View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_30 (Length: 431)

Name: NF15735_low_30
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_30
NF15735_low_30
[»] chr1 (13 HSPs)
chr1 (6-418)||(9964293-9964703)
chr1 (155-263)||(51814493-51814602)
chr1 (189-232)||(12259294-12259337)
chr1 (190-263)||(1600260-1600333)
chr1 (202-263)||(37400321-37400382)
chr1 (21-114)||(46729221-46729314)
chr1 (154-232)||(6650593-6650672)
chr1 (63-130)||(26756192-26756259)
chr1 (193-263)||(6122832-6122902)
chr1 (47-105)||(14758617-14758675)
chr1 (24-105)||(44920276-44920357)
chr1 (23-130)||(2864175-2864282)
chr1 (155-234)||(40257398-40257478)
[»] chr2 (14 HSPs)
chr2 (25-130)||(34233891-34233995)
chr2 (156-263)||(23052491-23052599)
chr2 (193-263)||(21195644-21195714)
chr2 (189-227)||(23465925-23465963)
chr2 (23-136)||(24792016-24792130)
chr2 (49-130)||(35022640-35022721)
chr2 (154-251)||(33839240-33839339)
chr2 (85-136)||(8964419-8964470)
chr2 (61-130)||(2713431-2713500)
chr2 (156-232)||(19016031-19016108)
chr2 (194-263)||(42327363-42327432)
chr2 (177-232)||(6859311-6859367)
chr2 (24-136)||(13538423-13538535)
chr2 (48-136)||(41073105-41073193)
[»] chr5 (14 HSPs)
chr5 (25-133)||(41583573-41583681)
chr5 (54-131)||(7581175-7581252)
chr5 (197-262)||(18437127-18437192)
chr5 (46-130)||(12198228-12198312)
chr5 (70-130)||(31889649-31889709)
chr5 (189-232)||(84858-84901)
chr5 (174-232)||(25979188-25979247)
chr5 (194-248)||(21549120-21549174)
chr5 (23-73)||(40530126-40530176)
chr5 (156-232)||(25627057-25627134)
chr5 (194-263)||(43442235-43442304)
chr5 (23-99)||(5758626-5758702)
chr5 (156-263)||(29075781-29075889)
chr5 (196-232)||(38329042-38329078)
[»] chr7 (14 HSPs)
chr7 (156-262)||(23301571-23301678)
chr7 (54-122)||(2347458-2347526)
chr7 (154-232)||(2446306-2446385)
chr7 (154-232)||(23552116-23552195)
chr7 (25-128)||(31902718-31902820)
chr7 (155-264)||(18056742-18056852)
chr7 (211-265)||(42477034-42477088)
chr7 (194-263)||(7721408-7721477)
chr7 (194-263)||(9183159-9183228)
chr7 (156-232)||(43590907-43590984)
chr7 (156-263)||(15137553-15137661)
chr7 (23-79)||(17255389-17255445)
chr7 (158-221)||(21854550-21854614)
chr7 (49-129)||(24450496-24450576)
[»] chr3 (12 HSPs)
chr3 (65-136)||(28874519-28874590)
chr3 (193-232)||(8796092-8796131)
chr3 (194-232)||(36010781-36010819)
chr3 (189-232)||(14339644-14339687)
chr3 (72-130)||(25548213-25548271)
chr3 (204-262)||(29186498-29186556)
chr3 (21-87)||(47507162-47507228)
chr3 (194-263)||(10445107-10445176)
chr3 (23-104)||(45529085-45529166)
chr3 (156-231)||(27923043-27923119)
chr3 (202-262)||(30188914-30188974)
chr3 (196-248)||(37788448-37788500)
[»] scaffold0172 (1 HSPs)
scaffold0172 (155-232)||(15776-15854)
[»] chr8 (15 HSPs)
chr8 (193-263)||(27750768-27750838)
chr8 (49-122)||(44960504-44960577)
chr8 (54-136)||(39691111-39691193)
chr8 (49-130)||(24733205-24733286)
chr8 (189-262)||(30483853-30483926)
chr8 (193-263)||(11819814-11819884)
chr8 (193-263)||(13129706-13129776)
chr8 (91-133)||(27734374-27734416)
chr8 (196-262)||(27979198-27979264)
chr8 (196-262)||(28036467-28036533)
chr8 (193-263)||(33727841-33727911)
chr8 (205-263)||(43594286-43594344)
chr8 (72-129)||(27633644-27633701)
chr8 (210-263)||(43866641-43866694)
chr8 (196-232)||(27871709-27871745)
[»] chr6 (13 HSPs)
chr6 (190-252)||(8268673-8268735)
chr6 (200-251)||(1906538-1906589)
chr6 (155-263)||(3172736-3172845)
chr6 (47-122)||(2963255-2963330)
chr6 (189-263)||(11423600-11423674)
chr6 (194-248)||(12188286-12188340)
chr6 (194-232)||(13227157-13227195)
chr6 (193-263)||(14199915-14199985)
chr6 (49-106)||(1479084-1479141)
chr6 (194-263)||(20213080-20213149)
chr6 (156-232)||(21418470-21418547)
chr6 (194-263)||(22107103-22107172)
chr6 (196-232)||(28841455-28841491)
[»] chr4 (23 HSPs)
chr4 (49-130)||(41370160-41370241)
chr4 (23-122)||(32692918-32693017)
chr4 (194-248)||(7292781-7292835)
chr4 (193-263)||(8030172-8030242)
chr4 (159-232)||(41346962-41347036)
chr4 (44-101)||(134904-134961)
chr4 (189-262)||(31826643-31826716)
chr4 (202-263)||(35644130-35644191)
chr4 (48-136)||(5798977-5799065)
chr4 (194-262)||(8306524-8306592)
chr4 (190-262)||(51969052-51969124)
chr4 (54-141)||(14948984-14949071)
chr4 (159-265)||(25869543-25869650)
chr4 (153-231)||(51250522-51250601)
chr4 (23-105)||(7388833-7388915)
chr4 (194-248)||(23377995-23378049)
chr4 (187-232)||(7539622-7539667)
chr4 (47-136)||(13800686-13800775)
chr4 (49-122)||(14603735-14603808)
chr4 (187-232)||(49576893-49576938)
chr4 (196-232)||(32992653-32992689)
chr4 (76-136)||(35777718-35777778)
chr4 (194-262)||(53496916-53496984)
[»] scaffold0517 (1 HSPs)
scaffold0517 (202-263)||(7694-7755)
[»] scaffold0047 (1 HSPs)
scaffold0047 (156-232)||(14971-15047)
[»] scaffold0180 (1 HSPs)
scaffold0180 (194-232)||(19961-19999)
[»] scaffold0070 (1 HSPs)
scaffold0070 (194-232)||(42519-42557)
[»] scaffold0291 (1 HSPs)
scaffold0291 (187-232)||(2469-2514)
[»] scaffold0005 (1 HSPs)
scaffold0005 (49-122)||(213570-213643)
[»] scaffold0003 (1 HSPs)
scaffold0003 (23-79)||(353940-353996)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 418
Target Start/End: Original strand, 9964293 - 9964703
Alignment:
Q  6 caataatatatcatcaaggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcat 105  Q
    |||||||||||||||| |||||||||||| ||||| | ||||||| | ||| |      | ||||||| |||||||||||||||||||||||||||||||    
T  9964293 caataatatatcatcagggaaatgctaacaagtgctcctgagacattctttcaa-----tcaatagtatattttcatgtaaatttgtgtattcaatgcat 9964387  T
Q  106 tagaatttgtaatattttactttttgaaagattactattcaaagacatgaaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgc 204  Q
    ||||||||||||||||||||||||||||||| || |||  |||||||||||| |||||| ||||||||||||| ||||| ||||| || ||||||| |||    
T  9964388 tagaatttgtaatattttactttttgaaagaataatatctaaagacatgaaatccacttgggttagcctgatgttattgacttgggatctgggagtgtgc 9964487  T
Q  205 tcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttagatccttnnnnnnnntatc--taaagacatgacatttatttt 302  Q
    || ||||||| |||||| ||| |||| | |  ||||||||||| ||||| ||||||||| | |||         |    |||||||||||||||||||||    
T  9964488 tcttcctcaatgtctcaggtttgattatctccagtgctaattttgatgggctaatttagtttcttaaaaaaaaaaaaattaaagacatgacatttatttt 9964587  T
Q  303 ctttggttgtcacaaacaccttggtacaagacaatgcatgttctttctttatctcttgttcctttctcttccttcacattgtgacattaggtttgagaat 402  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9964588 ctttggttgtcacaaacaccttagtacaagacaatgcatgttctttctttatctcttgttcctttctcttccttcacattgtgacagtaggtttgagaat 9964687  T
Q  403 ttgtaatgtacaatgt 418  Q
    ||||||||||||||||    
T  9964688 ttgtaatgtacaatgt 9964703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 51814493 - 51814602
Alignment:
Q  155 aaacccacttaggttagcctgatgatattgtcttg-gatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgg 253  Q
    |||||||||| |||| |||||||| ||||| |||| ||| || |||| ||||||||||||| |||||| |||||||||| |   |||| ||||||| |||    
T  51814493 aaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgg 51814592  T
Q  254 actaatttag 263  Q
     |||||||||    
T  51814593 gctaatttag 51814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 12259294 - 12259337
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  12259294 ggatttgggagtgtgctcctcctcgaagtctcaagttcgattct 12259337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 1600333 - 1600260
Alignment:
Q  190 gatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||||||| |||||||||| ||||| ||| |||||||||| | | |||  |||||||||||||||| ||||    
T  1600333 gatttgggagtgtgctcctccttaaagtttcaggttcgattctctctggtgtcaatttggatggactaacttag 1600260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 37400321 - 37400382
Alignment:
Q  202 tgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||||| || |||||||||||||||||||   |||| ||||||||||||||| |||||    
T  37400321 tgctcctccttaaggtctcaagttcgattctatccggtgccaatttggatggactagtttag 37400382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 46729314 - 46729221
Alignment:
Q  21 aaggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttg 114  Q
    ||||||||  ||||||||||||   || |||| ||||||||| || ||||||||||||| ||| ||| ||||| |||||||||||  |||||||    
T  46729314 aaggaaatattaacgagtgccctaaaggcactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttg 46729221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 6650593 - 6650672
Alignment:
Q  154 gaaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||||| ||||||| ||||  || ||||| ||||| ||  |||||||||||||||||||| |||||| ||||||||||    
T  6650593 gaaacccaattaggttggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcgattct 6650672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 26756192 - 26756259
Alignment:
Q  63 ctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    |||||||||||| |||| | | ||||||| ||| | ||||||||||| |||||||||||| |||||||    
T  26756192 ctttaatagtaagtttttacgaaaatttgagtaataaatgcattagagtttgtaatatttgacttttt 26756259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 6122832 - 6122902
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||| ||||||||||||| |||||| |||||||||  | |||||  ||||||| ||| |||||||||    
T  6122832 ttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttag 6122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 14758675 - 14758617
Alignment:
Q  47 gacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcat 105  Q
    |||||| ||||||||| || ||||||||||||| ||| ||| ||||| |||||||||||    
T  14758675 gacactctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcat 14758617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 44920357 - 44920276
Alignment:
Q  24 gaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcat 105  Q
    |||||| ||||||||||||    | |||||||||||||| |  ||||||||||||| ||| ||| ||||| |||||||||||    
T  44920357 gaaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcat 44920276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 2864282 - 2864175
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaa-attttcatgtaaatttgtgtattcaatgcattagaatttgtaatatt 121  Q
    ||||||| ||||||||||||  ||| |||| |||||| || || ||||||||  |||| ||| ||| ||||||||| |||||||| ||| |||||||| |    
T  2864282 ggaaatgttaacgagtgccccggag-cactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagt 2864184  T
Q  122 ttacttttt 130  Q
    | |||||||    
T  2864183 tgacttttt 2864175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 40257398 - 40257478
Alignment:
Q  155 aaacccacttaggttagcctgatgatattgtcttg-gatttgggagtatgctcctcctcaaagtctcaagttcgattctat 234  Q
    |||||||||| |||| ||||| || ||||| |||| ||  ||||||| ||||||||||| | ||||||||||| |||||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctat 40257478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 34233891 - 34233995
Alignment:
Q  25 aaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatatttta 124  Q
    ||||| ||||||||| || | ||||||| |||||| ||||||||||||||||||| ||  ||||||||||| ||||||||||  |||||||||||||| |    
T  34233891 aaatgttaacgagtgtcc-taagacactctttaagcacctttaatagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttga 34233989  T
Q  125 cttttt 130  Q
    ||||||    
T  34233990 cttttt 34233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 23052599 - 23052491
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtctt-ggatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgga 254  Q
    |||||||||||||| ||||| || ||||| ||| ||| |||||||| |||| |||||||| |||||| ||||||||||   |||||| | ||||| |||     
T  23052599 aacccacttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctccctagtgccagtttgggtggg 23052500  T
Q  255 ctaatttag 263  Q
    |||||||||    
T  23052499 ctaatttag 23052491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 21195714 - 21195644
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||| ||||||||||||| |||||| |||||||||  | |||||  ||||||||||| |||||||||    
T  21195714 ttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttag 21195644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 23465963 - 23465925
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcg 227  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  23465963 ggatttgggagtatgctcctcctcaaagtctcaggttcg 23465925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 24792130 - 24792016
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatt-tgtgtattcaatgcattagaatttgtaatatt 121  Q
    ||||||| |||||||||||| |  | |||| |||||| ||| |||||||||| |||| ||  ||||| | |||| |||||||||| |||||||||| |||    
T  24792130 ggaaatgttaacgagtgcccctagggcactctttaagaaccattaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatt 24792031  T
Q  122 ttactttttgaaaga 136  Q
    | ||||||| |||||    
T  24792030 tgacttttttaaaga 24792016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 35022721 - 35022640
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    |||| |||||||||| ||||| |||| |||| ||  |||| |||||| ||||||||||| ||||| |||||||| |||||||    
T  35022721 cactctttaaggaccattaattgtaagtttttattaaaatatgtgtaatcaatgcattaaaatttataatatttgacttttt 35022640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 33839339 - 33839240
Alignment:
Q  154 gaaacccacttaggttagcctgatgatattgtctt--ggatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggat 251  Q
    |||||||| ||  |||||| ||||||||||| |||  |||  ||||||| ||||||||||||| |||||| |||| ||||| | | ||||||||||||||    
T  33839339 gaaacccatttgagttagcatgatgatattgactttgggacatgggagtgtgctcctcctcaaggtctcaggttcaattctttctggtgctaatttggat 33839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 8964470 - 8964419
Alignment:
Q  85 aaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    ||||||||||| |||||||||| ||| ||| ||||||||||||||| |||||    
T  8964470 aaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaaga 8964419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 2713431 - 2713500
Alignment:
Q  61 acctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    |||||||||||||| |||| ||| |||| ||| || ||| |||||| |||||||||| |||| |||||||    
T  2713431 acctttaatagtaagttttgatgaaaatctgtataatcattgcattggaatttgtaacatttgacttttt 2713500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 19016031 - 19016108
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttg-gatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||| |||| | |||||| ||||| |||| || |||||||| ||||||||||| | |||||||||| ||||||    
T  19016031 aacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgattct 19016108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 42327432 - 42327363
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| ||||||||||||| |||||| |||||||||| |   |||| ||||||| ||| |||||||||    
T  42327432 tgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaatttag 42327363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 6859367 - 6859311
Alignment:
Q  177 tgatattgtcttg-gatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||||| |||| ||| ||||||| |||||||| ||||||||||| ||||||||||    
T  6859367 tgatattgacttgtgatatgggagtgtgctcctcttcaaagtctcaggttcgattct 6859311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 13538535 - 13538423
Alignment:
Q  24 gaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatatttt 123  Q
    |||||| |||| |||||||  | |||||| |||||||  ||| |||||||| |||| ||| ||| || ||||||||||||||| ||| ||| | |||||     
T  13538535 gaaatgttaactagtgccctggggacactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaattatttg 13538436  T
Q  124 actttttgaaaga 136  Q
    | ||||| |||||    
T  13538435 aattttttaaaga 13538423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 41073105 - 41073193
Alignment:
Q  48 acactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    ||||| ||||| ||||||||||| ||| |||| ||| |||| | | |||||||||||||  ||||| |||||||| | ||| |||||||    
T  41073105 acactctttaaagacctttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctgaaaga 41073193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 41583681 - 41583573
Alignment:
Q  25 aaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatatttta 124  Q
    ||||||||||||||  ||| | | || | |||||| | ||| ||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||| |    
T  41583681 aaatgctaacgagtatccgcggggcattctttaagaatcttcaatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaa 41583582  T
Q  125 ctttttgaa 133  Q
    |||||||||    
T  41583581 ctttttgaa 41583573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 7581175 - 7581252
Alignment:
Q  54 tttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttg 131  Q
    |||||| | |||||||||||| |||||||  ||||| ||||||| ||| |||||||||||||||||||| | ||||||    
T  7581175 tttaagtatctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttgattttttg 7581252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 18437127 - 18437192
Alignment:
Q  197 gagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    |||| |||||||||||||||| ||  |||||||||| | |||||| ||||| ||||||||||||||    
T  18437127 gagtgtgctcctcctcaaagtttcgggttcgattctctctagtgccaatttagatggactaattta 18437192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 12198312 - 12198228
Alignment:
Q  46 agacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    ||||||| |||||||||  ||||||||||||||| ||| |||| |||| | | || |||||  |||||||||||||| |||||||    
T  12198312 agacactctttaaggacaattaatagtaaatttttatgaaaatatgtgcaattaaagcattgaaatttgtaatatttgacttttt 12198228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 31889709 - 31889649
Alignment:
Q  70 agtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    ||||| |||| ||| |||| |||||| |||||||||||||| ||| |||||||||||||||    
T  31889709 agtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttacttttt 31889649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 84858 - 84901
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||    
T  84858 ggatctgggagtgtgctcctcctcaaggtctcaagttcgattct 84901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 25979188 - 25979247
Alignment:
Q  174 tgatgatattgtcttgga-tttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||||| |||||| ||||||||| | ||||||||||| |||||| ||||||||||    
T  25979188 tgatgatattggcttggaatttgggagtgttctcctcctcaaggtctcaggttcgattct 25979247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 21549174 - 21549120
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttg 248  Q
    ||||||| |||||||||| |||||||||||||||||| | | |||||| ||||||    
T  21549174 tgggagtgtgctcctccttaaagtctcaagttcgattttctctagtgccaatttg 21549120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 40530126 - 40530176
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagta 73  Q
    ||||||| |||||||||||| |||||||||||||||| || || |||||||    
T  40530126 ggaaatgttaacgagtgcccttgagacactttttaagcactttaaatagta 40530176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 25627057 - 25627134
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttggat-ttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||| |||| ||||  || ||||| ||||||  |||||||| ||||||||||||| |||||| ||||||||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattct 25627134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 43442235 - 43442304
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| ||||||||||||| |||||| |||||||||| | |  ||  ||||||||||| |||||||||    
T  43442235 tgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaatttag 43442304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 5758702 - 5758626
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattca 99  Q
    |||||| |||||||||||||  | | |||||||||||||| || ||| |||| |||| ||| || ||||||||||||    
T  5758702 ggaaatactaacgagtgcccccggggcactttttaaggactttaaatggtaagtttttatgaaagtttgtgtattca 5758626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 29075781 - 29075889
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgga 254  Q
    ||||||||| |||| ||||  || ||||| ||||| || ||||||| ||||||||||| |  ||||| |||||||||| | | |||| ||||| |||||     
T  29075781 aacccacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatggg 29075880  T
Q  255 ctaatttag 263  Q
    |||||||||    
T  29075881 ctaatttag 29075889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 38329042 - 38329078
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  38329042 ggagtatactcctcctcaaagtctcacgttcgattct 38329078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 23301678 - 23301571
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgga 254  Q
    ||||||||| |||| ||||| || ||||| ||||| | |||||||| ||||||||||  | |||||||||| |||||| | |||||||||||||  ||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctcaagtttgattctctttagtgctaatttgagtgga 23301579  T
Q  255 ctaattta 262  Q
    ||||||||    
T  23301578 ctaattta 23301571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 2347526 - 2347458
Alignment:
Q  54 tttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 122  Q
    |||||| ||||||||||||||||||| ||  |||||| |||| ||||||||||  ||||||||||||||    
T  2347526 tttaagcacctttaatagtaaatttttattaaaatttatgtaatcaatgcattgaaatttgtaatattt 2347458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 2446306 - 2446385
Alignment:
Q  154 gaaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||||| |||| | |||||| ||||| ||||| | |||||||| ||||||||||| |  ||||||||||||||||    
T  2446306 gaaacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagttcgattct 2446385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 23552116 - 23552195
Alignment:
Q  154 gaaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||||| |||| ||||  || ||||| ||||| |  ||||||| ||||||||||||| |||||||||||||||||    
T  23552116 gaaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattct 23552195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 31902718 - 31902820
Alignment:
Q  25 aaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatatttta 124  Q
    ||||| ||||||||||||  ||| |||| ||||||||| || ||||||||||||| ||| ||| ||||||| |||||| |||  || ||| ||||||| |    
T  31902718 aaatgttaacgagtgcccccgag-cactctttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttga 31902816  T
Q  125 cttt 128  Q
    ||||    
T  31902817 cttt 31902820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 18056852 - 18056742
Alignment:
Q  155 aaacccacttaggttagcctgatgatattgtcttggat-ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgg 253  Q
    |||||||||| |||||| ||| || ||||| ||||| | || ||||| |||||||||| || |||||| ||||||||||     |||||||||||| |||    
T  18056852 aaacccacttgggttagtctggtggtattgacttgggtcttcggagtgtgctcctcctgaaggtctcaggttcgattctccccggtgctaatttgggtgg 18056753  T
Q  254 actaatttaga 264  Q
     ||||||||||    
T  18056752 gctaatttaga 18056742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 42477088 - 42477034
Alignment:
Q  211 tcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttagat 265  Q
    |||| ||||||||||||||||| |||||||  | ||| |||||||||||||||||    
T  42477088 tcaatgtctcaagttcgattctctatagtgacagtttagatggactaatttagat 42477034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 7721408 - 7721477
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| | ||||||||||| |||||| |||||||||| | | |||  |||||||||||| ||||||||    
T  7721408 tgggagtgtactcctcctcaaggtctcatgttcgattctctctggtgtcaatttggatggaataatttag 7721477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 9183228 - 9183159
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| |||||||||||||||||||| |||||||| | | | |||  ||||||| ||| |||||||||    
T  9183228 tgggagtgtgctcctcctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaatttag 9183159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 43590907 - 43590984
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||| || |||| ||||| || ||||| ||||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  43590907 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattct 43590984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 15137553 - 15137661
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgga 254  Q
    ||||||||| |||| ||||| || || || ||||| |||| ||||| ||||||||||||| |||||| ||| |||||| | | |||  ||||||| |||     
T  15137553 aacccacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtggg 15137652  T
Q  255 ctaatttag 263  Q
    |||||||||    
T  15137653 ctaatttag 15137661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 17255445 - 17255389
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaatttt 79  Q
    ||||||| |||| ||||||| |||| ||||| ||||||||||| |||||||| ||||    
T  17255445 ggaaatgttaactagtgcccctgaggcacttgttaaggaccttaaatagtaattttt 17255389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 21854550 - 21854614
Alignment:
Q  158 cccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctca 221  Q
    ||||||| |||| |||||||| ||||| || || || ||||||| ||||||||||||||||||||    
T  21854550 cccacttgggttggcctgatggtattggctagggatctgggagtgtgctcctcctcaaagtctca 21854614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 24450496 - 24450576
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttt 129  Q
    |||| |||||||||| || || |||||| || ||| ||||  |||||||||||||||| ||| | | ||||||||||||||    
T  24450496 cactctttaaggaccatttatggtaaatatttatgaaaatgcgtgtattcaatgcattggaaatcgaaatattttactttt 24450576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 28874590 - 28874519
Alignment:
Q  65 ttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    ||||||||||||||| ||| |||  |||||| |||||||||| |||||||||| |||||||||||| |||||    
T  28874590 ttaatagtaaatttttatgaaaaactgtgtaatcaatgcattggaatttgtaacattttacttttttaaaga 28874519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 8796131 - 8796092
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  8796131 ttgggagtatgctcctcctcaaggtctcaagttcgattct 8796092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 36010781 - 36010819
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  36010781 tgggagtgtgctcctcctcaaagtctcaagttcgattct 36010819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 14339644 - 14339687
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||    
T  14339644 ggatttgggagtgtgctcctcctcaatgtctcaggttcgattct 14339687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 25548213 - 25548271
Alignment:
Q  72 taaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    |||||||| ||| |||| |||||| |||||||||||||| ||| ||||||| |||||||    
T  25548213 taaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaacttttt 25548271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 29186498 - 29186556
Alignment:
Q  204 ctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||||||||| ||| || |||||||||| | |||||  ||||||||||||||||||||    
T  29186498 ctcctcctcaaggtcacatgttcgattctctttagtgtcaatttggatggactaattta 29186556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 47507228 - 47507162
Alignment:
Q  21 aaggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaa 87  Q
    |||||||||||||||| ||| | |  |||||| ||||| |||||| ||||||||||||| |||||||    
T  47507228 aaggaaatgctaacgaatgctcatccgacactctttaaagaccttaaatagtaaatttttatgtaaa 47507162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 10445176 - 10445107
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| ||||||||||| | |||||| |||||||||| | | |||||||||||  ||| |||||||||    
T  10445176 tgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttag 10445107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 45529085 - 45529166
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgca 104  Q
    ||||||| ||||||||||||  | || ||| |||||| ||| |||||||||| |||| ||| |||||| |||| ||||||||    
T  45529085 ggaaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttttatgaaaatttatgtaatcaatgca 45529166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 27923119 - 27923043
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattc 231  Q
    |||||||||||||| ||||| || ||||| ||||| |  ||| ||| |||||||||||| ||||||| |||||||||    
T  27923119 aacccacttaggttggcctggtggtattggcttgggacatggaagtgtgctcctcctcatagtctcaggttcgattc 27923043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 30188914 - 30188974
Alignment:
Q  202 tgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    |||| ||||||||| |||||||||| |||||   || |||||||||||||||| |||||||    
T  30188914 tgcttctcctcaaattctcaagttcaattctccctaatgctaatttggatggattaattta 30188974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 37788500 - 37788448
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttg 248  Q
    ||||| ||||||||||||| |||||| |||||||||| | |||||| ||||||    
T  37788500 ggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatttg 37788448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 15854 - 15776
Alignment:
Q  155 aaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||||| ||| ||||| || ||||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||    
T  15854 aaacccacttaagttggcctggtggtattggcttgggattttggagtatgctcctcctcaaggtctcaagtttgattct 15776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 27750768 - 27750838
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||| ||||||||||||| |||||| |||||||||  | |||||  |||||||||||||||||||||    
T  27750768 ttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatggactaatttag 27750838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 44960577 - 44960504
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 122  Q
    |||| |||||| || |||||||||||||||| ||| |||||| |||| ||||||||||  ||||||||||||||    
T  44960577 cactctttaagcacttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaatttgtaatattt 44960504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 39691111 - 39691193
Alignment:
Q  54 tttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    |||||||| ||| |||||||| |||| ||| ||||||||||||||||||||||  || ||| | ||||| ||||||| |||||    
T  39691111 tttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaaga 39691193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 24733286 - 24733205
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    |||| |||||| |||||||||||||| |||| ||  ||||||||||| |||||||| |  ||||||||| |||| |||||||    
T  24733286 cactctttaagtacctttaatagtaagtttttataaaaatttgtgtaatcaatgcactgtaatttgtaacatttgacttttt 24733205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 30483926 - 30483853
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    |||| ||||||| |||||||||||| ||||||| |||| ||||| | | |||| |||||| |||||||||||||    
T  30483926 ggatatgggagtgtgctcctcctcagagtctcaggttcaattctctcttgtgccaatttgaatggactaattta 30483853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 11819814 - 11819884
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||| ||||||||||||| |||||| |||||||||  | |||||  ||||||| ||| |||||||||    
T  11819814 ttgggagtgtgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttag 11819884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 13129706 - 13129776
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||||  |||||||||||| || ||| |||||||||| | | |||| |||||||||||| ||||||||    
T  13129706 ttgggagtgcgctcctcctcaaggtttcaggttcgattctctctggtgccaatttggatggattaatttag 13129776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 27734374 - 27734416
Alignment:
Q  91 gtgtattcaatgcattagaatttgtaatattttactttttgaa 133  Q
    |||||||||||||||| ||||||||||||||  ||||||||||    
T  27734374 gtgtattcaatgcattggaatttgtaatattagactttttgaa 27734416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 27979198 - 27979264
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||| || ||||||||||||||| |||||||||| | | |||||  ||||||||||| ||||||||    
T  27979198 ggagtttgttcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaattta 27979264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 28036467 - 28036533
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||| || ||||||||||||||| |||||||||| | | |||||  ||||||||||| ||||||||    
T  28036467 ggagtttgttcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaattta 28036533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 33727911 - 33727841
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||| ||| ||||||||||||| |||||| |||||||||  | |||||  ||||||||||| |||||||||    
T  33727911 ttggaagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttag 33727841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 43594344 - 43594286
Alignment:
Q  205 tcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||||| |||||| |||||||||| | |||||  ||||||||||| |||||||||    
T  43594344 tcctcctcaaggtctcaggttcgattctctctagtgtcaatttggatgggctaatttag 43594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 27633644 - 27633701
Alignment:
Q  72 taaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttt 129  Q
    |||||||| |||  |||| || |||||||||||||| |||||||||||||| ||||||    
T  27633644 taaatttttatgagaattagtatattcaatgcattacaatttgtaatatttaactttt 27633701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 43866641 - 43866694
Alignment:
Q  210 ctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||| ||||||||||||||| | | | |||||||||||| |||||||||||||    
T  43866641 ctcaaggtctcaagttcgattatgtctggtgctaatttgggtggactaatttag 43866694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 27871709 - 27871745
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||| || ||||||||||||||||||||||||||||    
T  27871709 ggagtttgttcctcctcaaagtctcaagttcgattct 27871745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 8268673 - 8268735
Alignment:
Q  190 gatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatg 252  Q
    ||||||||||| ||||||||||||||||| || |||||||||||| |||||  ||||||||||    
T  8268673 gatttgggagtgtgctcctcctcaaagtcacatgttcgattctatctagtgtgaatttggatg 8268735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 1906538 - 1906589
Alignment:
Q  200 tatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggat 251  Q
    ||||||||||||||| ||||||||||||||||| |  |||||||||||||||    
T  1906538 tatgctcctcctcaaggtctcaagttcgattcttttcagtgctaatttggat 1906589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 3172845 - 3172736
Alignment:
Q  155 aaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatgg 253  Q
    ||||||||||  ||||||| |||||||||| ||||| |  |||||||||||||||| || | ||||||  ||||||| | | ||||| |||||||| |||    
T  3172845 aaacccacttgagttagcccgatgatattgacttgggacctgggagtatgctcctcatcgaggtctcagattcgattttctttagtgttaatttgggtgg 3172746  T
Q  254 actaatttag 263  Q
     |||||||||    
T  3172745 gctaatttag 3172736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 2963330 - 2963255
Alignment:
Q  47 gacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 122  Q
    ||||||||||||| |||||||| |||||||||| | | |||||||| || ||| ||||||  ||||||||| ||||    
T  2963330 gacactttttaagcacctttaacagtaaatttttacgaaaatttgtataatcagtgcattgaaatttgtaacattt 2963255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 11423600 - 11423674
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||||||||||||| |||||| | |||||| |||||||| | |  ||||  |||||| ||||||||||||||    
T  11423600 ggatttgggagtatgcttctcctcgaggtctcaggttcgattttctccagtgtcaatttgtatggactaatttag 11423674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 12188340 - 12188286
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttg 248  Q
    ||||||| ||||||||||||| || |||||||||||||| | |||||| ||||||    
T  12188340 tgggagtgtgctcctcctcaaggtttcaagttcgattctctctagtgccaatttg 12188286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 13227195 - 13227157
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  13227195 tgggagtgtgctcctcctcgaagtctcaagttcgattct 13227157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 14199985 - 14199915
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||| ||||||||||||| ||||||  ||||||||  | |||||  ||||||| |||||||||||||    
T  14199985 ttgggagtgtgctcctcctcaaggtctcagattcgattccttctagtgtcaatttgggtggactaatttag 14199915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 1479084 - 1479141
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcatt 106  Q
    |||| |||||| || || ||| ||||||||| ||||||| ||||||||||||||||||    
T  1479084 cactctttaagcactttaaatggtaaatttttatgtaaaattgtgtattcaatgcatt 1479141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 20213080 - 20213149
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| ||||||||||||| |||||| |||||||||  | |||||  ||||||| ||| |||||||||    
T  20213080 tgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttag 20213149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 21418470 - 21418547
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||| || |||| ||||| || ||||| ||||| | |||||||| ||||||||||| | |||||||||||||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctccatgtctcaagttcgattct 21418547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 22107103 - 22107172
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||| ||||||||||||| |||||| |||||||||  | |||||  ||||||| ||| |||||||||    
T  22107103 tgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttag 22107172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 28841455 - 28841491
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  28841455 ggagtgtgctcctcctcaaggtctcaagttcgattct 28841491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 41370160 - 41370241
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttacttttt 130  Q
    |||||||||||||| || |||||||| |||| ||| ||||||||||| ||||||||||  || ||| ||||||| |||||||    
T  41370160 cactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttt 41370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 32692918 - 32693017
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 122  Q
    ||||||| |||||||||||   | |||||| |||||||||| |||||||||| |||| ||| |||| |||||| |||||| |||  ||||||||| ||||    
T  32692918 ggaaatgttaacgagtgcctccgggacactctttaaggaccattaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt 32693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 7292835 - 7292781
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttg 248  Q
    ||||||| |||||||||||||||||||| |||||||||| | |||||| ||||||    
T  7292835 tgggagtgtgctcctcctcaaagtctcaggttcgattctctctagtgccaatttg 7292781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 8030242 - 8030172
Alignment:
Q  193 ttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||| ||||||||||||| ||||||||||||||||  | |||||  ||||||| ||| |||||||||    
T  8030242 ttgggagtgtgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttag 8030172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 41347036 - 41346962
Alignment:
Q  159 ccacttaggttagcctgatgatattgtcttg-gatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||| |||| |||||||| |||||  ||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  41347036 ccacttgggttggcctgatggtattggtttgagatctgggagtatgctcctcctcgaagtctcaggttcgattct 41346962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 134961 - 134904
Alignment:
Q  44 tgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaat 101  Q
    |||||||||||||||| |||||||| |||||||||||||| |||| | |||| |||||    
T  134961 tgagacactttttaagcacctttaacagtaaattttcatgaaaatctatgtaatcaat 134904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 31826643 - 31826716
Alignment:
Q  189 ggatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||  | |||||  ||||||| ||| ||||||||    
T  31826643 ggatttgcgagtgtgctcctcctcaaggtctcaagttcgattccctttagtgtcaatttgggtgggctaattta 31826716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 35644191 - 35644130
Alignment:
Q  202 tgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    ||||||||||||| |||||| ||||||||||  || |||||||||||| ||| |||||||||    
T  35644191 tgctcctcctcaacgtctcaggttcgattctccatggtgctaatttgggtggcctaatttag 35644130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 5798977 - 5799065
Alignment:
Q  48 acactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    ||||| || ||| |||||||||| |||||||| ||  |||||||| || |||| |||||  |||||||||||||| ||||||| |||||    
T  5798977 acactcttcaagaacctttaataataaatttttataaaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaaga 5799065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 8306524 - 8306592
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||||| ||||||||||| |||||| |||||||||||| | |||||  |||||||||||  |||||||    
T  8306524 tgggagtgtgctcctcctcgaagtcttaagttcgattctctctagtgtcaatttggatggtataattta 8306592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 51969052 - 51969124
Alignment:
Q  190 gatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||||||||| ||||||||||||| || ||| ||||  |||| | | |||| ||||||||||||||||||||    
T  51969052 gatttgggagtgtgctcctcctcaaggtttcaggttcatttctctctggtgccaatttggatggactaattta 51969124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 14948984 - 14949071
Alignment:
Q  54 tttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaagattact 141  Q
    |||||| || |||||||  || |||| ||| ||||||||||| ||||||||||  ||||||||| |||| ||||||| ||||| ||||    
T  14948984 tttaagcacttttaataacaagtttttatgaaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatact 14949071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 25869650 - 25869543
Alignment:
Q  159 ccacttaggttagcctgatgatattgtcttg-gatttgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggacta 257  Q
    |||||| ||||||  ||||| ||||| |||| ||| || |||| |||||||||||||||||| | ||||||||||    |||| |||||||||||  |||    
T  25869650 ccacttgggttagtttgatggtattgacttgagatctgagagtgtgctcctcctcaaagtcttatgttcgattcttctcagtgttaatttggatgagcta 25869551  T
Q  258 atttagat 265  Q
    ||||||||    
T  25869550 atttagat 25869543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 51250601 - 51250522
Alignment:
Q  153 tgaaacccacttaggttagcctgatgatattgtcttgg-atttgggagtatgctcctcctcaaagtctcaagttcgattc 231  Q
    |||||||||||| |||| ||||| || ||||| ||||| || ||||||| |||||| ||||||  |||||||||||||||    
T  51250601 tgaaacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagttcgattc 51250522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 7388915 - 7388833
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcat 105  Q
    ||||||||||| ||||||||  | ||||||||||||| || ||  |||||||||||| ||| ||| ||||| ||| |||||||    
T  7388915 ggaaatgctaatgagtgccctcgggacactttttaagaactttagatagtaaatttttatggaaacttgtgcatttaatgcat 7388833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 23377995 - 23378049
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttg 248  Q
    ||||||| ||||||||||||| |||||| |||||||||| | |||||| ||||||    
T  23377995 tgggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatttg 23378049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 7539622 - 7539667
Alignment:
Q  187 ttggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||| ||||||||||||||| ||||| |||||| ||||||||||    
T  7539622 ttggatctgggagtatgctccttctcaaggtctcaggttcgattct 7539667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 13800686 - 13800775
Alignment:
Q  47 gacactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    |||||| |||||| ||| |||||||||| |||  ||| |||  |||||| |||||| ||  ||||||||||||||| ||||||| |||||    
T  13800686 gacactctttaagaaccattaatagtaactttctatgaaaaactgtgtaatcaatgtataggaatttgtaatatttgacttttttaaaga 13800775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 14603735 - 14603808
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 122  Q
    |||| ||||||||||||||||||| |  ||| ||| || ||||||||||||| |||||  || |||||||||||    
T  14603735 cactctttaaggacctttaatagtgagattttatgaaagtttgtgtattcaacgcattgaaacttgtaatattt 14603808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 49576938 - 49576893
Alignment:
Q  187 ttggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||| |||||||| ||||||||||||| |||||| ||||||||||    
T  49576938 ttggacttgggagtgtgctcctcctcaaggtctcaggttcgattct 49576893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 32992653 - 32992689
Alignment:
Q  196 ggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  32992653 ggagtgtgctcctcctcaaggtctcaagttcgattct 32992689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 35777718 - 35777778
Alignment:
Q  76 ttttcatgtaaatttgtgtattcaatgcattagaatttgtaatattttactttttgaaaga 136  Q
    |||| ||| ||| ||||||||| |||||||||||| |||||||| || ||||||| |||||    
T  35777718 ttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaaga 35777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 53496916 - 53496984
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaattta 262  Q
    ||||||| ||||||||||||||||||||  || |||||| | | | || ||||||| ||||||||||||    
T  53496916 tgggagtgtgctcctcctcaaagtctcagatttgattctctctggagccaatttggttggactaattta 53496984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 7755 - 7694
Alignment:
Q  202 tgctcctcctcaaagtctcaagttcgattctatatagtgctaatttggatggactaatttag 263  Q
    |||||||||| || |||||||||||||||||||   |||| ||||||||||||||| |||||    
T  7755 tgctcctccttaaggtctcaagttcgattctatccggtgccaatttggatggactagtttag 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 15047 - 14971
Alignment:
Q  156 aacccacttaggttagcctgatgatattgtctt-ggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||| |||||| |||||| ||||| ||| |||  ||||||||||||||||||| |||||||| ||||||||||    
T  15047 aacccacttgggttagtctgatgctattggcttaggaactgggagtatgctcctcctc-aagtctcaggttcgattct 14971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 19999 - 19961
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  19999 tgggagtatgctcctcctcaaggtctcaggttcgattct 19961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 42557 - 42519
Alignment:
Q  194 tgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  42557 tgggagtatgctcctcctcagagtctcaggttcgattct 42519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 2514 - 2469
Alignment:
Q  187 ttggatttgggagtatgctcctcctcaaagtctcaagttcgattct 232  Q
    |||||| ||||||| ||||||||||||| |||||| ||||||||||    
T  2514 ttggatctgggagtgtgctcctcctcaaggtctcaggttcgattct 2469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 213643 - 213570
Alignment:
Q  49 cactttttaaggacctttaatagtaaattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 122  Q
    |||| ||||||||||||||||||| |  ||| ||| || ||||||||||||| |||||  || |||||||||||    
T  213643 cactctttaaggacctttaatagtgagattttatgaaagtttgtgtattcaacgcattgaaacttgtaatattt 213570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 353940 - 353996
Alignment:
Q  23 ggaaatgctaacgagtgcccgtgagacactttttaaggacctttaatagtaaatttt 79  Q
    ||||||| |||||||||||   ||||||||||||||| || ||||||| ||||||||    
T  353940 ggaaatgttaacgagtgccaccgagacactttttaagaacatttaataataaatttt 353996  T

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