View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_12 (Length: 583)
Name: NF15735_low_12
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 33678110 - 33678472
Alignment:
| Q |
16 |
cagcttgtttttatgaacgtatgtgttaccatttggttttctagaagatggagtgctgggaaatattcaaaactactcatggaggacaagcgatggcagt |
115 |
Q |
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| T |
33678110 |
cagcttgtttttatgaacgtatgtgttaccatttggttttctagaagatggggtgctgggaaatattcaaaactactcatggaggacaagcgatggcagt |
33678209 |
T |
|
| Q |
116 |
ccatggtaatttcagtggattaattggtaggctgaatggacttgggaaatttattctgatccttgaaattagggtgtctatatcattatgtagatatgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33678210 |
ccatggtaatttcagtggattaattggtaggctgaatggacttggggaatttattctgatccttgaaattagggtgtctatatcattatgtagatatgat |
33678309 |
T |
|
| Q |
216 |
gcttattttagttactgaatccaattatggaggttactatacccttaattagacaaaatatatgatgatgctaaagctagtaggtgactgatgcgagctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33678310 |
gcttattttagttactgaatccaattatggaggttactatacccttaattagacaaaatatatgatgatgctaaagctagtaggtgactgatgcgagctg |
33678409 |
T |
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| Q |
316 |
aacacttccatatgacttgtttcaatacttgtttgactgatactcctgctaaccatttagtta |
378 |
Q |
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| T |
33678410 |
aacacttccatatgacttgtttcaatacttgtttgactgatactcctgctaaccatttagtta |
33678472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 375 - 583
Target Start/End: Original strand, 33680570 - 33680779
Alignment:
| Q |
375 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttga |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
33680570 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaaactgaattcttttatgtggttga |
33680669 |
T |
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| Q |
474 |
aatcaaatcagcctctcaatataagtgtttccatgtaattgtttattattcgctttctcttcaggtgcctatcagtgtggcataaactgtgactttgtac |
573 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
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| T |
33680670 |
aatcaaatcagcctctcagcataagtgtttccacgtaattgtttattattcgctttctctttaggtgcttctcagtgtggcataaactgtgactttgtac |
33680769 |
T |
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| Q |
574 |
atttctgagt |
583 |
Q |
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|||||||||| |
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| T |
33680770 |
atttctgagt |
33680779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 486
Target Start/End: Complemental strand, 20114646 - 20114537
Alignment:
| Q |
378 |
atatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttgaaat |
476 |
Q |
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||||| |||||||| |||||||| | ||||||||||| || | ||| || |||| ||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
20114646 |
atatggaaagaacgaaacaaccgcagcttaaaaaatgtggcttatgatccgtgtaccctttctgacaaagtgaagttgaattcgtttatgtggttgaaaa |
20114547 |
T |
|
| Q |
477 |
caaatcagcc |
486 |
Q |
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|||||||||| |
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| T |
20114546 |
caaatcagcc |
20114537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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