View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_21 (Length: 492)
Name: NF15735_low_21
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 33063814 - 33063339
Alignment:
| Q |
1 |
actatcacgaatcaagagtcggatgaaaatgaaccatacaagttgaagttaaaatgaatatgtgaagatacaacagttgatttcaacttagttggtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33063814 |
actatcacgaatcaagagtcggatgaaaatgaaccagacaagttgaagttaaaatgaatatgtgaagatacaacaattgatttcaacttagttggtaaat |
33063715 |
T |
|
| Q |
101 |
aaataataatttctatgtaaatgataaaactttaagaaatacattttatgaggatgaatgcatcttgagacttggaaagtcgcaaaatttgtgatataca |
200 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063714 |
aaatgataatttctatgtaaatgataaaactt--agaaatacattttatgaggatgaatgcatcttgagacttggaaagtcgcaaaatttgtgatataca |
33063617 |
T |
|
| Q |
201 |
tgattgaaagtcatttctcctctaaatgaggatgagaaagatcctcattccttaagtgatcatatagagagttgatgaatctccaatcatacatatccta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33063616 |
tgattgaaagtcatttctcctctaaatgaggatgagaaagatcctcattccttaagtgatcatatagag--ttgatgaatctccaatcatacatatccta |
33063519 |
T |
|
| Q |
301 |
gattagagacggactaggaggtgacaaaatagctggatttattaaatttgaatttagatgataatgaatagattaaaacaatccatcaatcaagtattcc |
400 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063518 |
gattagagacggactaagaggtgacaaaatagctggatttattaaatttgaatttagatgataatgaatagattaaaacaatccatcaatcaagtattca |
33063419 |
T |
|
| Q |
401 |
ctaaaaactctttaacaaaatttaatacaatacacattctcttaacaaaacaccataacaccagtttgtaaggtgatgat |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33063418 |
ctaaaaactctttaacaaaatttaatacaatacacattctcttaacaaaaccccataacaccagtttgtaaggtgatgat |
33063339 |
T |
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