View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_13 (Length: 565)
Name: NF15735_low_13
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 2 - 549
Target Start/End: Original strand, 11849011 - 11849558
Alignment:
| Q |
2 |
gctcaaagttggcaaggtaatgacccttgtcaaggtggttggttagggattgtttgttctagtgggaacatttcagttatcgccttcgagaaaatgggtt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849011 |
gctcaaagttggcaaggtaatgacccttgtcaaggtggttggttagggattgtttgttctagtgggaacatttcagttatcgccttcgagaaaatgggtt |
11849110 |
T |
|
| Q |
102 |
tttccggtagtatatcatctagttttgcaagtcttagttctgtgacgaagttgcttcttgataacaatcatctcaccggcactatacctaaggagcttgc |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849111 |
tttccggtagtatatcatctagttttgcaagtcttagttctgtgacgaagttgcttcttgataacaatcatctcaccggcactatacctaaggagcttgc |
11849210 |
T |
|
| Q |
202 |
tagtatgccgactttgaaagagttagatgtttcgaataatgctttgtatggtcagataccatcgtttcgcggagatgtggttgttaaaaccggtggaaat |
301 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849211 |
tagtatgccggctttgaaagagctagatgtttcgaataatgcattgtatggtcagataccatcgtttcgcggagatgtggttgttaaaaccggtggaaat |
11849310 |
T |
|
| Q |
302 |
cctgatattggaaaggacaaacctcctggctcgcccggctctagttctggaggtgaatataagaagaaaattagtgttggagcaattgttgggattgtga |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849311 |
cctgatattggaaaggacaaacctcctggctcgcccggctctagttctggaggtgaatataagaagaaaattagtgttggagcaattgttgggattgtga |
11849410 |
T |
|
| Q |
402 |
tggggattgtttgtttacttggtgtagtaggggttttggtatttgttatgcgcggtagaagacataataagcgtgatggtaaagttcaaactccaaatgc |
501 |
Q |
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| T |
11849411 |
tggggattgtttgtttacttggtgtagtaggggttttggtatttgttatgcgcggtagaagacataataagtgtgctggtaaagttcaaactccaaatgc |
11849510 |
T |
|
| Q |
502 |
aatagtggtacatcctcgtcattcaggtgatggaaatggcgtgaaaat |
549 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849511 |
aatagtggtacatcctcgtcattcaggtgatggaaatggcgtgaaaat |
11849558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 549
Target Start/End: Complemental strand, 11858136 - 11857571
Alignment:
| Q |
2 |
gctcaaagttggcaaggtaatgacccttgtcaaggtggttggttagggattgtttgttctagtgggaacatttcagttatcgccttcgagaaaatgggtt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| | |||||| ||| | || | ||||| |
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| T |
11858136 |
gctcaaagttggcaaggtaatgacccttgtcaaggtggttggttgggggttgtttgttctagtggcaacattaccattatcgactttcaaaacaagggtt |
11858037 |
T |
|
| Q |
102 |
tttccggtagtatatcatctagttttgcaagtcttagttctgtgacgaagttgcttcttgataacaatcatctcaccggcactatacctaaggagcttgc |
201 |
Q |
| |
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|| | || ||||| || ||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |
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| T |
11858036 |
ttactggcagtatttctcctaattttgcaagtcttagttctttgacgaagttgcttcttgctaacaataatctcaccggtactctacctaaggagcttgc |
11857937 |
T |
|
| Q |
202 |
tagtatgccgactttgaaagagttagatgtttcgaataatgctttgtatggtcagataccatcgtttcgcggagatgtggttgttaaaaccggtggaaat |
301 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
11857936 |
tagtatgcctcaattgaaagagctagatgtttcgaataatttgttgtatggtcatataccgtcgtttcgcggcgatgtggttgttaaaacaggtggaaat |
11857837 |
T |
|
| Q |
302 |
cctgatattggaaaggacaaacctcctggctcgc---------------------ccggctctagttctggaggtgaatataagaagaaaattagtgttg |
380 |
Q |
| |
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||||||||||||||||| ||||||| || ||||| ||| ||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
11857836 |
cctgatattggaaaggataaacctcatgactcgcctgacagccccaaatctagttccgactctagttctggaggtgaagataagaagaaattgagtgttg |
11857737 |
T |
|
| Q |
381 |
gagcaattgttgggattgtgatggggattgtttgtttacttggtgtagtaggggttttggtatttgttatgcgcggtagaagacataataagcgtgatgg |
480 |
Q |
| |
|
|||||||||||||||||||||| || ||| | || ||| ||||| | | |||| |||||||||||||| || ||||||||| ||||||||||||| |
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| T |
11857736 |
gagcaattgttgggattgtgataggaattttatgcttaattggtacact---ggttgtggtatttgttatgtgccatagaagacaaaataagcgtgatga |
11857640 |
T |
|
| Q |
481 |
taaagttcaaactccaaatgcaatagtggtacatcctcgtcattcaggtgatggaaatggcgtgaaaat |
549 |
Q |
| |
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||| || ||||||| ||||| || ||||||||||||||||| || || |||||||||||||||||||| |
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| T |
11857639 |
caaaattgaaactccgaatgcgatcgtggtacatcctcgtcactctggagatggaaatggcgtgaaaat |
11857571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 549
Target Start/End: Original strand, 11835632 - 11836187
Alignment:
| Q |
6 |
aaagttggcaaggtaatgacccttgtcaaggtg---gttggttagggattgtttgttctagtgggaacatttcagttatcgccttcgagaaaatgggttt |
102 |
Q |
| |
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|||| ||| ||||||||||||||||| |||| ||||| ||||||| |||||||| ||| || ||||||||||| ||| | || |||||||| |
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| T |
11835632 |
aaagctggaaaggtaatgacccttgtggtggtgatagttggaaagggattatttgttctgctggtaatgtttcagttatcaactttcaaaacatgggttt |
11835731 |
T |
|
| Q |
103 |
ttccggtagtatatcatctagttttgcaagtcttagttctgtgacgaagttgcttcttgataacaatcatctcaccggcactatacctaaggagcttgct |
202 |
Q |
| |
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||| || |||||||| |||||||||| ||||||||||||||||| | ||| |||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
11835732 |
ttctggcagtatatctcctagttttgctagtcttagttctgtgacaaggttacttcttagtaataatcatctcaccggcactatacctaaggagcttgct |
11835831 |
T |
|
| Q |
203 |
agtatgccgactttgaaagagttagatgtttcgaataatgctttgtatggtcagataccatcgtttcgcggagatgtggttgttaaaaccggtggaaatc |
302 |
Q |
| |
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||||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
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| T |
11835832 |
agtatgccggctttgaaagagatagatgtttcgagtaatgcgttgtatggtcagataccattgtttcgcggagatgttgttgttaaaaccagtggaaatc |
11835931 |
T |
|
| Q |
303 |
ctgatattggaaaggacaaacctcctggctcgccc---------ggctctagttctggaggtgaatataagaagaaaattagtgttggagcaattgttgg |
393 |
Q |
| |
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||||||||||||| || ||||||| || ||||||| ||||||| |||||||||| || ||||||||||| |||||||||||| ||||| || |
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| T |
11835932 |
ctgatattggaaaagataaacctcatgactcgcccaacagccctggctctacttctggaggtaaagataagaagaaagttagtgttggagtcattgtggg |
11836031 |
T |
|
| Q |
394 |
gattgtgatggggattgtttgtttacttggtgtagtaggggttttggtatttgttatgcgcggtagaagacataataagcgtgatggtaaagttcaaact |
493 |
Q |
| |
|
|||||||||||| |||||| | || | || ||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||| |||||||| |
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| T |
11836032 |
gattgtgatgggaattgttggctttataattgctgtaggggttttcgtatttattatgtattgtagaagacataataagcgtgatggcaaaattcaaact |
11836131 |
T |
|
| Q |
494 |
ccaaatgcaatagtggtacatcctcgtcattcaggtgatggaaatggcgtgaaaat |
549 |
Q |
| |
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|| ||||| |||||| ||||||||| |||||| || || |||||||| |||||||| |
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|
| T |
11836132 |
ccgaatgcgatagtgatacatcctcatcattctggagaaggaaatggtgtgaaaat |
11836187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 44797584 - 44797479
Alignment:
| Q |
219 |
aagagttagatgtttcgaataatgctttgtatggtcagataccatcgtttcgcggagatgtggttgttaaaaccggtggaaatcctgatattggaaagga |
318 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||| | |||||||||| || ||||||| |||||| ||||| |||||||||||||| ||||| |
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| T |
44797584 |
aagaattagatgtttctaataataatttgtatggtcgcgtgccatcgtttccaaaaggtgtggttcttaaaattggtgggaatcctgatattgggaagga |
44797485 |
T |
|
| Q |
319 |
caaacc |
324 |
Q |
| |
|
||||| |
|
|
| T |
44797484 |
taaacc |
44797479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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