View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_24 (Length: 469)
Name: NF15735_low_24
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 28772442 - 28772042
Alignment:
| Q |
13 |
atgaaagaaaacaacttttacaaacagcagaatacaatacctcaagaaatgaaagaaaaacaaattttataatgctgaaatgatccaaacatggtaagaa |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28772442 |
atgaaagaaaacaacttttacaa-cagcagaatacaatgcatcaagaaatgaaagaaaa-caaattttataatgctgaaatgatccaaacatggtaagaa |
28772345 |
T |
|
| Q |
113 |
cacaaaagtgcttgtgagtaacgttttttctgacgccatgtggcaggcattttggagtgaagaagtgcacgcaaacattgtagaattgtgaagggtgcgt |
212 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28772344 |
cacaaaagtgctcgtgagtaacgtttgttctgacgccatgtggcaggcattttggagtgaagaagtgcacgcaaacattgtagaattgtgaagggtgcgt |
28772245 |
T |
|
| Q |
213 |
ttccttgtgaagggttttgttgttttctgactggaatgagtttgaaactgaggttgtctttctagattttatgatgtggcaaccatgccaaaaagaacaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28772244 |
ttccttgtgaagggttttgttgttttctgaat-gaatgagtttgaaactgaggttgtctttctagattttatgatgtggcaaccatgccaaaaagaacaa |
28772146 |
T |
|
| Q |
313 |
cactgaatttaaggaagcaactgaaaactggttttcgaggtttcagtttcatttacattgcttagctaatagtctctacgatcacacaattataagcaaa |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
28772145 |
cactgaatttaaggaagcaactgaaaactggttttcgaggtttcagtttcatttacattgcttagctaataatctctacgat--cacaattataagcaaa |
28772048 |
T |
|
| Q |
413 |
atacaa |
418 |
Q |
| |
|
|||||| |
|
|
| T |
28772047 |
atacaa |
28772042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 28786430 - 28786091
Alignment:
| Q |
13 |
atgaaagaaaacaacttttacaaacagcagaatacaatacctcaagaaatgaaagaaaaacaaattttataatgctgaaatgatccaaacatggtaagaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
28786430 |
atgaaagaaaacaacttttacaaacagcagaatacaatgcatcaagaaatgaaagaaaa-caaattttataatgct------atccaaacatggtaagaa |
28786338 |
T |
|
| Q |
113 |
cacaaaagtgcttgtgagtaacgttttttctgacgccatgtggcaggcattttggagtgaagaagtgcacgcaaacattgtagaattgtgaagggtgcgt |
212 |
Q |
| |
|
||||||||||| ||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28786337 |
cacaaaagtgcaggtgagtaacatttgtt-tgatgccatgtggcaggcattttggagtgaagaagtgcacgcaaacattgtaaaattgtgaa-------- |
28786247 |
T |
|
| Q |
213 |
ttccttgtgaagggttttgttgttttctgactggaatgagtttgaaactgaggttgtctttctagattttatgatgtggcaaccatgccaaaaagaacaa |
312 |
Q |
| |
|
||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
28786246 |
-----------gggttttgttgttttgtgaatg-aattagtttgaaactgaggttgtctttctagattttgtgatgtggcaaccatgccataacgaacat |
28786159 |
T |
|
| Q |
313 |
cactgaatttaaggaagcaactgaaaactggttttcgaggtttcagtttcatttacattgcttagctaata |
383 |
Q |
| |
|
||| |||||| || |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
28786158 |
cacagaatttgagaaagcaa---aaaactggttttcgaggtttcggtttcatttgcattgcttagctaata |
28786091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 28772489 - 28772432
Alignment:
| Q |
13 |
atgaaagaaaacaacttttacaaacagcagaatacaatacctcaagaaatgaaagaaaa |
71 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |
|
|
| T |
28772489 |
atgaaagaaaacaacttttacaa-cagcagaatacaatgcatcaagaaatgaaagaaaa |
28772432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 28772517 - 28772479
Alignment:
| Q |
33 |
caaacagcagaatacaatacctcaagaaatgaaagaaaa |
71 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28772517 |
caaacagcagaatacaaagcctcaagaaatgaaagaaaa |
28772479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University