View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_23 (Length: 470)

Name: NF15735_low_23
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_23
NF15735_low_23
[»] chr5 (4 HSPs)
chr5 (203-363)||(5998185-5998345)
chr5 (35-152)||(5998058-5998175)
chr5 (397-470)||(5998377-5998451)
chr5 (115-185)||(35669978-35670047)
[»] chr7 (1 HSPs)
chr7 (206-346)||(27909525-27909666)
[»] chr4 (3 HSPs)
chr4 (107-165)||(11679748-11679806)
chr4 (107-165)||(11688027-11688085)
chr4 (107-185)||(14337011-14337088)
[»] chr3 (3 HSPs)
chr3 (107-164)||(23502760-23502817)
chr3 (119-185)||(927977-928043)
chr3 (58-102)||(27731736-27731780)
[»] chr8 (4 HSPs)
chr8 (112-195)||(32134340-32134423)
chr8 (214-366)||(15750035-15750187)
chr8 (224-275)||(32645024-32645075)
chr8 (20-105)||(9601856-9601941)
[»] chr1 (2 HSPs)
chr1 (107-138)||(31431052-31431083)
chr1 (115-185)||(30486498-30486567)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 203 - 363
Target Start/End: Original strand, 5998185 - 5998345
Alignment:
Q  203 gtcacatcaattttgtttatggctttactgggtggtggtcaaaccctttgttgtgtttgggtattggctaattgtttcatgtaatctgacagtttgtaat 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998185 gtcacatcaattttgtttatggctttattgggtggtggtcaaaccctttgttgtgtttgggtattggctaattgtttcatgtaatctgacagtttgtaat 5998284  T
Q  303 aattaggggacttcttggttcaccttgtgttaaggagacttcatgttattgttaatatata 363  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  5998285 aattaggggacttcttggtacaccttgtgttaaggagacttcatgtcgttgttaatatata 5998345  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 5998058 - 5998175
Alignment:
Q  35 cataattcatttgagaggaatatatacaagagaaagtatctaaataagaagaaatgaaagaaaggataaaacataaaatatggtgcaatattatccacat 134  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998058 cataattcatttaagaggaatatatacaagagaaagtatctaaataaaaagaaatgaaagaaaggataaaacataaaatatggtgcaatattatccacat 5998157  T
Q  135 aaattgtcggtgttttgt 152  Q
    ||||||||||||||||||    
T  5998158 aaattgtcggtgttttgt 5998175  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 5998377 - 5998451
Alignment:
Q  397 tgttgtatcctaactagtaaa-ttgcttcttcatcttctgaaaatcttcctcttcttcatcctcactattcaaca 470  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  5998377 tgttgtatcctaactagtaaaattgcttcttcatcttctaaaaatcttcctcttcttcatcttcactattcaaca 5998451  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 35670047 - 35669978
Alignment:
Q  115 tggtgcaatattatccacataaattgtcggtgttttgtccaccatataaaacttaaaaagacatttattta 185  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| | ||||||||| ||||||    
T  35670047 tggtgcaatattatccacataaactgtcggtgctttgtccaccacataaaacat-aaaagacatctattta 35669978  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 346
Target Start/End: Original strand, 27909525 - 27909666
Alignment:
Q  206 acatcaattttgtttatggctttactgggtggtggtcaaaccctttgttgtgtttgggtattggctaattgtttcatgtaat-ctgacagtttgtaataa 304  Q
    ||||||| |||||||||||||||| |   |||||||||||| | |||||||||||||  |||||||||| ||||  ||||||  |||||| ||||||| |    
T  27909525 acatcaactttgtttatggctttagttcatggtggtcaaactcattgttgtgtttggacattggctaatcgttttttgtaataatgacaggttgtaatta 27909624  T
Q  305 ttaggggacttcttggttcaccttgtgttaaggagacttcat 346  Q
    ||||||| |||||| || |||||| || |  |||||||||||    
T  27909625 ttaggggccttcttagtacaccttatgctttggagacttcat 27909666  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 11679806 - 11679748
Alignment:
Q  107 ataaaatatggtgcaatattatccacataaattgtcggtgttttgtccaccatataaaa 165  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  11679806 ataaaatgtggtgcaatattatcaacataaattgtcgatgttttgtcctccatataaaa 11679748  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 11688085 - 11688027
Alignment:
Q  107 ataaaatatggtgcaatattatccacataaattgtcggtgttttgtccaccatataaaa 165  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  11688085 ataaaatgtggtgcaatattatcaacataaattgtcgatgttttgtcctccatataaaa 11688027  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 14337011 - 14337088
Alignment:
Q  107 ataaaatatggtgcaatattatccacataaattgtcggtgttttgtccaccatataaaacttaaaaagacatttattta 185  Q
    ||||||| ||||||||||||||||| ||||| | | ||||||||||||||||  ||||| || ||||||||| ||||||    
T  14337011 ataaaatgtggtgcaatattatccatataaactattggtgttttgtccaccacgtaaaa-tttaaaagacatatattta 14337088  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 23502817 - 23502760
Alignment:
Q  107 ataaaatatggtgcaatattatccacataaattgtcggtgttttgtccaccatataaa 164  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||| || |||||    
T  23502817 ataaaatctggtgcaataatattcacataaattgtcggtgttttgtccatcaaataaa 23502760  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 928043 - 927977
Alignment:
Q  119 gcaatattatccacataaattgtcggtgttttgtccaccatataaaacttaaaaagacatttattta 185  Q
    ||||| ||||||||||||||||||| || ||| ||||||||||||||| |||| | |||| ||||||    
T  928043 gcaattttatccacataaattgtcgttgctttttccaccatataaaacataaagaaacatatattta 927977  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 27731780 - 27731736
Alignment:
Q  58 atacaagagaaagtatctaaataagaagaaatgaaagaaaggata 102  Q
    |||||||||||| |||| |||||| | ||||||||||||||||||    
T  27731780 atacaagagaaaatatcaaaataaaatgaaatgaaagaaaggata 27731736  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 32134340 - 32134423
Alignment:
Q  112 atatggtgcaatattatccacataaattgtcggtgttttgtccaccatataaaacttaaaaagaca-tttatttaacgttagtga 195  Q
    |||||||||||||||||||||||||||| | | ||| |||| ||||| ||||||| | |||||||| ||||| ||||||||||||    
T  32134340 atatggtgcaatattatccacataaattattgatgtattgtacaccacataaaacat-aaaagacattttatataacgttagtga 32134423  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 15750187 - 15750035
Alignment:
Q  214 tttgtttatggctttactgggtggtggtcaaaccctttgttgtgtttgggtattggctaattgtttcatgtaa-tctgacagtttgtaataattagggga 312  Q
    ||||||||| | |||| | |||||||||| | ||||||||||||||||| ||||||||||| | ||  |||||   ||||| |||||||| ||||| |      
T  15750187 tttgtttattgatttagtaggtggtggtcgagccctttgttgtgtttggatattggctaatcgctttttgtaacgttgacattttgtaattattagtgtt 15750088  T
Q  313 cttcttggttcaccttgtgttaaggagacttcatgttattgttaatatatacca 366  Q
    |||  |||| |||||||| ||||||||||||| |||  || ||| |||||||||    
T  15750087 ctttgtggtacaccttgt-ttaaggagacttcttgtcgttattattatatacca 15750035  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 32645024 - 32645075
Alignment:
Q  224 gctttactgggtggtggtcaaaccctttgttgtgtttgggtattggctaatt 275  Q
    ||||||||  ||||||||||||||||||||| |||||||| ||| |||||||    
T  32645024 gctttacttcgtggtggtcaaaccctttgttatgtttgggcattagctaatt 32645075  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 9601941 - 9601856
Alignment:
Q  20 tttcctctcatgagacataattcatttgagaggaatatatacaagagaaagtatctaaataagaagaaatgaaagaaaggataaaa 105  Q
    |||||| || |||||||| | ||| ||||||| | |  |||||||||||| ||||  ||||| ||||||||||||||| |||||||    
T  9601941 tttcctatcctgagacatgaatcacttgagagaagttgatacaagagaaaatatcagaataaaaagaaatgaaagaaaagataaaa 9601856  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 31431052 - 31431083
Alignment:
Q  107 ataaaatatggtgcaatattatccacataaat 138  Q
    ||||||||||||||||||||||||||||||||    
T  31431052 ataaaatatggtgcaatattatccacataaat 31431083  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 30486567 - 30486498
Alignment:
Q  115 tggtgcaatattatccacataaattgtcggtgttttgtccaccatataaaacttaaaaagacatttattta 185  Q
    |||| ||||||||||| |||||||||||||||  |||| ||||| ||||||| | ||||||||| ||||||    
T  30486567 tggttcaatattatccgcataaattgtcggtgcattgtgcaccacataaaacat-aaaagacatatattta 30486498  T

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