View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_27 (Length: 456)
Name: NF15735_low_27
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 188 - 440
Target Start/End: Original strand, 3707865 - 3708122
Alignment:
| Q |
188 |
caaagcacattatgagtcatctcacttaatatattacttaacattcacttgatgcacaacattacaatattgtgtacttagcttcataatttatattnnn |
287 |
Q |
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| T |
3707865 |
caaagcacattatgagtcatctcacttaatatattacttaacattcacttgatgcacaacattacaatattgtgtacttagcttcataatttatatttaa |
3707964 |
T |
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| Q |
288 |
nnnnnn--catctaattgactgtgcatgtttagaat---gatagagtagacaaaatcacaaaggcagtgtggttttgttgaagttccataatgattcatt |
382 |
Q |
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| T |
3707965 |
aaaaaaaacatctaattgactgtgcatgtttagaatcatgatagtgtagacaaaatcacaaaggcagggtggttttgttgaagttccataatgatttatc |
3708064 |
T |
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| Q |
383 |
gtgattttgtcaaacttaccgtgaatcaaaacataacttgagtagtaatggtgataat |
440 |
Q |
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| T |
3708065 |
gtaattttgtcaaacttaccgtgaattaaaacataacttgagtagtaatggtcataat |
3708122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 3707733 - 3707848
Alignment:
| Q |
14 |
aggctaccatcacgaaactcaagtgaatacttacatgttgcttttatataaagaactaagaagattagtcaaaggttcaactccaacttagcggaaaaca |
113 |
Q |
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| T |
3707733 |
aggctaccatcacgaaactcaagtgaatacttacatgttgcttttatataa-gaactaagaagattagtcaaagtttcaactccaacttagcggaaaaca |
3707831 |
T |
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| Q |
114 |
catgcataaaggtgaaa |
130 |
Q |
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| T |
3707832 |
catgcataaaggtgaaa |
3707848 |
T |
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