View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_26 (Length: 457)

Name: NF15735_low_26
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_26
NF15735_low_26
[»] chr4 (2 HSPs)
chr4 (1-326)||(1961987-1962316)
chr4 (212-326)||(1962535-1962649)
[»] chr7 (1 HSPs)
chr7 (327-443)||(41683407-41683516)
[»] chr6 (4 HSPs)
chr6 (250-320)||(11423817-11423887)
chr6 (239-326)||(35241086-35241173)
chr6 (273-326)||(35240358-35240411)
chr6 (6-94)||(35240887-35240976)
[»] chr8 (2 HSPs)
chr8 (6-94)||(14111463-14111552)
chr8 (253-326)||(14112521-14112594)
[»] chr2 (1 HSPs)
chr2 (1-65)||(1573970-1574034)
[»] chr5 (1 HSPs)
chr5 (216-298)||(18228327-18228406)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 1962316 - 1961987
Alignment:
Q  1 taaacaacatcagaaaatatacacagagaatgtgagaaggaaggaag----agggaaaataaagaaggatggaggaagagcaccaccgttggtgcaccaa 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962316 taaacaacatcagaaaatatacacagagaatgtgagaaggaaggaaggaagagggaaaataaagaaggatggaggaagagcaccaccgttggtgcaccaa 1962217  T
Q  97 caaacagatccaccgctgctatgggtttgtgaagaagggggtgtgaggaatgtgtgaaaggaaagagacaacaattcatcagttttactttttggaaaaa 196  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1962216 caaacagatccaccgctactctgggtttgtgaagaagggggtgtgaggaatgtgtgaaaggaaaaagacaacaattcatcagttttactttttggaaaaa 1962117  T
Q  197 atccagcagatttatttgattttaattggttttattataagtcgttgatctgccattaaaaggaatgaagggctgtgattgctccacaggagaaaactgg 296  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  1962116 atccagcagatttatttggttttaattggttttattataagccgttgatctgccattaaaaggaatggagggctatgattgctccacaggagaaaactgg 1962017  T
Q  297 agaaattttgactggagacaatccgttccc 326  Q
    |||||||||||||||||||||||| |||||    
T  1962016 agaaattttgactggagacaatccattccc 1961987  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 1962535 - 1962649
Alignment:
Q  212 ttgattttaattggttttattataagtcgttgatctgccattaaaaggaatgaagggctgtgattgctccacaggagaaaactggagaaattttgactgg 311  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1962535 ttgattttaattgattttattataagccgttgatcttccattaaaaggaatgaagggctgtgattgctccacaggagaaaacaggagaaattttgactgg 1962634  T
Q  312 agacaatccgttccc 326  Q
    ||||||||| |||||    
T  1962635 agacaatccattccc 1962649  T

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Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 327 - 443
Target Start/End: Complemental strand, 41683516 - 41683407
Alignment:
Q  327 tgtttcatcatcaattgattggtttaagtgatagttagatgtaaatgctcataatttcatcccaaaatagacacacttgtaccgataatataatagcccc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  41683516 tgtttcatcatcaattgattggtttaagtgatagttagatgtaaatgctcataatttcatcccaaaatagacacacttgtac-------ataatagcccc 41683424  T
Q  427 aaaatatatgtttcatt 443  Q
    |||||||||||||||||    
T  41683423 aaaatatatgtttcatt 41683407  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 11423817 - 11423887
Alignment:
Q  250 cattaaaaggaatgaagggctgtgattgctccacaggagaaaactggagaaattttgactggagacaatcc 320  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||  ||||||||||    
T  11423817 cattaaaaggaatgaagggttgtgattgtttcacaggagaaaactgcagaaattttgacaagagacaatcc 11423887  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 35241086 - 35241173
Alignment:
Q  239 cgttgatctgccattaaaaggaatgaagggctgtgattgctccacaggagaaaactggagaaattttgactggagacaatccgttccc 326  Q
    |||||||||  |||| |||| |||| ||||||  ||||||| ||||||||||||| ||||||| || ||||||||||||||| |||||    
T  35241086 cgttgatctatcattcaaagaaatggagggctcagattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc 35241173  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 35240411 - 35240358
Alignment:
Q  273 gattgctccacaggagaaaactggagaaattttgactggagacaatccgttccc 326  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||    
T  35240411 gattgcttcacaggagaaaacaggagaaaatttgactggagacaatcctttccc 35240358  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 35240887 - 35240976
Alignment:
Q  6 aacatcagaaaatatacacagagaatgtgagaaggaaggaagaggga-aaataaagaaggatggaggaagagcaccaccgttggtgcacc 94  Q
    ||||||||||||||||| ||||||||| |||||||||  |||||||| |||||  |||||||| ||||||  |  |||||||||||||||    
T  35240887 aacatcagaaaatatacccagagaatgagagaaggaaataagagggagaaatattgaaggatgaaggaaggacgtcaccgttggtgcacc 35240976  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 14111463 - 14111552
Alignment:
Q  6 aacatcagaaaatatacacagagaatgtgagaaggaaggaagaggga-aaataaagaaggatggaggaagagcaccaccgttggtgcacc 94  Q
    ||||||||||||||||| ||||||||| |||||||||  |||||||| |||||| |||||||| ||||||  |  |||||||||||||||    
T  14111463 aacatcagaaaatatacccagagaatgagagaaggaaataagagggagaaataatgaaggatgaaggaaggacgtcaccgttggtgcacc 14111552  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 14112521 - 14112594
Alignment:
Q  253 taaaaggaatgaagggctgtgattgctccacaggagaaaactggagaaattttgactggagacaatccgttccc 326  Q
    |||||| |||| ||||||  ||||||| |||||||||||||  |||||| || ||||||||||||||| |||||    
T  14112521 taaaagaaatggagggctcagattgcttcacaggagaaaacatgagaaaattggactggagacaatccattccc 14112594  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1574034 - 1573970
Alignment:
Q  1 taaacaacatcagaaaatatacacagagaatgtgagaaggaaggaagagggaaaataaagaagga 65  Q
    ||||||| |||||||||| |||  |||||||| |||||||||||||  ||||||||| |||||||    
T  1574034 taaacaatatcagaaaatttacttagagaatgggagaaggaaggaaaggggaaaatagagaagga 1573970  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 18228327 - 18228406
Alignment:
Q  216 ttttaattggttttattataagtcgttgatctgccattaaaaggaatgaagggctgtgattgctccacaggagaaaactggag 298  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||||  |||||||  |||||||   |||||||||||||||    
T  18228327 ttttaattggttttattcttagtcgttgatctg-tattaaaaggaatagagggctgatattgctc--aaggagaaaactggag 18228406  T

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