View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_15 (Length: 548)
Name: NF15735_low_15
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 84 - 530
Target Start/End: Complemental strand, 39305545 - 39305097
Alignment:
| Q |
84 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctcn |
183 |
Q |
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| T |
39305545 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctca |
39305446 |
T |
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| Q |
184 |
nnnnnnnntctaagcattctcttagcacgtcaaaattaattaattatgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
283 |
Q |
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| T |
39305445 |
aaaaaaaatctaagcattctctaagcacgtcaaaattaatta----tgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
39305350 |
T |
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| Q |
284 |
cagaatcctctcatgagtcattggccatcataagtacgtttagtgattctgtttgaatattggcatatgattgaatttggacttgttgtgcatattcac- |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39305349 |
cagaatcctctcatgagtcattggccatcataagtacgttgagtgattctgtttgaatattggcatatgattgaatttagacttgttgtgcatattcact |
39305250 |
T |
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| Q |
383 |
--tcagtgcaacttttgtgcaatttatcattttccttgtcaatattacacga----caatgacaaacaaaagcttcaagatcattttattttgaaaagtg |
476 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305249 |
aattagtgcaacttttgtgcaatttatcattttccttgtcaatattacacgacaatcaatgacaaacaaaagcttcaagatcattttattttgaaaagtg |
39305150 |
T |
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| Q |
477 |
gcnnnnnnncattacattaattgtatgtgtatatatactcttatacgcataaat |
530 |
Q |
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| T |
39305149 |
gc-aaaaaacattacattaattgtatgtgtatatatactcttatacgcataaat |
39305097 |
T |
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