View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_high_70 (Length: 238)
Name: NF15735_high_70
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_high_70 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 35029812 - 35029607
Alignment:
| Q |
15 |
aatataaacactaacgcatgttatgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaat |
114 |
Q |
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| T |
35029812 |
aatataaacactaacgcatgttttgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcgagaggcaaat |
35029713 |
T |
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| Q |
115 |
tgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaaca |
214 |
Q |
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| T |
35029712 |
tgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcattcttatacttgttatgttgcttggaagactcaagaaattcaaca |
35029613 |
T |
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| Q |
215 |
cggatg |
220 |
Q |
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|||||| |
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| T |
35029612 |
cggatg |
35029607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 34970472 - 34970310
Alignment:
| Q |
58 |
aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg |
157 |
Q |
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| T |
34970472 |
aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg |
34970373 |
T |
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| Q |
158 |
agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatg |
220 |
Q |
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| T |
34970372 |
agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatg |
34970310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 34952629 - 34952478
Alignment:
| Q |
46 |
agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa |
145 |
Q |
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||||||||| ||||||||||||| | | |||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
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| T |
34952629 |
agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa |
34952530 |
T |
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| Q |
146 |
aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaag |
197 |
Q |
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| T |
34952529 |
aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaag |
34952478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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