View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_10 (Length: 634)
Name: NF15735_low_10
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 620
Target Start/End: Original strand, 38526086 - 38526657
Alignment:
| Q |
16 |
aaaaccatggtttattcctatccaatgacggtacaag--ttttttagaaatggttaggggataaaagcagctatatttgaaccaacgcttttgggacctc |
113 |
Q |
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| T |
38526086 |
aaaaccatggtttattcctatccacagacagtacaagagttttttagaaatggttaggggataaaagcagctatatttgaaccaacgcttttgggacctc |
38526185 |
T |
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| Q |
114 |
tgatggataggtttctggctttagagcttttgcccttttggaatgaattccaacttttacaaaaacaaaaactgtcgaggcttagaacacaatggttagg |
213 |
Q |
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| T |
38526186 |
tgatggataggtttctggctttagagcttttgcccttttggaatgaattccaacttttacaaaaacaaaaactgccgaggcttagaacacaatggttagg |
38526285 |
T |
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| Q |
214 |
aagtcatcttctccaatgagaagttctgtataaatataaattaaaaagaaaagacatccacctatgagaagttatatatgaatataaactnnnnnnnnnn |
313 |
Q |
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| T |
38526286 |
aagtcgtcttctccaatga-----------------taaatttaaaacaaaagatatccacctatgagaagttatatatgaatataaactaaaaacaaaa |
38526368 |
T |
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| Q |
314 |
nntatccacctagcatgcaacaaaaattttaataagcattgtgattaagaaagttcttgacaaaagattaaactaactgagcctcaatagatccaatacc |
413 |
Q |
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| T |
38526369 |
aatatccacctagtatgcgacaaattttttaataagcatagtgattaagaaagttcttgacaaaagattaaactaactga------------------cc |
38526450 |
T |
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| Q |
414 |
aaccacatgcctgctttttaccccagcaatttttgccggaatgtggaaggggccgtaacaatttcacaagttccttggtctcttccattcaagtgagtag |
513 |
Q |
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| T |
38526451 |
aaccacatgcctgctttttaccccagcaatttttgccggcatgtggaaggggccgtaacaatttcacaagttccttggtctcttccattcaagtgagtag |
38526550 |
T |
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| Q |
514 |
attggaccacaaggttaagacctagtgcttccttttcttaagttgtgattttccagctttctttgtattgacatcagaggatagctggatttgctttgat |
613 |
Q |
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| T |
38526551 |
attggaccacaaggttaagacctagtgcttccttttcttaaattgtgattttccagctttctttgtattgacatcagaggatagctggatttgctttgat |
38526650 |
T |
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