View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_18 (Length: 528)
Name: NF15735_low_18
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 32338068 - 32338482
Alignment:
| Q |
15 |
cataggatgagaggaaacgaccgatctnnnnnnnn-ttacaatgagtattatgtaatctctttgttcctagttataaacaaaaatgaataaaaggattgt |
113 |
Q |
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| T |
32338068 |
cataggatgagaggaaacgaccgatctaaaaaaaaattacaatgagtattatgtaatctctttgttcctagttataaacaaaaatgaatcaaaggaatgt |
32338167 |
T |
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| Q |
114 |
gatgtatttggtccaaaatttgcaaatctttatatcaagatggtagcgagaacagtgaaatctaaacaacaaagaaatacgaagagttttgtgatggcta |
213 |
Q |
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| T |
32338168 |
gatgtatttgatccaaaatttgcaaatctttatatcacgatggtagcgagaacagtgaaatctaaacaacaaagaaatacgaagagttttgtgatggcta |
32338267 |
T |
|
| Q |
214 |
cgagaatggtggctcacgacaaacaacacaataaatttttgtgcgacgagaacaatggctcgcacaagagagaacgattgcataagattggagag-tttt |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32338268 |
cgagaatggttgctcacgacaaacaacacaataaatttttgtgcggcgagaacaatagctcgcacaagagagaacgattgcataagattggagagttttt |
32338367 |
T |
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| Q |
313 |
ttatatcgaaagcaaacagtgagtctttgtacgttcatttgctttctatatgatagggtttagggtttctcatcaaagaagaaggaaattgtgcaaagaa |
412 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
32338368 |
ttttatcgaaagcaaacagtgagtctttgtacgttcatttgctttctatatgataggg--aagagtttctcatcaaagatgaaggaaattgtgcaaagaa |
32338465 |
T |
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| Q |
413 |
aaagatagctgaagagg |
429 |
Q |
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| T |
32338466 |
aaagatagctgaagagg |
32338482 |
T |
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