View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_31 (Length: 417)
Name: NF15735_low_31
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 45037129 - 45037491
Alignment:
| Q |
18 |
aatacaaaatcggttattgtcaacaatgtccagaaaaagtgcattggccaaaggaaatgggtcaacctccttcactttacttcaatgctggcatgttcct |
117 |
Q |
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| T |
45037129 |
aatacaaaatcggttattgtcaacaatgtccagaaaaagttcattggccaaaggaaatgggtcaacctccttcactttacttcaatgctggcatgttcct |
45037228 |
T |
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| Q |
118 |
gtttgagccaagcattgatacttaccacgatcttttgaagacacttaaagttactcctcctactccttttgctgaacaagatttcttgaatatgtatttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037229 |
gtttgagccaagcattgatacttaccacgatcttttgaagacacttaaagttactcctcctactccttttgctgaacaagatttcttgaatatgtatttc |
45037328 |
T |
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| Q |
218 |
aaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttc |
317 |
Q |
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| T |
45037329 |
aaggatatttataagccaatcccatttgtttacaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttc |
45037428 |
T |
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| Q |
318 |
actattgtgcagcggtaagtaatggaatgcatattttgatttattgattgtgtgaataaattt |
380 |
Q |
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| T |
45037429 |
actattgtgcagcggtaagtaatgcaatgcatattttgatttattgattgtgtgaataaattt |
45037491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 45944147 - 45944023
Alignment:
| Q |
203 |
ttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcata |
302 |
Q |
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| T |
45944147 |
ttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgaga |
45944048 |
T |
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| Q |
303 |
aagtcaaggttgttcactattgtgc |
327 |
Q |
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| T |
45944047 |
aagttcaagttgttcactattgtgc |
45944023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 20395224 - 20395365
Alignment:
| Q |
196 |
agatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgag |
295 |
Q |
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|||||| ||||||||||||||||| |||| |||||||| ||||| |||||||||||||| || || ||||| |||||||||||||| |||||||| |
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| T |
20395224 |
agattttttgaatatgtatttcaatgataaatataagcctatccctaatgtttacaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaa |
20395323 |
T |
|
| Q |
296 |
cttcataaagtcaaggttgttcactattgtgcagcggtaagt |
337 |
Q |
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| T |
20395324 |
cttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 334
Target Start/End: Complemental strand, 37687052 - 37686915
Alignment:
| Q |
197 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
296 |
Q |
| |
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||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37687052 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37686953 |
T |
|
| Q |
297 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
334 |
Q |
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|| | |||||||| |||||||| || |||||||||||| |
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| T |
37686952 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 334
Target Start/End: Original strand, 37698466 - 37698603
Alignment:
| Q |
197 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
296 |
Q |
| |
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||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37698466 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37698565 |
T |
|
| Q |
297 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
334 |
Q |
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|| | |||||||| |||||||| || |||||||||||| |
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| T |
37698566 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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