View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_19 (Length: 518)

Name: NF15735_low_19
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_19
NF15735_low_19
[»] chr2 (6 HSPs)
chr2 (17-497)||(35606637-35607130)
chr2 (351-409)||(39673794-39673852)
chr2 (351-419)||(45231485-45231556)
chr2 (427-487)||(35606191-35606251)
chr2 (351-489)||(39674912-39675053)
chr2 (437-489)||(74842-74894)
[»] chr5 (2 HSPs)
chr5 (237-418)||(37255904-37256087)
chr5 (349-419)||(37253467-37253540)
[»] chr8 (8 HSPs)
chr8 (199-396)||(39977338-39977534)
chr8 (278-409)||(41440528-41440660)
chr8 (266-409)||(19437391-19437526)
chr8 (266-409)||(19573540-19573675)
chr8 (351-398)||(45393945-45393992)
chr8 (349-409)||(29636865-29636926)
chr8 (437-489)||(19437308-19437360)
chr8 (437-489)||(19573457-19573509)
[»] chr3 (4 HSPs)
chr3 (247-409)||(53195633-53195796)
chr3 (270-419)||(22341298-22341449)
chr3 (349-409)||(22341770-22341830)
chr3 (349-408)||(53196928-53196988)
[»] chr7 (6 HSPs)
chr7 (237-409)||(28087555-28087727)
chr7 (237-419)||(44255539-44255723)
chr7 (327-419)||(33735052-33735148)
chr7 (349-419)||(33736015-33736087)
chr7 (349-409)||(28086551-28086611)
chr7 (243-295)||(33735167-33735219)
[»] chr1 (4 HSPs)
chr1 (245-409)||(33851016-33851181)
chr1 (245-409)||(33942797-33942962)
chr1 (237-356)||(35480637-35480747)
chr1 (351-419)||(50269373-50269444)
[»] chr4 (5 HSPs)
chr4 (213-376)||(38230335-38230497)
chr4 (243-375)||(34488363-34488495)
chr4 (351-419)||(47489273-47489344)
chr4 (349-409)||(34486938-34486999)
chr4 (361-409)||(51987162-51987211)
[»] scaffold0210 (4 HSPs)
scaffold0210 (213-370)||(19994-20146)
scaffold0210 (213-370)||(27886-28038)
scaffold0210 (350-472)||(19036-19162)
scaffold0210 (350-472)||(26928-27054)
[»] chr6 (1 HSPs)
chr6 (352-488)||(655523-655663)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 35606637 - 35607130
Alignment:
Q  17 acttcatacatccagaaatcaattagatgagttgaacaagtctaccaatatagacttcaaagaattttatataactgcaacatatgttattgtttacaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35606637 acttcatacatccagaaatcaattagatgagttgaacaagtctaccaatatagacttcaaagaattttatataactgcaacatatgttattgtttacaat 35606736  T
Q  117 tgagaactaagatggtataacagaaaaggagttatgtttgatgtcatgattattttggtattttcaa------------gatacgagaacatgagaagag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||| ||||||||||||||||    
T  35606737 tgagaactaagatggtataacagaaaaggagttatgtttgatgtcatgattattttggtattttcaagatcgtgaagatgatatgagaacatgagaagag 35606836  T
Q  205 aagaagacgaagaaatggggtt-tattacacgggaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctatt 303  Q
    |||||   |||||||||||||| |||| ||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  35606837 aagaa---gaagaaatggggttatattgcactgcaaggaacataataacacttgtattgagtcttttaatcttaaccactgatttaattctaaggctatt 35606933  T
Q  304 aattattcgtgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatcagaggggtcaatgagttgcaaaagggggtaaagt 403  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  35606934 aattattcttgtcattcttttccatttaaattgaattaaataatagtctttgatcggatcaaaatcagaggggtctatgagttgcaaaagggggt-aagt 35607032  T
Q  404 tagggg--tggaaagtga--nnnnnnnaataggaggtcaaaattgctaacatgacaaatatatggagtcaaaaatgcatttaagcctaaagaataacc 497  Q
    ||||||  ||||||||||         |||| |||| ||||||||||| |||| |||| ||| |  ||||||| ||||||||||||||||||||||||    
T  35607033 tagggggttggaaagtgatttttttttaataagaggccaaaattgctaccatggcaaacataagaggtcaaaagtgcatttaagcctaaagaataacc 35607130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 39673852 - 39673794
Alignment:
Q  351 ctttgaccgggtcaaaatcagaggggtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||    
T  39673852 ctttgaccgggtcaaaattaaaggggtctatgagttgcaaaagggggcaaagttagggg 39673794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 45231485 - 45231556
Alignment:
Q  351 ctttgaccgggtcaaaatcaga-ggggtcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    |||||||| ||||||||||||| |||| | ||| ||||||||||||||| ||||||||||  ||||||||||    
T  45231485 ctttgacccggtcaaaatcagagggggcctatgggttgcaaaagggggtgaagttagggggttggaaagtga 45231556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 35606251 - 35606191
Alignment:
Q  427 aataggaggtcaaaattgctaacatgacaaatatatggag-tcaaaaatgcatttaagccta 487  Q
    |||||| || ||||||||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  35606251 aatagggggccaaaattgctaccatgacaaacata-ggagatcaaaaatgcatttaagccta 35606191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 489
Target Start/End: Original strand, 39674912 - 39675053
Alignment:
Q  351 ctttgaccgggtcaaaatcaga-ggggtcaatgagttgcaaaagggggtaaagttagggg--tggaaagtgannnnnnnaataggaggtcaaaattgcta 447  Q
    |||||||| ||||||||||||| |||| | | || |||||||||||||  ||||||||||  ||||||||||       || ||| ||||||||||||||    
T  39674912 ctttgacccggtcaaaatcagaaggggcctaagatttgcaaaagggggagaagttagggggctggaaagtgatttttttaaaagggggtcaaaattgcta 39675011  T
Q  448 acatgacaaatatatggagtcaaaaatgcatttaagcctaaa 489  Q
     ||||| ||| ||| |   |||||| ||||||| ||||||||    
T  39675012 ccatgaaaaacataggtgttcaaaagtgcattttagcctaaa 39675053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 489
Target Start/End: Complemental strand, 74894 - 74842
Alignment:
Q  437 caaaattgctaacatgacaaatatatggagtcaaaaatgcatttaagcctaaa 489  Q
    |||||||||||  ||||||||||||||  ||||||| |||||||||| |||||    
T  74894 caaaattgctacgatgacaaatatatgaggtcaaaagtgcatttaagtctaaa 74842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 237 - 418
Target Start/End: Original strand, 37255904 - 37256087
Alignment:
Q  237 gaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaattt 336  Q
    |||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||| |||||||||||||  | ||||||||||||||||||||||    
T  37255904 gaaggaacacaataacacttatattgagttttttaattttgaccactgatttaatcctaatgctattaattattgatatcattcttttccatttaaattt 37256003  T
Q  337 aattaaataatagcctttgaccgggtcaaaatcagagg-ggtcaatgagttgcaaaagggggtaaagttagggg-tggaaagtg 418  Q
    |||| ||||||||||||||||| ||||||||||||||| || | || ||||||||||||||||||| ||||||| |||||||||    
T  37256004 aattcaataatagcctttgacctggtcaaaatcagaggaggcctataagttgcaaaagggggtaaaattaggggctggaaagtg 37256087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 37253540 - 37253467
Alignment:
Q  349 gcctttgaccgggtcaaaatcaga-ggggtcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    |||||||||||||||||||| ||| |||| | || | |||||||||||||| ||||||||||  ||||||||||    
T  37253540 gcctttgaccgggtcaaaattagagggggcctataaattgcaaaagggggtgaagttagggggttggaaagtga 37253467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 199 - 396
Target Start/End: Complemental strand, 39977534 - 39977338
Alignment:
Q  199 gaagagaagaagacgaagaaatggggtttattacacgggaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaagg 298  Q
    |||||||||| || ||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  39977534 gaagagaaga-gaagaagaaatggggtttattagaccg-aaggaacacaataacacttgtattgaatcttttaatcttgaccgctgatttaatcctaagg 39977437  T
Q  299 ctattaattattcgtgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatcagaggggtc-aatgagttgcaaaagggg 396  Q
    ||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||  ||| |||||||   ||||| | | ||||||||||||||||    
T  39977436 ctattaattattcctatcattctttttcatttaaatttaattcaataatagcctttgttcggatcaaaatagaagggggctactgagttgcaaaagggg 39977338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 278 - 409
Target Start/End: Complemental strand, 41440660 - 41440528
Alignment:
Q  278 accactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatcagagg-gg 376  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||  ||||||||| ||||| |     
T  41440660 accactaatttaatcctaaggctattaattattcctatcattcttttccatttaaatttaattcaataataacctttgacttggtcaaaattagaggaga 41440561  T
Q  377 tcaatgagttgcaaaagggggtaaagttagggg 409  Q
     | ||||||||||||||||||| ||||||||||    
T  41440560 cctatgagttgcaaaagggggtgaagttagggg 41440528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 266 - 409
Target Start/End: Complemental strand, 19437526 - 19437391
Alignment:
Q  266 cttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaa 365  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||         ||||||||||||||||    
T  19437526 cttttaatcttgaccactaatttaatcctaacgctattaattattcctatcattcttttccatttaaatttaatt---------cctttgaccgggtcaa 19437436  T
Q  366 aatcagaggg-gtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    ||||||||||   | | || ||||||||||||| |||||||||||    
T  19437435 aatcagagggaacctaagaattgcaaaagggggcaaagttagggg 19437391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 266 - 409
Target Start/End: Complemental strand, 19573675 - 19573540
Alignment:
Q  266 cttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaa 365  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||         ||||||||||||||||    
T  19573675 cttttaatcttgaccactaatttaatcctaacgctattaattattcctatcattcttttccatttaaatttaatt---------cctttgaccgggtcaa 19573585  T
Q  366 aatcagaggg-gtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    ||||||||||   | | || ||||||||||||| |||||||||||    
T  19573584 aatcagagggaacctaagaattgcaaaagggggcaaagttagggg 19573540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 45393945 - 45393992
Alignment:
Q  351 ctttgaccgggtcaaaatcagaggggtcaatgagttgcaaaagggggt 398  Q
    |||||||| |||||||||  |||||||||||||| |||||||||||||    
T  45393945 ctttgacccggtcaaaataggaggggtcaatgagatgcaaaagggggt 45393992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 29636865 - 29636926
Alignment:
Q  349 gcctttgaccgggtcaaaatcagaggggtcaa-tgagttgcaaaagggggtaaagttagggg 409  Q
    ||||||||||| |||||||| ||||||| ||  |||||||||||||||||| || |||||||    
T  29636865 gcctttgaccgagtcaaaattagagggggcatgtgagttgcaaaagggggtgaaattagggg 29636926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 489
Target Start/End: Complemental strand, 19437360 - 19437308
Alignment:
Q  437 caaaattgctaacatgacaaatatatggagtcaaaaatgcatttaagcctaaa 489  Q
    ||||||||||| ||||||||| ||| || ||||||| ||||||||||| ||||    
T  19437360 caaaattgctaccatgacaaacatagggggtcaaaagtgcatttaagcttaaa 19437308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 489
Target Start/End: Complemental strand, 19573509 - 19573457
Alignment:
Q  437 caaaattgctaacatgacaaatatatggagtcaaaaatgcatttaagcctaaa 489  Q
    ||||||||||| ||||||||| ||| || ||||||| ||||||||||| ||||    
T  19573509 caaaattgctaccatgacaaacatagggggtcaaaagtgcatttaagcttaaa 19573457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 247 - 409
Target Start/End: Complemental strand, 53195796 - 53195633
Alignment:
Q  247 aataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaataa 346  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||| |||||    
T  53195796 aataacacttatattgagtcttttaatcttgaccactcatttaatcctaaggctattaattattcctatcattcttttcaatttcaatttaattcaataa 53195697  T
Q  347 tagcctttgaccgggtcaaaatcagagggg-tcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||  |||||||||||||||||||||||||  | || |||||||||||||||| ||||||||||    
T  53195696 tagtttttgaccgggtcaaaatcagaggggacctataagttgcaaaagggggtgaagttagggg 53195633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 22341449 - 22341298
Alignment:
Q  270 taatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatc 369  Q
    ||||||| |||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||  | | ||||||||||||||||||||     
T  22341449 taatcttgaccactaatttaatcctaaggctattaattattcctatcatt-ttttccatttaaatttaattaacaagtggcctttgaccgggtcaaaatt 22341351  T
Q  370 agaggggtc-aatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    | ||||| |  |||| |||||||| ||||| ||||||||||  ||||||||||    
T  22341350 atagggggcttatgaattgcaaaaaggggtgaagttagggggctggaaagtga 22341298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 22341770 - 22341830
Alignment:
Q  349 gcctttgaccgggtcaaaatcagaggggtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||||||||||| ||||||| || ||||   ||||||||||||||||||| ||||||||||    
T  22341770 gcctttgaccggatcaaaattaggggggcttatgagttgcaaaagggggtgaagttagggg 22341830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 408
Target Start/End: Original strand, 53196928 - 53196988
Alignment:
Q  349 gcctttgaccgggtcaaaatcagag-gggtcaatgagttgcaaaagggggtaaagttaggg 408  Q
    |||||||||| ||||||||||||||  || | ||||||||||||| ||||| |||||||||    
T  53196928 gcctttgaccaggtcaaaatcagagacggcctatgagttgcaaaatggggtgaagttaggg 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 409
Target Start/End: Original strand, 28087555 - 28087727
Alignment:
Q  237 gaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaattt 336  Q
    ||||||| ||||||||||||  |||||||||||||||||| ||||||||||||| ||||||| |||||||||||| | ||||| ||||||||||||||||    
T  28087555 gaaggaatacaataacacttaaattgagtcttttaatcttgaccactgatttaaccctaagggtattaattattcctatcatt-ttttccatttaaattt 28087653  T
Q  337 aattaaataatagcctttgaccgggtcaaaatcaga-ggggtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||| |||||||||||||||| |||||||||| ||| |||| | |||||||||||||| |||  ||||||||||    
T  28087654 aatttaataatagcctttgactgggtcaaaattagagggggcctatgagttgcaaaagtgggcgaagttagggg 28087727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 237 - 419
Target Start/End: Complemental strand, 44255723 - 44255539
Alignment:
Q  237 gaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaattt 336  Q
    ||||||||| |||||||| |  | ||||||||  |||||| |||||| |||||||||||| | |||||||||||  | ||||| ||||||||||||||||    
T  44255723 gaaggaacaaaataacaccttaactgagtcttaaaatctttaccactaatttaatcctaaagttattaattatttctatcatttttttccatttaaattt 44255624  T
Q  337 aattaaataatagcctttgaccgggtcaaaatcagaggggtca-atgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    |||| ||| ||||||||||||||||||||||| ||||||  || |||| |||||||||||||| ||||||||||  ||||||||||    
T  44255623 aattcaatgatagcctttgaccgggtcaaaattagagggagcatatgaattgcaaaagggggt-aagttagggggctggaaagtga 44255539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 33735148 - 33735052
Alignment:
Q  327 atttaaatttaattaaataatagcctttgaccgggtcaaaatcagaggggt--caatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    |||||||||||||| |||||||||||||||   |||||||||||||||||   | || | |||||||||||| | ||||||||||  ||||||||||    
T  33735148 atttaaatttaattcaataatagcctttgatttggtcaaaatcagaggggggcctataaattgcaaaaggggatgaagttaggggattggaaagtga 33735052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 33736015 - 33736087
Alignment:
Q  349 gcctttgaccgggtcaaaatcagaggggtcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    |||||||||| || |||||||||||||| | |||| ||||||||| ||||||| |||||||  ||||||||||    
T  33736015 gcctttgacctggccaaaatcagaggggcctatgaattgcaaaagcgggtaaaattagggggttggaaagtga 33736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 28086611 - 28086551
Alignment:
Q  349 gcctttgaccgggtcaaaatcagaggggtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    ||||||||||  || ||||| ||||||| | || |||||||||||||||| ||||||||||    
T  28086611 gcctttgaccaagtgaaaattagaggggcctataagttgcaaaagggggtgaagttagggg 28086551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 33735219 - 33735167
Alignment:
Q  243 acacaataacacttgtattgagtcttttaatcttcaccactgatttaatccta 295  Q
    |||||||||||||  |||| ||| |||||||||| ||| ||||||||||||||    
T  33735219 acacaataacactcatattcagtgttttaatcttgacccctgatttaatccta 33735167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 245 - 409
Target Start/End: Complemental strand, 33851181 - 33851016
Alignment:
Q  245 acaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaat 344  Q
    |||||||||||   ||||| ||||| || ||| |||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||| |||    
T  33851181 acaataacactaaaattgaatctttaaaacttgaccactgatttaatcctaaggctattaattatttctatcattcttttccatttaaatttaattcaat 33851082  T
Q  345 aatagcctttgaccgggtcaaaatcaga-ggggtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||||||||||||  ||||||||| ||| |||| | ||||||||||||||||||  ||||||||||    
T  33851081 aatagcctttgacttggtcaaaattagagggggcctatgagttgcaaaagggggcgaagttagggg 33851016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 33942797 - 33942962
Alignment:
Q  245 acaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaaat 344  Q
    |||||||||||   ||||| ||||| || ||| |||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||| |||    
T  33942797 acaataacactaaaattgaatctttaaaacttgaccactgatttaatcctaaggctattaattatttctatcattcttttccatttaaatttaattcaat 33942896  T
Q  345 aatagcctttgaccgggtcaaaatcaga-ggggtcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||||||||||||  ||||||||| ||| |||| | ||||||||||||||||||  ||||||||||    
T  33942897 aatagcctttgacttggtcaaaattagagggggcctatgagttgcaaaagggggcgaagttagggg 33942962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 35480637 - 35480747
Alignment:
Q  237 gaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaattt 336  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||        |||||||||||||||||||||| | ||||| |||| |||||||||||    
T  35480637 gaaggaacacaataacacttgaattgagtcttttaatcttgacca--------atcctaaggctattaattattcctatcatt-tttttcatttaaattt 35480727  T
Q  337 aattaaataatagcctttga 356  Q
    |||| |||||||||| ||||    
T  35480728 aattcaataatagccattga 35480747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 50269444 - 50269373
Alignment:
Q  351 ctttgaccgggtcaaaatcagagggg-tcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||||| || |||||||  ||||||||||    
T  50269444 ctttgacccagtcaaaatcagagggggtcactgagttgcaaaagggggtgaaattagggggctggaaagtga 50269373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 38230335 - 38230497
Alignment:
Q  213 gaagaaatggggtttattacacgggaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcg 312  Q
    ||||||||||||||||||| |  | |||| ||||||||||||||  ||||| ||||||||| || |||| |||||||||||||||||||||||||||||     
T  38230335 gaagaaatggggtttattagaaag-aagggacacaataacacttacattgaatcttttaatgttgaccattgatttaatcctaaggctattaattattct 38230433  T
Q  313 tgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatcagagggg 376  Q
    | |||||||||| ||||||||||||||| | ||||||||||||| | ||||||||| |||||||    
T  38230434 tatcattctttttcatttaaatttaatttagtaatagcctttgatcaggtcaaaattagagggg 38230497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 243 - 375
Target Start/End: Original strand, 34488363 - 34488495
Alignment:
Q  243 acacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcgtgtcattcttttccatttaaatttaattaa 342  Q
    |||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |    
T  34488363 acacaataacacttatattgagtcttttaatctcgaccattgatttaatcctaaggctattaattattcctatcattcttttcaatttaaatttaattta 34488462  T
Q  343 ataatagcctttgaccgggtcaaaatcagaggg 375  Q
    | ||||| ||| |||||| |||||| |||||||    
T  34488463 agaatagtcttggaccggatcaaaaccagaggg 34488495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 47489273 - 47489344
Alignment:
Q  351 ctttgaccgggtcaaaatcagaggggtc-aatgagttgcaaaagggggtaaagttagggg--tggaaagtga 419  Q
    |||||||| ||||||||||||||||| |  ||| ||||||||||||||| ||||||||||  ||||||||||    
T  47489273 ctttgacctggtcaaaatcagagggggcttatgggttgcaaaagggggtgaagttagggggttggaaagtga 47489344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 34486999 - 34486938
Alignment:
Q  349 gcctttgaccgggtcaaaatcagaggggtca-atgagttgcaaaagggggtaaagttagggg 409  Q
    |||||||||| | || ||||||||| || || ||||||||||||||||||| ||||||||||    
T  34486999 gcctttgaccagatctaaatcagagagggcatatgagttgcaaaagggggtgaagttagggg 34486938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 51987162 - 51987211
Alignment:
Q  361 gtcaaaatcagagggg-tcaatgagttgcaaaagggggtaaagttagggg 409  Q
    |||||||||||||||| || |||||||||||||||| || ||||||||||    
T  51987162 gtcaaaatcagagggggtctatgagttgcaaaagggtgtgaagttagggg 51987211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 370
Target Start/End: Original strand, 19994 - 20146
Alignment:
Q  213 gaagaaatggggtttattacacgggaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcg 312  Q
    ||||||||| ||||||||| || | |||| |||||||||||||| ||  |||||||| |||||| ||||   ||||||| ||||| |||||||||||||     
T  19994 gaagaaatgaggtttattagacag-aagggacacaataacacttataccgagtcttt-aatcttgacca---atttaattctaagactattaattattcc 20088  T
Q  313 tgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatca 370  Q
    | | | | |||| ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  20089 tataaatatttttcatttaaatttaattcaataataacctttgatcgggtcaaaatca 20146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 370
Target Start/End: Original strand, 27886 - 28038
Alignment:
Q  213 gaagaaatggggtttattacacgggaaggaacacaataacacttgtattgagtcttttaatcttcaccactgatttaatcctaaggctattaattattcg 312  Q
    ||||||||| ||||||||| || | |||| |||||||||||||| ||  |||||||| |||||| ||||   ||||||| ||||| |||||||||||||     
T  27886 gaagaaatgaggtttattagacag-aagggacacaataacacttataccgagtcttt-aatcttgacca---atttaattctaagactattaattattcc 27980  T
Q  313 tgtcattcttttccatttaaatttaattaaataatagcctttgaccgggtcaaaatca 370  Q
    | | | | |||| ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  27981 tataaatatttttcatttaaatttaattcaataataacctttgatcgggtcaaaatca 28038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 472
Target Start/End: Complemental strand, 19162 - 19036
Alignment:
Q  350 cctttgaccgggtcaaaatcagagggg-tcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga-nnnnnnnaataggaggtcaaaattgc 445  Q
    |||||||||||||||||||||||||||  | |||| ||||||||||||  |||||||||||  ||||||||||        |||||| || |||||||||    
T  19162 cctttgaccgggtcaaaatcagaggggacctatgatttgcaaaaggggtaaaagttagggggttggaaagtgattttttttaatagggggccaaaattgc 19063  T
Q  446 taacatgacaaatatatggagtcaaaa 472  Q
    || ||||||||| ||| || |||||||    
T  19062 taccatgacaaacataaggggtcaaaa 19036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 472
Target Start/End: Complemental strand, 27054 - 26928
Alignment:
Q  350 cctttgaccgggtcaaaatcagagggg-tcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga-nnnnnnnaataggaggtcaaaattgc 445  Q
    |||||||||||||||||||||||||||  | |||| ||||||||||||  |||||||||||  ||||||||||        |||||| || |||||||||    
T  27054 cctttgaccgggtcaaaatcagaggggacctatgatttgcaaaaggggtaaaagttagggggttggaaagtgattttttttaatagggggccaaaattgc 26955  T
Q  446 taacatgacaaatatatggagtcaaaa 472  Q
    || ||||||||| ||| || |||||||    
T  26954 taccatgacaaacataaggggtcaaaa 26928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 488
Target Start/End: Complemental strand, 655663 - 655523
Alignment:
Q  352 tttgaccgggtcaaaatcagagggg-tcaatgagttgcaaaagggggtaaagttagggg--tggaaagtga-nnnnnnnaataggaggtcaaaattgcta 447  Q
    |||||||  |||||||||||||||| || ||||||||||||||||||| ||||||||||  | ||||||||        |||||| || |||||||||||    
T  655663 tttgaccctgtcaaaatcagagggggtctatgagttgcaaaagggggtgaagttagggggctagaaagtgattttttttaatagggggccaaaattgcta 655564  T
Q  448 acatgacaaatatatggagtcaaaaatgcatttaagcctaa 488  Q
     |||| |||| ||| || | ||||| |||||||||||||||    
T  655563 ccatggcaaacatagggggccaaaagtgcatttaagcctaa 655523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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