatatttgttttagacaaaagtgaagccaatatacaaatatccaaca 20068793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 25347947 - 25348006
Alignment:
Q  62 caacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||||  |||||||||||||||||| ||||||||| || |||||| ||||||| ||||    
T  25347947 caacatcttgcatgaatatttgttttag-caaaagtgaggccaatatataaatatctaaca 25348006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8749760 - 8749881
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8749760 gcgtaaaacaaggcaaggtgcaagtcaactgaaccatgccaggatgttggcacatcatgttcaacatctcacatgaatatttgttttaggcaaaagtgaa 8749859  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  8749860 gccaatatacaaatatccaaca 8749881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9037426 - 9037547
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  9037426 gcgtaaaacaaggcaaggtgcacgtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgtttgaggcaaaagtgaa 9037525  T
Q  101 gctaatatacaaatatccaaca 122  Q
     | ||| |||||||||||||||    
T  9037526 accaatgtacaaatatccaaca 9037547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 9030842 - 9030738
Alignment:
Q  18 gtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatc 117  Q
    |||||| |||||||||||||| |||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  9030842 gtgcagatcaactgaaccatgccaggatgttgacacatcgtgttcaatatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatc 9030743  T
Q  118 caaca 122  Q
    |||||    
T  9030742 caaca 9030738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 11560888 - 11560805
Alignment:
Q  42 ggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacacta 125  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||||||    
T  11560888 ggatgttggcacatcgtgttcaacatctcacatgaatattcgttttaagcaaaagtgaagccaatatacaaacatccaacacta 11560805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 7478560 - 7478480
Alignment:
Q  41 aggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||||| ||||| | | ||||||| |||||||||||||||||||| ||||||| |||| || | ||||||||||||||    
T  7478560 aggatgttggaacatcgtatccaacatcacacatgaatatttgttttag-caaaagtaaagccaacacacaaatatccaaca 7478480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 7495302 - 7495243
Alignment:
Q  62 caacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||||    
T  7495302 caacatcacacatgaatatttgttttag-caaaagtgaagccaacacacaaatatccaaca 7495243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 13920287 - 13920367
Alignment:
Q  41 aggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||| | ||||| | | ||||||| |||||||||||||||||||| |||||||||||| || | ||||||||| ||||    
T  13920287 aggatgttagaacatcgtatccaacatcacacatgaatatttgttttag-caaaagtgaagccaacacacaaatatctaaca 13920367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 3444408 - 3444344
Alignment:
Q  62 caacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacactata 127  Q
    ||||||||  ||||||||||| |||||| ||| | ||| |||||||||||||||||||||| ||||    
T  3444408 caacatcttgcatgaatatttattttag-caataatgacgctaatatacaaatatccaacaatata 3444344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34404871 - 34404750
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  34404871 gcgtaaaacaaggaagggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaa 34404772  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  34404771 gccaatatacaaatatccaaca 34404750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 17920211 - 17920105
Alignment:
Q  16 aggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaata 115  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  17920211 aggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaata 17920112  T
Q  116 tccaaca 122  Q
    |||||||    
T  17920111 tccaaca 17920105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7897353 - 7897233
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||| | |||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||     
T  7897353 gcgtaaaactaggtaaggtgcaggtcaactgaac-atgccaggatgttgacacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgac 7897255  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  7897254 gccaatatacaaatatccaaca 7897233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26182672 - 26182551
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||    
T  26182672 gcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcctatgaatatttgttttaggcaaaagtgaa 26182573  T
Q  101 gctaatatacaaatatccaaca 122  Q
    |  |||||||||||||||||||    
T  26182572 gtcaatatacaaatatccaaca 26182551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20497589 - 20497468
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||  || |||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||    
T  20497589 gcgtaaaacaaggcagggtgcaggtcaactgaaccataccaagatgttggcacatcttgtacaacatctcacatgaatatttattttaggcaaaagtgaa 20497490  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||| ||||||||||||    
T  20497489 gccaatataaaaatatccaaca 20497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 20287298 - 20287403
Alignment:
Q  17 ggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatat 116  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||  ||||||||| ||||| ||||||||||||| || ||||||||||    
T  20287298 ggtggaggtcaactgaaccatgccaggatgttggcacattatgttcaacatctcatttgaatatttattttatacaaaagtgaagccaacatacaaatat 20287397  T
Q  117 ccaaca 122  Q
    ||||||    
T  20287398 ccaaca 20287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 20127725 - 20127804
Alignment:
Q  43 gatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacac 123  Q
    |||||||| ||||| | | |||||||| | ||||||||||||||||| ||||||||| || || | |||||||||||||||    
T  20127725 gatgttggaacatcgtatccaacatcttaaatgaatatttgttttag-caaaagtgaggccaacaaacaaatatccaacac 20127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 17660808 - 17660759
Alignment:
Q  72 catgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||||||||||||| ||| | |||||| |||||||||||||||||||    
T  17660808 catgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 17660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 22130250 - 22130201
Alignment:
Q  70 cacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaa 120  Q
    ||||||||||||||||||||| ||||||||||| || | ||||||||||||    
T  22130250 cacatgaatatttgttttaga-aaaagtgaagccaacacacaaatatccaa 22130201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 46738700 - 46738580
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  46738700 gcgtaaaacaaagtaggatgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaagtgaa 46738601  T
Q  101 gctaatatacaaatatccaac 121  Q
    |  ||||||||||||||||||    
T  46738600 gacaatatacaaatatccaac 46738580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11324706 - 11324585
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  11324706 gcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaa 11324607  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  11324606 gccaatatacaaatatccaaca 11324585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 19894249 - 19894132
Alignment:
Q  3 gtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagc 102  Q
    ||||||||| | | ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  19894249 gtaaaacaaggcagggtgcaggtcaactgaatcatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagc 19894150  T
Q  103 taatatacaaatatccaa 120  Q
     |||||||||| ||||||    
T  19894149 caatatacaaaaatccaa 19894132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 24143868 - 24143975
Alignment:
Q  15 aaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaat 114  Q
    |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||    
T  24143868 aaggtgtaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcatatgaatatttgttttaggcaaaagtgaagtcaatatacaaat 24143967  T
Q  115 atccaaca 122  Q
    ||||||||    
T  24143968 atccaaca 24143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22555694 - 22555816
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaacca-tgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtga 99  Q
    ||||||||||| | | |||||||||||||||||||| || || |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  22555694 gcgtaaaacaaggcagggtgcaggtcaactgaaccaatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtga 22555793  T
Q  100 agctaatatacaaatatccaaca 122  Q
    ||| |||||||||||||||||||    
T  22555794 agccaatatacaaatatccaaca 22555816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 23541983 - 23542084
Alignment:
Q  21 caggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaa 120  Q
    |||||||| ||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  23541983 caggtcaattgaaccatgccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaa 23542082  T
Q  121 ca 122  Q
    ||    
T  23542083 ca 23542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15687138 - 15687015
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtca-actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtga 99  Q
    ||||||||||| | ||||| |||| || || |||||||| ||||||||||| ||||| ||| ||||||| ||| |||||||||||||||| |||||||||    
T  15687138 gcgtaaaacaaggcaaggtacagggcataccgaaccatgccaggatgttggaacatcgtgtacaacatcacacttgaatatttgttttaggcaaaagtga 15687039  T
Q  100 agctaatatacaaatatccaacac 123  Q
    ||| || |||||||||||||||||    
T  15687038 agccaacatacaaatatccaacac 15687015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 25354041 - 25353946
Alignment:
Q  32 aaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacactata 127  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||  ||||||||||||||||||| ||||    
T  25354041 aaccatgcctggatgttggcacatcgtgttcaacatctcacatgaatattcattttaggcaaaagtgaaggcaatatacaaatatccaacaatata 25353946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 11905812 - 11905880
Alignment:
Q  3 gtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctca 71  Q
    ||||||||| | ||||| | |||||||||||||||| ||||||||||| ||||| ||| ||||||||||    
T  11905812 gtaaaacaaggcaaggtaccggtcaactgaaccatgccaggatgttggaacatcgtgtccaacatctca 11905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 31971698 - 31971778
Alignment:
Q  41 aggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||||| ||||| | | ||||||| ||||||||||||| |||||| |||||||||||  || | ||||||||||||||    
T  31971698 aggatgttggaacatcgtatacaacatcacacatgaatatttattttag-caaaagtgaagtcaacacacaaatatccaaca 31971778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 16654668 - 16654590
Alignment:
Q  43 gatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||| ||| ||| | |||||||  ||||||||||||||||||| ||| | |||||| |||| ||||||||||||||    
T  16654668 gatgttggaacaacatatccaacatcgtacatgaatatttgttttag-caataatgaagccaatacacaaatatccaaca 16654590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 17880176 - 17880054
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  17880176 gcgtaaaacaaggcaaggtgcaggtcaactgaaccatgccaagatgttggcacatcgtgttcaacatctcacatgcatatttgttttaggcaaaagtgaa 17880077  T
Q  101 gctaatatacaaatatccaacac 123  Q
    || |||||||||| |||||||||    
T  17880076 gccaatatacaaagatccaacac 17880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 8730651 - 8730770
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  8730651 gcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaggatgttgtcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaa 8730750  T
Q  101 gctaatatacaaatatccaa 120  Q
    |  |||||||||||||||||    
T  8730751 gtcaatatacaaatatccaa 8730770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39081627 - 39081748
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||| |||||||||||||||||| |||  | ||||||||||||||||||||||||| |||||| ||||||||||    
T  39081627 gcgtaaaacaaggcagggtgcaggtcaactaaaccatgtcaggatgttgacacgccgtgttcaacatctcacatgaatatttattttaggcaaaagtgaa 39081726  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  39081727 gccaatatacaaatatccaaca 39081748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 17280612 - 17280727
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | ||||| || ||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |    
T  17280612 aaaacaaggcaaggtacaagtcaactgaaccatgccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagcca 17280711  T
Q  105 atatacaaatatccaa 120  Q
    ||||||||||||||||    
T  17280712 atatacaaatatccaa 17280727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 33465594 - 33465477
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||||| |||||||||||| |    
T  33465594 aaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgtccaacatctcacttgaatattt-ttttaggcaaaagtgaagcca 33465496  T
Q  105 atatacaaatatccaacac 123  Q
    | |||||||||||||||||    
T  33465495 acatacaaatatccaacac 33465477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 18676530 - 18676632
Alignment:
Q  21 caggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaa 120  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||   |||||||||||||| ||    
T  18676530 caggtcaactgaaccatgccaggatgttggcacatcgtgctcaacatctcacatgaatatttgttttaggcaaaagtgaaatcaatatacaaatatctaa 18676629  T
Q  121 cac 123  Q
    |||    
T  18676630 cac 18676632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 37154962 - 37154836
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||  ||| ||||||||||||||  |||| ||||    
T  37154962 gcgtaaaacaacgcagggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatct-gcattaatatttgttttaggtaaaaatgaa 37154864  T
Q  101 gctaatatacaaatatccaacactataa 128  Q
    || |||||||| |||||||||| |||||    
T  37154863 gccaatatacatatatccaacaatataa 37154836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 22876742 - 22876861
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||| | |||||||||||||| |||||||||||| |    
T  22876742 aaaacaaggcaaggtgcagatcaactgaaccatgccaggatgttgggacatcttgtccaacatctcacttaaatatttgttttaggcaaaagtgaagcca 22876841  T
Q  105 atatacaaatatccaacact 124  Q
    | ||| |||||| |||||||    
T  22876842 acatataaatattcaacact 22876861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 23250488 - 23250577
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatcc 118  Q
    ||||||||||| ||||||||||| ||||| ||| ||| ||| ||| |||||||||||| |||| ||||||| ||| || | ||||||||||    
T  23250488 actgaaccatgccaggatgttggaacatcgtgtccaatatcacacttgaatatttgttgtaga-aaaagtgcagccaacacacaaatatcc 23250577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 12560652 - 12560531
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  12560652 gcgtaaaacaaggcagggtggaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaa 12560553  T
Q  101 gctaatatacaaatatccaaca 122  Q
    |  |||||||||||||||||||    
T  12560552 gtcaatatacaaatatccaaca 12560531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30226789 - 30226910
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | ||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||    
T  30226789 gcgtaaaacaaggcagggtgcaggtcaactgaatcatgccaggatgttggcacatcgtgtccaacatctcccatgaatatttgttttaggcaaaagtgaa 30226888  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  30226889 gccaatatacaaatatccaaca 30226910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 3285739 - 3285621
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  3285739 gcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaggatgttggcatatcgtgttcaacatctcacataaatatttgttttaggcaaaagtgaa 3285640  T
Q  101 gctaatatacaaatatcca 119  Q
    |  ||||||||||||||||    
T  3285639 gtcaatatacaaatatcca 3285621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 48797057 - 48796938
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||||| |||||| ||||||||||    
T  48797057 gcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgttcaacatct--catgaatatttattttaggcaaaagtgaa 48796960  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  48796959 gccaatatacaaatatccaaca 48796938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 14976153 - 14976272
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||| ||||||| ||||||| |||||| |||||||||| ||||||||||||| |  |||||||||||||||  |||||||||    
T  14976153 gcgtaaaacaaggcagggtgcaagtcaactaaaccatgccaggatattggcacatcgtgttcaacatctctc--gaatatttgttttaggaaaaagtgaa 14976250  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  14976251 gccaatatacaaatatccaaca 14976272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15405629 - 15405748
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | |||||| ||||||| ||||||| |||||| |||||||||| ||||||||||||| |  |||||||||||||||  |||||||||    
T  15405629 gcgtaaaacaaggcagggtgcaagtcaactaaaccatgccaggatattggcacatcgtgttcaacatctctc--gaatatttgttttaggaaaaagtgaa 15405726  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  15405727 gccaatatacaaatatccaaca 15405748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 11629403 - 11629468
Alignment:
Q  57 atgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  11629403 atgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 11629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 7620802 - 7620917
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | | | |||| |||||| ||||| || |||||||||| |||||| |||| |||||||||||||||||||| |||||| ||||| ||||    
T  7620802 gcgtaaaacaaggcaggatgcatgtcaaccgaaccttgccaggatgttgacacatcgtgtttaacatctcacatgaatatttattttaggcaaaaatgaa 7620901  T
Q  101 gctaatatacaaatat 116  Q
    || |||||||||||||    
T  7620902 gccaatatacaaatat 7620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 11559920 - 11559820
Alignment:
Q  22 aggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaac 121  Q
    ||||||||| ||||||| |||||| |||| ||||| ||| ||||||||||| |||||||||||||||| ||||| ||| || || || ||||||||||||    
T  11559920 aggtcaactaaaccatgccaggatattggaacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaatgaggccaacattcaaatatccaac 11559821  T
Q  122 a 122  Q
    |    
T  11559820 a 11559820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 4793971 - 4793884
Alignment:
Q  43 gatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacactataattt 131  Q
    |||||||| ||||| | | ||||||| |||||||||||||||||||| |||||||||||| || | |||||||||||||| | ||||||    
T  4793971 gatgttggaacatcgtatccaacatcacacatgaatatttgttttag-caaaagtgaagccaacacacaaatatccaacaatgtaattt 4793884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 9567674 - 9567754
Alignment:
Q  41 aggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||||| ||||| | | ||||||| |||||||||||||||||||| ||||||||| || || | ||||||||||||||    
T  9567674 aggatgttggaacatcgtatccaacatcacacatgaatatttgttttag-caaaagtgaggccaacacacaaatatccaaca 9567754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 42783537 - 42783613
Alignment:
Q  43 gatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatcca 119  Q
    |||||||| ||||  ||||| |||||| |  |||||||||||||||| |||||||||||| || |||||||||||||    
T  42783537 gatgttggaacattgtgttccacatctgaagtgaatatttgttttaggcaaaagtgaagccaacatacaaatatcca 42783613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11629360 - 11629407
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgtt 48  Q
    ||||||||||| | |||||||||||||||||||||||| |||||||||    
T  11629360 gcgtaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtt 11629407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 4542052 - 4541983
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtg 98  Q
    ||||||||||| ||||||||||| ||||  ||| ||||||| ||| |||||||||||||||| ||||||||    
T  4542052 actgaaccatgccaggatgttggaacatggtgtccaacatcacacttgaatatttgttttag-caaaagtg 4541983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 16137001 - 16136897
Alignment:
Q  18 gtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatc 117  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  16137001 gtgcaggtcaactgaaccatgacaggatgttggcacatcgtgttcaacatctcacatgaatatttgtttttggcaaaagtgaagccaatatacaaatatc 16136902  T
Q  118 caaca 122  Q
    |||||    
T  16136901 caaca 16136897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 19216691 - 19216796
Alignment:
Q  17 ggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatat 116  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  19216691 ggtgcaggtcaacttaaccatgccaggatattggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatagacaaatat 19216790  T
Q  117 ccaaca 122  Q
    ||||||    
T  19216791 ccaaca 19216796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20003804 - 20003925
Alignment:
Q  1 gcgtaaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaa 100  Q
    ||||||||||| | |||||||| ||||||| |||||||  ||||||||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||    
T  20003804 gcgtaaaacaaggcaaggtgcaagtcaactaaaccatgctaggatgttgacacatcgtgttcaacatcccacatgaatatttcttttaggcaaaagtgaa 20003903  T
Q  101 gctaatatacaaatatccaaca 122  Q
    || |||||||||||||||||||    
T  20003904 gccaatatacaaatatccaaca 20003925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 12444141 - 12444061
Alignment:
Q  44 atgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacact 124  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  12444141 atgttggcacatcatgttcaacatctcacatgaatattcgttttaggcaaaagtgaagccaatatacaaatatccaacact 12444061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 32452712 - 32452830
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | ||| |||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||||| |||||||||||  |    
T  32452712 aaaacaaggcaagatgcatgtcaactgaaccatgccaggatgttggcacatcgtgtccaacatctcacttgaatatttattttaggcaaaagtgaaggca 32452811  T
Q  105 atatacaaatatccaacac 123  Q
    | |||||||||||||||||    
T  32452812 acatacaaatatccaacac 32452830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 9385339 - 9385456
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | ||||| ||||||||||||||||||   ||||||||||||||| ||| ||||||||||| |||||||||||||||  |||||||||| | |    
T  9385339 aaaacaaggcaaggtccaggtcaactgaaccatgcagggatgttggcacatcgtgtccaacatctcacttgaatatttgttttaagcaaaagtgaatcca 9385438  T
Q  105 atatacaaatatccaaca 122  Q
    ||||||||||||||||||    
T  9385439 atatacaaatatccaaca 9385456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 15002594 - 15002476
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | || ||||||||||||||||||||| || |||||||||||||| ||| ||||||||||| |||||||||||||||| |||||  ||| | |    
T  15002594 aaaacaaggcaatgtgcaggtcaactgaaccatgccacgatgttggcacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaaagaaacca 15002495  T
Q  105 atatacaaatatccaacac 123  Q
    | |||||||||||||||||    
T  15002494 acatacaaatatccaacac 15002476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 16308724 - 16308665
Alignment:
Q  62 caacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||||    
T  16308724 caacatcacacatgaatatttgttttag-caaaagtgaagccaacacacaaatatccaaca 16308665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 21316981 - 21316920
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttag 89  Q
    ||||||| ||| ||||||||||| ||||||| | |||||||  ||| |||||||||||||||    
T  21316981 actgaactatgccaggatgttggaacatcatatccaacatcatacaagaatatttgttttag 21316920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 16393 - 16290
Alignment:
Q  17 ggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatat 116  Q
    ||||||||| || |||||||||  |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  16393 ggtgcaggttaattgaaccatgctaggatgttggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatat 16294  T
Q  117 ccaa 120  Q
    ||||    
T  16293 ccaa 16290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 37022 - 37140
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagcta 104  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||  || |||||| |||||||||||| |    
T  37022 aaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgtccaacatctcacttgaattatttttttaggcaaaagtgaagcca 37121  T
Q  105 atatacaaatatccaacac 123  Q
    | |||||||||||||||||    
T  37122 acatacaaatatccaacac 37140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 1807 - 1890
Alignment:
Q  42 ggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaacacta 125  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||||||    
T  1807 ggatgttggcacatcgtgttcaacatctcacatgaatattcgttttaagcaaaagtgaagccaatatacaaacatccaacacta 1890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 3884 - 3962
Alignment:
Q  44 atgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3884 atgttggtacatcgtcttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 3962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 103631 - 103749
Alignment:
Q  5 aaaacaaagtaaggtgcaggtcaactgaaccatgtcaggatgttggcacatcatgttcaacatctcac-atgaatatttgttttagacaaaagtgaagct 103  Q
    ||||||| | |||||||||||||||||||||||| |||||||| || || |||| | |||||||||||  |||||||||||||||| ||||||||||||     
T  103631 aaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtaggaacgtcatatccaacatctcactttgaatatttgttttaggcaaaagtgaagcc 103730  T
Q  104 aatatacaaatatccaaca 122  Q
    || || |||||||| ||||    
T  103731 aacattcaaatatcgaaca 103749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 5738 - 5829
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaa 120  Q
    ||||||||||| ||||||||||| ||||||| | |||||||  | |||||||||||||||||  ||||||||||||||||| |||||||||||    
T  5738 actgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttag-gaaaagtgaagctaatattcaaatatccaa 5829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 11993 - 12054
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttag 89  Q
    ||||||||||| ||||||||||| ||||||| | |||||||  | |||||||||||||||||    
T  11993 actgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttag 12054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 50285 - 50205
Alignment:
Q  41 aggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||||| ||||| | | ||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||||    
T  50285 aggatgttggaacatcgtatccaacatcacacatgaatatttgttttag-caaaagtgaagccaacacacaaatatccaaca 50205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 45356 - 45263
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    ||||||||||| || |||||||| ||||| | | |||||||  |||||||||||||||||||| ||||||||||  || | ||||||||||||||    
T  45356 actgaaccatgccaagatgttggaacatcgtatccaacatcatacatgaatatttgttttaga-aaaagtgaagtcaacacacaaatatccaaca 45263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 52315 - 52237
Alignment:
Q  43 gatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||| ||||| | | |||||||  ||||||||||||||||| | |||||||||||| || | ||||||||||||||    
T  52315 gatgttggaacatcgtatccaacatcatacatgaatatttgtttttg-caaaagtgaagccaacacacaaatatccaaca 52237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 11951 - 12044
Alignment:
Q  28 actgaaccatgtcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 122  Q
    |||||||| || ||||||||||  ||||| ||| ||||||| ||| ||| |||||||||||| |||||||| ||  || ||||||||||||||||    
T  11951 actgaaccgtgccaggatgttgaaacatcgtgtccaacatcacacttgattatttgttttag-caaaagtgcagtcaacatacaaatatccaaca 12044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University