View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_high_76 (Length: 202)

Name: NF15735_high_76
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_high_76
NF15735_high_76
[»] chr2 (23 HSPs)
chr2 (47-104)||(36177350-36177407)
chr2 (43-102)||(20650369-20650428)
chr2 (47-101)||(4856709-4856763)
chr2 (48-102)||(14816058-14816112)
chr2 (43-108)||(14489207-14489272)
chr2 (43-108)||(44617993-44618058)
chr2 (52-104)||(12802469-12802521)
chr2 (47-102)||(14489470-14489525)
chr2 (44-105)||(4423418-4423478)
chr2 (44-101)||(14815698-14815755)
chr2 (48-101)||(36176981-36177034)
chr2 (48-108)||(14289259-14289318)
chr2 (43-101)||(15023094-15023152)
chr2 (48-102)||(35500352-35500406)
chr2 (17-103)||(43029024-43029109)
chr2 (44-101)||(4576798-4576854)
chr2 (52-101)||(10522643-10522692)
chr2 (53-98)||(12948892-12948937)
chr2 (49-102)||(12949279-12949332)
chr2 (48-101)||(34679351-34679404)
chr2 (48-80)||(5819761-5819793)
chr2 (52-100)||(20662516-20662564)
chr2 (52-108)||(44077064-44077119)
[»] chr3 (14 HSPs)
chr3 (43-108)||(12759496-12759561)
chr3 (51-111)||(17773160-17773220)
chr3 (51-111)||(19074461-19074521)
chr3 (48-102)||(28204479-28204533)
chr3 (17-102)||(51315714-51315799)
chr3 (53-101)||(14856546-14856594)
chr3 (49-101)||(53254963-53255015)
chr3 (43-102)||(3193037-3193096)
chr3 (52-102)||(3354950-3355000)
chr3 (54-108)||(10732414-10732468)
chr3 (48-102)||(53255285-53255339)
chr3 (44-105)||(50420878-50420939)
chr3 (43-103)||(28712717-28712777)
chr3 (44-104)||(43902529-43902588)
[»] chr8 (18 HSPs)
chr8 (48-104)||(17070904-17070960)
chr8 (48-104)||(17577312-17577368)
chr8 (48-107)||(755897-755956)
chr8 (50-99)||(18092913-18092962)
chr8 (54-102)||(41602878-41602926)
chr8 (50-98)||(42217818-42217866)
chr8 (43-102)||(39889771-39889830)
chr8 (44-110)||(23475615-23475681)
chr8 (49-102)||(756119-756172)
chr8 (43-96)||(22192307-22192360)
chr8 (43-103)||(23702390-23702450)
chr8 (44-107)||(29340762-29340825)
chr8 (48-103)||(35795592-35795647)
chr8 (17-104)||(41487197-41487284)
chr8 (48-102)||(20853377-20853431)
chr8 (53-99)||(42218509-42218555)
chr8 (47-104)||(11289306-11289363)
chr8 (48-104)||(14170419-14170475)
[»] chr7 (22 HSPs)
chr7 (17-105)||(28350112-28350200)
chr7 (43-103)||(46266509-46266569)
chr7 (43-98)||(9500158-9500213)
chr7 (43-105)||(4049977-4050039)
chr7 (43-104)||(48058858-48058919)
chr7 (48-108)||(30283399-30283459)
chr7 (43-110)||(17876413-17876480)
chr7 (43-102)||(23826278-23826337)
chr7 (43-98)||(46265868-46265923)
chr7 (48-102)||(282862-282916)
chr7 (48-102)||(327439-327493)
chr7 (48-102)||(21939335-21939389)
chr7 (44-108)||(9477126-9477190)
chr7 (47-98)||(19645061-19645112)
chr7 (48-103)||(43078064-43078119)
chr7 (50-108)||(14247287-14247345)
chr7 (51-101)||(48059210-48059260)
chr7 (51-108)||(7873895-7873952)
chr7 (48-101)||(10691298-10691351)
chr7 (48-101)||(24679105-24679158)
chr7 (48-108)||(20185176-20185236)
chr7 (49-101)||(29933190-29933242)
[»] chr4 (19 HSPs)
chr4 (43-98)||(37831595-37831650)
chr4 (48-106)||(3369842-3369900)
chr4 (47-113)||(1571387-1571453)
chr4 (43-104)||(23759558-23759619)
chr4 (43-104)||(43074613-43074674)
chr4 (48-112)||(21957528-21957592)
chr4 (43-102)||(6614846-6614905)
chr4 (43-98)||(13825884-13825938)
chr4 (51-102)||(30064364-30064415)
chr4 (48-103)||(35383763-35383818)
chr4 (52-103)||(52865378-52865429)
chr4 (48-102)||(41148164-41148218)
chr4 (44-102)||(53578912-53578970)
chr4 (47-104)||(19909170-19909227)
chr4 (53-102)||(21552923-21552972)
chr4 (53-98)||(41467131-41467176)
chr4 (52-101)||(53831152-53831201)
chr4 (50-102)||(2017051-2017103)
chr4 (43-99)||(20118162-20118218)
[»] chr5 (12 HSPs)
chr5 (48-102)||(6464336-6464390)
chr5 (43-100)||(32391720-32391777)
chr5 (47-103)||(20512459-20512515)
chr5 (48-102)||(2974895-2974949)
chr5 (48-102)||(42585985-42586039)
chr5 (17-102)||(12406040-12406125)
chr5 (52-112)||(128243-128303)
chr5 (43-110)||(36798161-36798228)
chr5 (43-105)||(3999082-3999144)
chr5 (45-103)||(7611072-7611130)
chr5 (48-105)||(42586348-42586405)
chr5 (43-103)||(36798432-36798492)
[»] chr1 (26 HSPs)
chr1 (50-99)||(48441496-48441545)
chr1 (48-100)||(37008218-37008270)
chr1 (52-103)||(3612453-3612504)
chr1 (48-102)||(3814759-3814813)
chr1 (49-103)||(39642198-39642252)
chr1 (52-105)||(46912186-46912239)
chr1 (17-105)||(3377497-3377585)
chr1 (48-104)||(12074953-12075009)
chr1 (48-104)||(12075274-12075330)
chr1 (48-103)||(7579661-7579716)
chr1 (48-107)||(40877006-40877065)
chr1 (48-103)||(46895801-46895856)
chr1 (43-98)||(52321256-52321311)
chr1 (48-102)||(3815057-3815111)
chr1 (49-99)||(13575163-13575213)
chr1 (47-97)||(23953110-23953160)
chr1 (52-98)||(43117258-43117304)
chr1 (52-102)||(51549405-51549455)
chr1 (43-80)||(5287271-5287308)
chr1 (48-100)||(5287835-5287887)
chr1 (43-99)||(18632595-18632651)
chr1 (43-99)||(23891662-23891718)
chr1 (54-102)||(25486479-25486527)
chr1 (48-80)||(35067050-35067082)
chr1 (53-101)||(46895437-46895485)
chr1 (44-108)||(49696922-49696986)
[»] scaffold0725 (1 HSPs)
scaffold0725 (54-102)||(6698-6746)
[»] chr6 (12 HSPs)
chr6 (48-102)||(3579594-3579648)
chr6 (47-101)||(30369784-30369838)
chr6 (44-80)||(6840213-6840249)
chr6 (48-99)||(2018578-2018629)
chr6 (43-98)||(7504878-7504933)
chr6 (54-109)||(9070136-9070191)
chr6 (48-103)||(12766475-12766530)
chr6 (54-104)||(18604101-18604151)
chr6 (53-102)||(238929-238978)
chr6 (54-103)||(12798725-12798774)
chr6 (48-101)||(28574567-28574620)
chr6 (48-108)||(12203885-12203945)
[»] scaffold1458 (1 HSPs)
scaffold1458 (43-102)||(1470-1529)
[»] scaffold0515 (1 HSPs)
scaffold0515 (43-102)||(3638-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (43-102)||(3638-3697)
[»] scaffold0092 (1 HSPs)
scaffold0092 (47-102)||(37783-37838)
[»] scaffold0062 (1 HSPs)
scaffold0062 (17-108)||(46069-46160)
[»] scaffold0001 (2 HSPs)
scaffold0001 (43-102)||(405450-405508)
scaffold0001 (44-104)||(405065-405125)
[»] scaffold0690 (1 HSPs)
scaffold0690 (48-80)||(4303-4335)


Alignment Details
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 36177350 - 36177407
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  36177350 aggggccaaaatcgcaacttcttgaaacttaaggggctaaaactgttattaagccttt 36177407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 20650428 - 20650369
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||    
T  20650428 cttagggggccaaaatctcaacttcttgaaacttagggggctaaaactgctatgaagcct 20650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 4856763 - 4856709
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||||||||||    
T  4856763 aggggtcaaaatcgcaacttcttgaaacataaggggccaaaactgctattaagcc 4856709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 14816058 - 14816112
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||||| || || || ||||||||||||||||||    
T  14816058 ggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 14816112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 14489272 - 14489207
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||||||||||| |||||| | |||| |||  | |||||||||||||||||||||||||||    
T  14489272 cttaaggggccaaaatcacaacttttggaaagttagagggctaaaactgctattaagcctttattt 14489207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 44617993 - 44618058
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    |||||||| |||||||||||||||||||||| |||  | | |||||||||||||||||||| ||||    
T  44617993 cttaagggaccaaaatcgcaacttcttgaaagttagagggttaaaactgctattaagccttgattt 44618058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 12802469 - 12802521
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    ||||||||||||||||||||||| || || || ||||||||||||||||||||    
T  12802469 ccaaaatcgcaacttcttgaaacatagggagccaaaactgctattaagccttt 12802521  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 14489470 - 14489525
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||| ||||| ||| || || ||||||||||||||||||    
T  14489470 aggggccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcct 14489525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 4423478 - 4423418
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    |||| ||||||||||||||||||||| |||| ||||| || |||||||| ||||||||||||    
T  4423478 ttaaagggccaaaatcgcaacttcttaaaacataagg-gccaaaactgcaattaagccttta 4423418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 14815755 - 14815698
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||||| |||||| |||||||||||||||| || || || |||||||||||||||||    
T  14815755 ttaagggaccaaaaccgcaacttcttgaaacatagggggccaaaactgctattaagcc 14815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 36177034 - 36176981
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||| |||||||||||||| |||||||||  | ||||||||||||||||||||    
T  36177034 ggggctaaaatcgcaacttcgtgaaacttagagggctaaaactgctattaagcc 36176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 14289318 - 14289259
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    |||||||||||||||||||| ||| ||||| || |  ||||||||||||||||||||||||    
T  14289318 ggggccaaaatcgcaacttcatgatactta-ggaggaaaaactgctattaagcctttattt 14289259  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 15023094 - 15023152
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||| |||| ||||||| ||||||||||||| ||| || || |||||||||||||||||    
T  15023094 cttagggggtcaaaatcacaacttcttgaaagttagggggccaaaactgctattaagcc 15023152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 35500352 - 35500406
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||||| || ||  | |||||| |||||||||||    
T  35500352 ggggccaaaatcgcaacttcttgaaacatagggccccaaaactactattaagcct 35500406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 43029024 - 43029109
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    ||||||||||||||||||        |||| |||||||||||||||||||  ||||| |||||| || |||||||||||||| ||||    
T  43029024 tagggggcggttttgtagttttttttcttagggggccaaaatcgcaactttgtgaaagttaagg-gcaaaaactgctattaaacctt 43029109  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 4576798 - 4576854
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||||||||||||||||||||| | |||| ||| ||  |||||||||||||||||||    
T  4576798 ttaaggggccaaaatcgcaactt-tggaaagttaggggtctaaaactgctattaagcc 4576854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 10522692 - 10522643
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||| ||||||||||| ||||||||  | |||||||||||||||||    
T  10522692 ccaaaatcacaacttcttgatacttaaggaccaaaaactgctattaagcc 10522643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12948937 - 12948892
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    ||||||||||||||||| ||| ||| || |||||||||||||||||    
T  12948937 caaaatcgcaacttcttaaaatttagggggctaaaactgctattaa 12948892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 12949279 - 12949332
Alignment:
Q  49 gggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||| || |||||||||| ||||||||||   |||||||||||||||||||    
T  12949279 gggccaacattgcaacttctttaaacttaagggattaaaactgctattaagcct 12949332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 34679351 - 34679404
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||||||| ||||||| ||||| ||| || || |||||||||||||||||    
T  34679351 ggggccaaaatcacaacttcgtgaaagttagggggcaaaaactgctattaagcc 34679404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 5819761 - 5819793
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaagg 80  Q
    ||||||||||||||||||| |||||||||||||    
T  5819761 ggggccaaaatcgcaactttttgaaacttaagg 5819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 20662564 - 20662516
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagc 100  Q
    |||||||||||||||||| ||||||| || | ||||||| |||||||||    
T  20662564 ccaaaatcgcaacttctttaaacttagggggttaaaactactattaagc 20662516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 44077119 - 44077064
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    |||||||| |||||||||||||| ||||| || |||| ||| |||||||||||||||    
T  44077119 ccaaaatcacaacttcttgaaacataagg-gccaaaagtgcaattaagcctttattt 44077064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 12759561 - 12759496
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||||||||||||||| ||||||||| ||| || || ||||||| ||||||||||||||||    
T  12759561 cttaaggggccaaaatcgcaatttcttgaaagttagggggcaaaaactgttattaagcctttattt 12759496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 17773220 - 17773160
Alignment:
Q  51 gccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaaa 111  Q
    ||||||||||||||||  ||||| ||| || || |||||||||||||||||||||||||||    
T  17773220 gccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcctttatttaaa 17773160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 19074521 - 19074461
Alignment:
Q  51 gccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaaa 111  Q
    ||||||||||||||||  ||||| ||| || || |||||||||||||||||||||||||||    
T  19074521 gccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcctttatttaaa 19074461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 28204533 - 28204479
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| ||||||||||||||| ||||| |||||| || ||||||||||||||||||    
T  28204533 ggggtcaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcct 28204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 51315714 - 51315799
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||        |||| |||||||||||||||||||   |||| ||| || |||||||||||||||||||||    
T  51315714 tagggggcggttttgtagttttttttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcct 51315799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 14856594 - 14856546
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||||||||||||| ||||| ||| ||||| |||||||||||||||||    
T  14856594 caaaatcgcaacttcgtgaaagttagggtgcgaaaactgctattaagcc 14856546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 53255015 - 53254963
Alignment:
Q  49 gggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||||||||||||||||||||| || || || ||||||| |||||||||    
T  53255015 gggccaaaatcgcaacttcttgaaacatagggggccaaaactgttattaagcc 53254963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 3193037 - 3193096
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||| ||||||||||||||||||||| ||| || |  ||||||||||||||||||    
T  3193037 cttagggggtcaaaatcgcaacttcttgaaagttagggggtgaaaactgctattaagcct 3193096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 3354950 - 3355000
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||||| ||||| || || ||| ||||||||||||||    
T  3354950 ccaaaatcgcaacttcttgatacttagggggccaaatctgctattaagcct 3355000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 10732414 - 10732468
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||||||||||||||| ||||| || |||| ||| ||||| |||||||||    
T  10732414 aaaatcgcaacttcttgaaacataaggggccaaaagtgcaattaaacctttattt 10732468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 53255285 - 53255339
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||||||| |||| || |  || ||||||||||||||||||    
T  53255285 ggggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaagcct 53255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 50420878 - 50420939
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    |||||||| ||||||||||||||| | | ||||| |  || |||||||||||||||||||||    
T  50420878 ttaaggggtcaaaatcgcaacttcataatacttaggaggccaaaactgctattaagccttta 50420939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 28712717 - 28712777
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||| |||||||||||| ||||||| | ||| ||| || || |||||||||||||||||||    
T  28712717 cttagggggccaaaatcacaacttcataaaagttagggggcgaaaactgctattaagcctt 28712777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 43902588 - 43902529
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||| ||||||| | | |||||||| | | |||||||||||||||||||    
T  43902588 ttaaggggccaaaatcacaacttcctaatacttaagg-ggtcaaactgctattaagccttt 43902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 17070960 - 17070904
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  17070960 ggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagccttt 17070904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 17577312 - 17577368
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  17577312 ggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagccttt 17577368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 755956 - 755897
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatt 107  Q
    ||||||||||||||||||||||||||| ||  | || |||||||||||||||||||||||    
T  755956 ggggccaaaatcgcaacttcttgaaacatagagggccaaaactgctattaagcctttatt 755897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18092962 - 18092913
Alignment:
Q  50 ggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  18092962 ggccaaaatcgcaacttcttgtaacttagggggctaaaactgctattaag 18092913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 41602878 - 41602926
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||||    
T  41602878 aaaatcgcaactttttgaaacttagggggctaaaactgctattaagcct 41602926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 42217866 - 42217818
Alignment:
Q  50 ggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||    
T  42217866 ggccaaaatcgcaacttcttaaaacttaaagagctaaaactgctattaa 42217818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 39889830 - 39889771
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||| |||||||| ||||| |||||  || ||||||||||||||||||    
T  39889830 cttaaggggccaaaattgcaacttcgtgaaagttaagaggcgaaaactgctattaagcct 39889771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 23475681 - 23475615
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaa 110  Q
    |||||||| ||||||| |||||||||||||| || || || |||||||| ||||||||||| |||||    
T  23475681 ttaaggggtcaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagcctttttttaa 23475615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 756119 - 756172
Alignment:
Q  49 gggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||| |||| || || || ||||||||||||||||||    
T  756119 gggccaaaatcgcaacttcttaaaacatagggagccaaaactgctattaagcct 756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 22192360 - 22192307
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctatt 96  Q
    |||| |||||||||||||||||||| ||||| |||||| || ||||||||||||    
T  22192360 cttagggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctatt 22192307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 23702390 - 23702450
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||| ||||| ||||||||||||| | |||| ||| || ||||||||||||||||||||||    
T  23702390 cttagggggctaaaatcgcaacttttggaaagttagggggctaaaactgctattaagcctt 23702450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 29340825 - 29340762
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatt 107  Q
    |||||||||||||||||||| || || |||| || || || |||||||||||||| ||||||||    
T  29340825 ttaaggggccaaaatcgcaaattatttaaacatagggggccaaaactgctattaaacctttatt 29340762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 35795592 - 35795647
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||||||||||| |||||||||||||| || || || |||||||| ||||||||||    
T  35795592 ggggccaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagcctt 35795647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 41487284 - 41487197
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    ||||||||||||||||||        |||| |||| ||||||||||||||| ||||| ||  || || ||||||||||||||||||||    
T  41487284 tagggggcggttttgtagttttgtttcttagggggtcaaaatcgcaacttcgtgaaaattcgggggcgaaaactgctattaagccttt 41487197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 20853431 - 20853377
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||||||||||||||  |||| ||| || |||||||||||||||||||||    
T  20853431 ggggtcaaaatcgcaacttcaagaaagttagggggctaaaactgctattaagcct 20853377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 42218509 - 42218555
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    ||||||||||||||||| |||||||| | | ||||||||||||||||    
T  42218509 caaaatcgcaacttcttaaaacttaaagggttaaaactgctattaag 42218555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 11289306 - 11289363
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||| ||| ||||||||||||||||||| || || || ||| ||||||||||||||||    
T  11289306 agggaccagaatcgcaacttcttgaaacatagggggccaaagctgctattaagccttt 11289363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 14170475 - 14170419
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||||||||| |||| || || |  |||||||| |||||||||||    
T  14170475 ggggccaaaatcgcaacttcttaaaacatagggggtcaaaactgcaattaagccttt 14170419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 28350200 - 28350112
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    ||||||||||||||||||        |||| ||||||||||||| |||||| ||||| ||| || ||||||||||||||||||||||||    
T  28350200 tagggggcggttttgtagttttttttcttagggggccaaaatcgtaacttcgtgaaagttagggggctaaaactgctattaagccttta 28350112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 46266509 - 46266569
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||| |||| |||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  46266509 cttaggggggcaaaattgcaacttcttgaaacttagggagctaaaactgctattaagcctt 46266569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 9500158 - 9500213
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||| ||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  9500158 cttaggggaccaaaatcgcaacttcttgaaacttagggggctaaaactgctattaa 9500213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 4049977 - 4050039
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    |||| |||||||||||| ||||||| ||||| |||||| || |||||||||||||||||||||    
T  4049977 cttagggggccaaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagccttta 4050039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 48058919 - 48058858
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    ||||||||||||||||| |||||| |||||||||| || | ||||||||||||||| |||||    
T  48058919 cttaaggggccaaaatctcaacttgttgaaacttagggggttaaaactgctattaatccttt 48058858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 30283459 - 30283399
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||||||||||||||||||||| ||||| |  |||||||| ||||||||| |||||    
T  30283459 ggggccaaaatcgcaacttcttgaaacataaggggtaaaaactgcaattaagcctatattt 30283399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 17876413 - 17876480
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaa 110  Q
    |||||||||||||||||| |||||| ||||| ||| || |  ||||||||||||||||||||| ||||    
T  17876413 cttaaggggccaaaatcgtaacttcgtgaaagttagggggtgaaaactgctattaagcctttaattaa 17876480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 23826278 - 23826337
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||| ||||| ||| ||  | ||||||||||||||||||    
T  23826278 cttaaggggccaaaatcgcaacttcgtgaaagttaggggacaaaaactgctattaagcct 23826337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 46265923 - 46265868
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||| |||||||||||| ||||||||| |||||||||| | |||||||||||||||    
T  46265923 cttagggggccaaaatcccaacttcttaaaacttaaggggttaaaactgctattaa 46265868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 282862 - 282916
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||||| || |  || ||||||||||||||||||    
T  282862 ggggccaaaatcgcaacttcttgaaacataggaggccaaaactgctattaagcct 282916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 327439 - 327493
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||||| || || || | ||||||||||||||||    
T  327439 ggggccaaaatcgcaacttcttgaaacatagggggccacaactgctattaagcct 327493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 21939335 - 21939389
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||||| ||| ||||| || || ||||||||||||||||||    
T  21939335 ggggccaaaatcgcaacttcgtgatacttagggggccaaaactgctattaagcct 21939389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 9477190 - 9477126
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||| ||||||||||||| || |||| || || || |||||||||||||| |||||||||    
T  9477190 ttaaggggctaaaatcgcaactttttaaaacatagggggccaaaactgctattaaacctttattt 9477126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 19645061 - 19645112
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    ||||||||||||||||||||| ||||| |||||| || |||| |||||||||    
T  19645061 aggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaattgctattaa 19645112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 43078064 - 43078119
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||||||||||||||||||||||||||  | || || ||| |||||||||||||||    
T  43078064 ggggccaaaatcgcaacttcttgaaacagagggggccaaatctgctattaagcctt 43078119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 14247345 - 14247287
Alignment:
Q  50 ggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    |||||||||| ||||||| ||||| ||| |  || ||||||||||||||||||||||||    
T  14247345 ggccaaaatcacaacttcgtgaaagttaggtggcgaaaactgctattaagcctttattt 14247287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 48059210 - 48059260
Alignment:
Q  51 gccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||||||| ||||||||| ||||||| ||  |||||||||||||||||||    
T  48059210 gccaaaatcacaacttcttaaaacttaggggcctaaaactgctattaagcc 48059260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 7873895 - 7873952
Alignment:
Q  51 gccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||| ||| |||||||||| || || || |||||||| |||||||||||||||    
T  7873895 gccaaaatcacaatttcttgaaacatagggggccaaaactgcaattaagcctttattt 7873952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 10691351 - 10691298
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||||||||||||||||||||||||| || || || |||| ||| ||||||||    
T  10691351 ggggccaaaatcgcaacttcttgaaacatagggggccaaaattgcaattaagcc 10691298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 24679105 - 24679158
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||||||||||| |||||||||| || || || ||||||| |||||||||    
T  24679105 ggggccaaaatcgcaatttcttgaaacatagggggccaaaactgttattaagcc 24679158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 20185176 - 20185236
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    |||| ||||||||||||||| ||||| ||| || || |||||| ||||||| |||||||||    
T  20185176 ggggtcaaaatcgcaacttcgtgaaagttagggggcgaaaactactattaatcctttattt 20185236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 29933242 - 29933190
Alignment:
Q  49 gggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||||||||||||||||||||| || |  |  |||||||||||||||||    
T  29933242 gggccaaaatcgcaacttcttgaaacataggaggtcaaaactgctattaagcc 29933190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 37831650 - 37831595
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||| |||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  37831650 cttagggggccaaaatcgcaacttcttaaaacttagggggctaaaactgctattaa 37831595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 3369900 - 3369842
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttat 106  Q
    |||||||||||||||||||||||| ||||| || || ||||||| ||||||||||||||    
T  3369900 ggggccaaaatcgcaacttcttgatacttagggggcaaaaactgatattaagcctttat 3369842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 1571453 - 1571387
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaaata 113  Q
    ||||| |||||||||||||| |  ||| ||| |||| ||||||||||||||||||||||||| ||||    
T  1571453 agggggcaaaatcgcaacttttgtaaagttagggtgttaaaactgctattaagcctttattttaata 1571387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 23759619 - 23759558
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    ||||||||||||||||||||||||  ||||| ||| || || |||||| |||||||||||||    
T  23759619 cttaaggggccaaaatcgcaactttatgaaagttagggggcgaaaactactattaagccttt 23759558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 43074674 - 43074613
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||| |||||||||||||||||||| ||||| ||| || || |||| |||||||||||||||    
T  43074674 cttatggggccaaaatcgcaacttcgtgaaagttagggggcgaaaattgctattaagccttt 43074613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 21957592 - 21957528
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaaat 112  Q
    |||| ||||||||||||||   |||| ||| || |||||||||| ||||||||||||||||||||    
T  21957592 ggggtcaaaatcgcaactttgagaaagttagggagctaaaactgatattaagcctttatttaaat 21957528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 6614905 - 6614846
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||| ||||||||||||||||| ||||| ||||||  | |||| |||||||||||||    
T  6614905 cttaaggagccaaaatcgcaacttcgtgaaagttaagggtcgaaaaatgctattaagcct 6614846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 13825938 - 13825884
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||    
T  13825938 cttaggggcccaaaatcgcaacttcttaaaactt-aggggctaaaactgctattaa 13825884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 30064364 - 30064415
Alignment:
Q  51 gccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||| ||||||| || || |||||| |||||||||||    
T  30064364 gccaaaatcgcaacttcttaaaacttagggagccaaaactactattaagcct 30064415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 35383818 - 35383763
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||||||||||| ||||||| ||||| ||| || || |||||||||||||||||||    
T  35383818 ggggccaaaatcacaacttcgtgaaagttagggggcgaaaactgctattaagcctt 35383763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 52865429 - 52865378
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||||||||||||||||| ||||||| || ||| ||||||||||||| ||||    
T  52865429 ccaaaatcgcaacttcttaaaacttatggggctgaaactgctattaaacctt 52865378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 41148218 - 41148164
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||| ||||||| ||||||||||||| || || || ||||||||||||||||||    
T  41148218 ggggctaaaatcggaacttcttgaaacatagggggccaaaactgctattaagcct 41148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 53578912 - 53578970
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||| |||||||||||||||| |||| || || || ||||| ||||||||||||    
T  53578912 ttaaggggctaaaatcgcaacttcttaaaacatagggggccaaaacggctattaagcct 53578970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 19909227 - 19909170
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    ||||||||||||||||||||   |||| ||| || | |||||||||||||||||||||    
T  19909227 aggggccaaaatcgcaactttgagaaagttagggggttaaaactgctattaagccttt 19909170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 21552923 - 21552972
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||| ||||||||||||| || | ||| ||||||||||||||||||    
T  21552923 caaaatcgtaacttcttgaaacataggttgccaaaactgctattaagcct 21552972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 41467176 - 41467131
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||||||| ||||| || ||||||| ||||||||||||||||||||    
T  41467176 caaaatcgtaactttttaaaacttagggtgctaaaactgctattaa 41467131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 53831201 - 53831152
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||||||||||||| |||| || || || |||||||||||||||||    
T  53831201 ccaaaatcgcaacttcttaaaacatagggggccaaaactgctattaagcc 53831152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 2017051 - 2017103
Alignment:
Q  50 ggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||   |||| ||| || |||||||||||||||||||||    
T  2017051 ggccaaaatcgcaactttaggaaagttatggggctaaaactgctattaagcct 2017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 20118162 - 20118218
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    ||||||||||||||||| ||||||  | ||| |||||| ||||||| ||||||||||    
T  20118162 cttaaggggccaaaatcacaactttataaaagttaaggggctaaaattgctattaag 20118218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 6464336 - 6464390
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||||| || || || ||||||||||||||||||    
T  6464336 ggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 6464390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 32391777 - 32391720
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagc 100  Q
    ||||||||||||||||| ||||||| ||||| |||||| || ||||||||||||||||    
T  32391777 cttaaggggccaaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagc 32391720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 20512459 - 20512515
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    ||||||||||||||||||||| ||||| |||||  || |||||||||||||||||||    
T  20512459 aggggccaaaatcgcaacttcgtgaaagttaagaggcgaaaactgctattaagcctt 20512515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 2974895 - 2974949
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||||| ||||| ||| || || ||||||||||||||||||    
T  2974895 ggggccaaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagcct 2974949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 42586039 - 42585985
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||||||||||||||||||||| || || || ||||||||||||||||||    
T  42586039 ggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 42585985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 12406125 - 12406040
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||        |||| |||||||||||||||||||   |||| ||| || |||||||||||||||||||||    
T  12406125 tagggggcggttttgtagttttctttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcct 12406040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 128303 - 128243
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaaat 112  Q
    ||||||| ||||||||||||||| || || |  ||||||||||||||||||||| ||||||    
T  128303 ccaaaattgcaacttcttgaaacatagggggtcaaaactgctattaagcctttaattaaat 128243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 36798228 - 36798161
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatttaa 110  Q
    |||| ||||||||||| |||||||    ||| ||||||  ||||||||||||||||||||||||||||    
T  36798228 cttagggggccaaaattgcaactttggaaaagttaagggtctaaaactgctattaagcctttatttaa 36798161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 3999144 - 3999082
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    |||| |||| ||||||||||||||| ||||| ||| || || |||||||||||||| ||||||    
T  3999144 cttagggggtcaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaaaccttta 3999082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 7611130 - 7611072
Alignment:
Q  45 taaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    ||||||||||||||||||||||||| |||| || || | ||||||||| ||| ||||||    
T  7611130 taaggggccaaaatcgcaacttcttaaaacatagggagttaaaactgcaattgagcctt 7611072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 42586348 - 42586405
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    |||||||||||||||||||||  |||| |  || || |||||||||||||||||||||    
T  42586348 ggggccaaaatcgcaacttctgtaaacatggggggccaaaactgctattaagccttta 42586405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 36798432 - 36798492
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||| ||| |||||||||||||||   |||| ||| || ||||||||||||||||||||||    
T  36798432 cttaggggaccaaaatcgcaactttgagaaagttagggggctaaaactgctattaagcctt 36798492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 48441496 - 48441545
Alignment:
Q  50 ggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  48441496 ggccaaagtcgcaacttcttgaaacttaaagagctaaaactgctattaag 48441545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 37008270 - 37008218
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagc 100  Q
    ||||||||||||||||||||||||||| || || || ||||||||||||||||    
T  37008270 ggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagc 37008218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 3612453 - 3612504
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||||||    
T  3612453 ccaaaatctcaacttcttgaaacttaggggactaaaactgctattaagcctt 3612504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 3814813 - 3814759
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||| |||||||||||||| || || |||||| ||||||||||||||    
T  3814813 ggggccaaaatcacaacttcttgaaacatagggggctaaatctgctattaagcct 3814759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 39642252 - 39642198
Alignment:
Q  49 gggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    ||||||||||||||||||| ||||| ||| || || |||||||||||||||||||    
T  39642252 gggccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcctt 39642198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 46912239 - 46912186
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    |||||||||||||||| ||||| |||||| || |||||||||||||| ||||||    
T  46912239 ccaaaatcgcaacttcgtgaaagttaaggagcgaaaactgctattaaaccttta 46912186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 3377585 - 3377497
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttta 105  Q
    ||||||||||||||||||        |||| |||||||||||||||||||    ||| ||| || ||||||||||||||||||||||||    
T  3377585 tagggggcggttttgtagttttttttcttagggggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagccttta 3377497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 12075009 - 12074953
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||| |||||||||||||||||||||| || || || ||||||||||||||| ||||    
T  12075009 ggggtcaaaatcgcaacttcttgaaacatagggagccaaaactgctattaagtcttt 12074953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 12075274 - 12075330
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||||||||  |||| || || || ||||||||||||||||||||    
T  12075274 ggggccaaaatcgcaacttctgtaaacatagggggccaaaactgctattaagccttt 12075330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 7579716 - 7579661
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    ||||||||||||||||||| | |||| |||||| | ||||||||||||||| ||||    
T  7579716 ggggccaaaatcgcaacttttggaaagttaaggggttaaaactgctattaaacctt 7579661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 40877006 - 40877065
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttatt 107  Q
    ||||||||||||||||||||||| ||| || || || |||||||| |||||| |||||||    
T  40877006 ggggccaaaatcgcaacttcttggaacatagggggccaaaactgcaattaagtctttatt 40877065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 46895801 - 46895856
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||| |||||||||||||||||||||| || || || |||||||| ||||||||||    
T  46895801 ggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgcaattaagcctt 46895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 52321311 - 52321256
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    ||||||| || |||||||||||||||| |||||| ||| | |||||||||||||||    
T  52321311 cttaaggagctaaaatcgcaacttcttaaaacttgaggggttaaaactgctattaa 52321256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 3815057 - 3815111
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||||||||||||||| || ||    ||||||||||||||||||    
T  3815057 ggggccaaaatcgcaacttcttgaaacataggggttcaaaactgctattaagcct 3815111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 13575163 - 13575213
Alignment:
Q  49 gggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    |||||||||||||| |||| ||| ||||| || ||||||||||||||||||    
T  13575163 gggccaaaatcgcatcttcctgatacttagggggctaaaactgctattaag 13575213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 23953110 - 23953160
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctatta 97  Q
    ||||| |||||||||||||||||||||| || || || |||||||||||||    
T  23953110 aggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctatta 23953160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 43117304 - 43117258
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    ||||||||||||||||||||||| || |  |||||||||||||||||    
T  43117304 ccaaaatcgcaacttcttgaaacataggtggctaaaactgctattaa 43117258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 51549405 - 51549455
Alignment:
Q  52 ccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||||||||||| || || |||| ||| |||||||||    
T  51549405 ccaaaatcgcaacttcttgaaacttagggggccaaaattgcaattaagcct 51549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 5287308 - 5287271
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaagg 80  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  5287308 cttaaggggccaaaatcgcaacttcgtgaaagttaagg 5287271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 5287835 - 5287887
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagc 100  Q
    |||||||||||||||||||   |||| |||||| | |||||||||||||||||    
T  5287835 ggggccaaaatcgcaactttgagaaagttaaggggttaaaactgctattaagc 5287887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 18632595 - 18632651
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    |||||| |||||||||||||||||| | ||| ||| || || |||||||||||||||    
T  18632595 cttaagaggccaaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaag 18632651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 23891718 - 23891662
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    |||| |||||||||||| ||||||| ||||| ||| || || |||||||||||||||    
T  23891718 cttagggggccaaaatcacaacttcgtgaaagttagggagcgaaaactgctattaag 23891662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 25486479 - 25486527
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||| ||||| ||| || || ||||||||||||||||||    
T  25486479 aaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagcct 25486527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 35067050 - 35067082
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaagg 80  Q
    ||||||||||||||||||| |||||||||||||    
T  35067050 ggggccaaaatcgcaactttttgaaacttaagg 35067082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 46895485 - 46895437
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    |||||||||||||||||||||  || || || |||||||||||||||||    
T  46895485 caaaatcgcaacttcttgaaatatagggggccaaaactgctattaagcc 46895437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 49696922 - 49696986
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||| | |||||| |||||||||||||| || || || |||| ||| |||||||||||||||    
T  49696922 ttaagggtctaaaatcacaacttcttgaaacatagggggccaaaaatgcaattaagcctttattt 49696986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 6698 - 6746
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||||    
T  6698 aaaatcgcaacttgttgaaacttagggggctaaaactgctattaagcct 6746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 3579648 - 3579594
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||||||||||||||||||| ||||| ||||||  | ||||||||||||||||||    
T  3579648 ggggccaaaatcgcaacttcgtgaaagttaagggacgaaaactgctattaagcct 3579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 30369838 - 30369784
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||| ||||||||||||||||| |||| ||||| || |||||||||||||||||    
T  30369838 aggggacaaaatcgcaacttcttaaaacataaggggccaaaactgctattaagcc 30369784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 6840249 - 6840213
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaagg 80  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6840249 ttaaggggccaaaatcgcaactttttgaaacttaagg 6840213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 2018578 - 2018629
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaag 99  Q
    ||||||||||||||||||||||||||| ||||| || |||| ||| ||||||    
T  2018578 ggggccaaaatcgcaacttcttgaaacataaggggccaaaagtgcaattaag 2018629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 7504878 - 7504933
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaa 98  Q
    |||||||||||||||| ||||||||||||||  || || || ||||||||||||||    
T  7504878 cttaaggggccaaaattgcaacttcttgaaatatagggggccaaaactgctattaa 7504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 9070136 - 9070191
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattta 109  Q
    ||||||||||||||||||||| || || || |||| ||||||||||||||| ||||    
T  9070136 aaaatcgcaacttcttgaaacatagggggccaaaaatgctattaagccttttttta 9070191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 12766475 - 12766530
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    |||||||||||||||||||| ||||| ||| || |  |||||||||||||||||||    
T  12766475 ggggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcctt 12766530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 18604151 - 18604101
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||||||||||||| ||||||| || ||||||| || ||||||||||||    
T  18604151 aaaatcgcaacttcttaaaacttagggagctaaaaatgatattaagccttt 18604101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 238978 - 238929
Alignment:
Q  53 caaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||||||||||||| ||||| ||| || || ||||||||||||||||||    
T  238978 caaaatcgcaacttcgtgaaaattagggggcgaaaactgctattaagcct 238929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 12798774 - 12798725
Alignment:
Q  54 aaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctt 103  Q
    ||||||||||||||||||||  || || || |||||||||||||||||||    
T  12798774 aaaatcgcaacttcttgaaatatagggggccaaaactgctattaagcctt 12798725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 28574567 - 28574620
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcc 101  Q
    ||||||||||||||||||||||||||| || || || |||| ||| ||||||||    
T  28574567 ggggccaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaagcc 28574620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 12203945 - 12203885
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    |||| |||||||||||||||||||||| || || || |||| ||| ||||| |||||||||    
T  12203945 ggggtcaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaaacctttattt 12203885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 1529 - 1470
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||||||||||| ||||||  ||||| ||| || |||||||||||||||||||||    
T  1529 cttagggggccaaaatctcaactttgtgaaagttagggggctaaaactgctattaagcct 1470  T

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Target: scaffold0515 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 3697 - 3638
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||||||||||||||||||   |||| ||| || |||||||||||||||||||||    
T  3697 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcct 3638  T

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Target: scaffold0306 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 3697 - 3638
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||||||||||||||||||   |||| ||| || |||||||||||||||||||||    
T  3697 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcct 3638  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 37838 - 37783
Alignment:
Q  47 aggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    ||||| ||||||||||||||| ||| ||||| || |||||||||||| ||||||||    
T  37838 aggggtcaaaatcgcaacttcctgatacttagggggctaaaactgctgttaagcct 37783  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 46160 - 46069
Alignment:
Q  17 tagggggcggttttgtagnnnnnnnncttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcctttattt 108  Q
    ||||||||||||||||||        |||| ||||  |||||||||||||| ||||| ||| || || ||||||||||| ||||||||||||    
T  46160 tagggggcggttttgtagtttcttttcttagggggttaaaatcgcaacttcgtgaaagttagggggcgaaaactgctataaagcctttattt 46069  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 405450 - 405508
Alignment:
Q  43 cttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagcct 102  Q
    |||| |||| ||||||||||||||||||||||||  || | |||||||||||||||||||    
T  405450 cttagggggtcaaaatcgcaacttcttgaaactt-gggagttaaaactgctattaagcct 405508  T

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Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 405125 - 405065
Alignment:
Q  44 ttaaggggccaaaatcgcaacttcttgaaacttaaggtgctaaaactgctattaagccttt 104  Q
    |||||| | |||||||  |||||||| ||||||| ||  ||||||||||||||||||||||    
T  405125 ttaaggagtcaaaatcataacttcttaaaacttaggggactaaaactgctattaagccttt 405065  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 4335 - 4303
Alignment:
Q  48 ggggccaaaatcgcaacttcttgaaacttaagg 80  Q
    ||||||||||||||||||| |||||||||||||    
T  4335 ggggccaaaatcgcaactttttgaaacttaagg 4303  T

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