View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_11 (Length: 595)
Name: NF15735_low_11
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Original strand, 46290272 - 46290843
Alignment:
| Q |
19 |
tctctgtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaatcaaacaaacaatcacacaattaaattaattaaatacat |
118 |
Q |
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| T |
46290272 |
tctcagtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaatcaaacaaacaatcacacaattaaattaattaaacacat |
46290371 |
T |
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| Q |
119 |
aa-gcttagaagatattaaaacaatgacgcgacctgcttctttgttgggaacagttacatatacaacgatacttggaacagtggtgttattggtattccc |
217 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290372 |
aaagcttagaagatattaaaacaatcacgcgacctgcttctttgttgggaacagttacatatacaacgatacttggaacagtggtgttattggtattccc |
46290471 |
T |
|
| Q |
218 |
ttccattctaatgaaattgctactctttgttgaaaacctgctactcaatttggatctgaaacaaaacaacagaagcaattcaacaaaacatatagacaga |
317 |
Q |
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| T |
46290472 |
ttccattctgatgaaattgctactctttgttgaaaacctgctactcaatttggatctgaaacaaaacaacagaagcaattcaacaaaacatatagacaga |
46290571 |
T |
|
| Q |
318 |
tagcaatgaatagaatttgagattga----acgcacgcactctgttttgagggcagaggaatacaagggtgtgtagagattggtgagtcccaaagtgagc |
413 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46290572 |
tagaaatgaatagaatttgagattgaacgcacgcacgcactctgttttgagggcagaggaatacaagggtgtgtagaaattggtgagtcccaaagtgagc |
46290671 |
T |
|
| Q |
414 |
atgcaaaacgcgcctacaatgggtaaacgacgtcgtagcgtagagggcgaggagaatattctggaagtggaagaagccattttagttgagaacatcttta |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290672 |
atgcaaaacgcgcctacaatgggtaaacgacgtcgtagcgtagagggcgaggagaagattctggaagtggaagaagccattttagttgagaacatcttta |
46290771 |
T |
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| Q |
514 |
tt---ataaggtgttatgcctctctattaactctcattctgctcctttacttgatgcgctccttttcatctc |
582 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290772 |
ttataataaggtgttatgcctctctattaactctcattctgctcctttacttgatgcgctccttttcatctc |
46290843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 484
Target Start/End: Original strand, 2528086 - 2528552
Alignment:
| Q |
21 |
tctgtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaatcaaacaaacaatcacacaattaaa-ttaattaaatacata |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
2528086 |
tctgtgacaatgctttcagccaatttcttacctgcacaa--ccaataacatgcatcaaatcaaacaaacaatcacaacattaaaattaattaaatacata |
2528183 |
T |
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| Q |
120 |
agcttagaaga--tattaaaacaatgacgcgacctgcttctttgttgggaacagttacatatacaacgatacttggaacagtggtgttattggtattccc |
217 |
Q |
| |
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||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
2528184 |
agccaagaagagatattaaaacaatcacgcgacctgcttctttgttgggaacagtaacatatacaaggatgcttggaacagtggtgttatttgtattcct |
2528283 |
T |
|
| Q |
218 |
ttcc-----attctaatgaaattgctactctttgttgaaaacctgctactcaatttggatctgaaacaaaacaacagaagcaattcaacaaaacatatag |
312 |
Q |
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||| ||| |||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
2528284 |
gtccattatattataatgaaattactgttctttgttgaaaacctgctattcaatttagatctgaaacaaaacaagagaagcaattcaacaaaatatatag |
2528383 |
T |
|
| Q |
313 |
acagatagcaatgaatagaatttgagattgaacgcacgcact--ctgttttgagggcagaggaatacaagggtgtgtagagattggtgagtcccaaagtg |
410 |
Q |
| |
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| ||| || ||| |||| ||| | | | |||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
2528384 |
agagaaagaaatcaataaaat-----aacgcatgcacacactccctgttttgagggcagaggaatacaagggtgtgaagagattggagaggcccaaagtg |
2528478 |
T |
|
| Q |
411 |
agcatgcaaaacgcgcctacaatgggtaaacgacgtcgtagcgtagagggcgaggagaatattctggaagtgga |
484 |
Q |
| |
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|||||| ||||||| |||||||||||||||| ||||| |||||| |||| ||| ||| |||| ||||||||| |
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| T |
2528479 |
agcatgaaaaacgcacctacaatgggtaaacaacgtcttagcgtggaggaggagacgaagattccggaagtgga |
2528552 |
T |
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